TCONS_00023666 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023666
Unique NameTCONS_00023666
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023666 ID=TCONS_00023666|Name=TCONS_00023666|organism=Clytia hemisphaerica|type=transcript|length=751bp
TATCAAGTGGTAGAGAAGTAGAGATAATACGATTGAGAGGGTGGTATTAT
GATATGATAAAATCGCGTTCATATTTTTTCCTCTTATACTTTTTATAGGG
CATAATGTTTCTTTCTTTGTAAAATCTCCTTTTTGCTGCGAGTTTCAATC
TTTAAAAGTATAAACGAGTGTCTTGATGGAACCCTGTCATGATTATCTGG
CTAACCAGAgtgtaaactttttttaaagaatgatACAAGTTTCATTATGG
TAAAATAAATACAgtatcgaaagcgaaaccattTCGCAACCAgtgtattt
aaaaaacaataaaatgtgGTTCTTCTAGACGTTTCCATAGGTCTCAAGTT
CGAGCCTTAGATCCAATGAATAACTAAAACTAACTTTAAGCTCTTTGGaa
agggacaagctggagtttttacaagctcttatttgatttggttggtcgtt
aagatgtaataaaagaatcttattaccttttctaaagaacgcgtcatctc
tatcactttaaatgaccaattagtgatgtatcttgtaaaaactccagctc
atccctttGGAAGACCTTTCAAGTGAAAAAATAAGTATATCAAATATTAT
TTCAGTTCGAAAATCTCTGAATAATAAGAAATTTATCGAGTTTTTATAAT
ATACTGATTCTTATAAGAGCAAGTATTATTATATTGTGTGTAAAACGAAA
TCCGATCACGAATTGATTTTCTGATGAAATGTCTCTACTTTTTGGAACGC
G
Run BLAST on NCBI

transcript from alignment at sc0000457:80464..81214

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023666 ID=TCONS_00023666|Name=TCONS_00023666|organism=Clytia hemisphaerica|type=transcript|length=751bp|location=Sequence derived from alignment at sc0000457:80464..81214 (Clytia hemisphaerica)
CGCGTTCCAAAAAGTAGAGACATTTCATCAGAAAATCAATTCGTGATCGG
ATTTCGTTTTACACACAATATAATAATACTTGCTCTTATAAGAATCAGTA
TATTATAAAAACTCGATAAATTTCTTATTATTCAGAGATTTTCGAACTGA
AATAATATTTGATATACTTATTTTTTCACTTGAAAGGTCTTCCaaaggga
tgagctggagtttttacaagatacatcactaattggtcatttaaagtgat
agagatgacgcgttctttagaaaaggtaataagattcttttattacatct
taacgaccaaccaaatcaaataagagcttgtaaaaactccagcttgtccc
tttCCAAAGAGCTTAAAGTTAGTTTTAGTTATTCATTGGATCTAAGGCTC
GAACTTGAGACCTATGGAAACGTCTAGAAGAACcacattttattgttttt
taaatacacTGGTTGCGAaatggtttcgctttcgatacTGTATTTATTTT
ACCATAATGAAACTTGTatcattctttaaaaaaagtttacacTCTGGTTA
GCCAGATAATCATGACAGGGTTCCATCAAGACACTCGTTTATACTTTTAA
AGATTGAAACTCGCAGCAAAAAGGAGATTTTACAAAGAAAGAAACATTAT
GCCCTATAAAAAGTATAAGAGGAAAAAATATGAACGCGATTTTATCATAT
CATAATACCACCCTCTCAATCGTATTATCTCTACTTCTCTACCACTTGAT
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013291XLOC_013291Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023666-exon-sc0000457-1491911889:80464..81214TCONS_00023666-exon-sc0000457-1491911889:80464..81214Clytia hemisphaericaexon
TCONS_00023666-exon-sc0000457-1510915933:80464..81214TCONS_00023666-exon-sc0000457-1510915933:80464..81214Clytia hemisphaericaexon
TCONS_00023666-exon-sc0000457-1575043694:80464..81214TCONS_00023666-exon-sc0000457-1575043694:80464..81214Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000457supercontigsc0000457:80464..81214 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.28168	0.314232	0.138024	0.157613	0.18816	0.220484	0.507718	0.158708	0.0562747	0.209677	0	0.275211	0.176192	0.0969093	0.452804	0.272921	0.147625	0.155197	0.139615	0.451413	0.399637	0.28346	0.226284	0.360257	0.576502	0.573995	0.097951	0.205016	1.5181	0.911882
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023666 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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