TCONS_00023539 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023539
Unique NameTCONS_00023539
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1635

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023539 ID=TCONS_00023539|Name=TCONS_00023539|organism=Clytia hemisphaerica|type=transcript|length=1635bp
TGtcctttttgatattttatagtGACATacttgacttttgaaaaattgaa
aaaagtgatTTTGCTCATAACAACAAAGGAATTTCGCCCTCTCGGCCCTG
CTAAGATTAAAAAAAGgtTAATAGATAAATGAAAATGTCTTTGGCTATAA
GGAAAGCAAACTCCTTACAGATTCTTCGAAAATCATTTACTTCACAAGCT
CAAAGGTCACTTTCAGTAAATTCTGCATTATTATCAAATGATAAAACAGA
TGTGAAACCAAAAACTGGTATACTAATGTTGAATATGGGAGGTCCATCTA
CATTAGATGAGGTTGGAGAATTTTTAAGTAGACTTTTCCATGACAAGGAC
CTTATTCCATTACCTGCTCAAAAGCAATTAGCACCTTTCATTGCAGCAAG
GAGAACACCTAAAATCATTGAACAATATCGTAAGATTGGAGGTGGCTCTC
CTATTAGAATGTGGTCAGAATTGCAAGGTGAGAGAATGGTGGAGATATTG
GATAAAATATCCCCTGAAACTGCACCTCATAAATCTTATGTAGGTTTCAG
ATATGCCAATCCACTAACTGAGGATGCTTTATCACAAATGGAGAGAGATG
GAATCGAAAGAGCAATAGCTTTTACCCAATATCCACAGTATTCATGCTCT
ACAACAGGGAGCAGTCTGAATGCAATGTATAGATATTACAATAAATTGAA
TGTTCCCTCCAAAATCGACTGGTCTGTTATCGATAGGTGGCCAACTCATC
CAGGCTTGATTCAAGCTTTTGCTCAAACCATTACAGACGAGTTAGAAAAA
TTTCCACCTGAAGTAAAAGATGATGTTGTCATCATTTTCTCAGCGCATTC
TTTACCAATGTCTGTGGTGAACAGAGGAGACCCGTACCCTCAAGAAGTTG
CTGCAACTGTACAGAGAGTGATGGAGATGCTAGGTTTCTCTCATACTTAC
CGATTATGTTGGCAATCTAAGGTTGGTCCACTCCCTTGGTTAGGTCCTCA
AACTGATGATGCAATCAAAGGCTTAGCTGAGAATggaaataaaaatcttt
tgttggTACCAATCGCTTTTACTTCTGATCATATCGAGACTTTGCATGAG
CTTGATTTAGAATATGCAGAGGAATTGGCTGAAGAAGTTGGTGTAGAAAA
CATCAGGCGATCCAATGCAATGAATGATAATACAATCTTTATTCAAGCAA
TGGCTGATCTTGTTCGTAGCCATATCAAATCTGGAGATGCTTGCTCTAAA
CAACTAGGCTTACGATGCCCAATGTGTGTCAATGCAACTTGTGGACAAAC
CAAAAAGTTCTTCAAAAATAGGGGACAAATGGATTAAAAACACATTGCAA
TTTAAATGATGGgtttttagatattttgctAGATGAATACATTTTTACAA
catatttcattcaaaatacaaacttttttatttttaagcccAAAAGCAAA
AATGTACATAGAATTAGCTAACATActtattttttggattttgcgGGTGT
TTGTGAcagtttatttttattaataGCCTAGTGCTATATTTATGATAAGA
ACAGTATTACGAAAGGAAAGATTTATCTTCAACGGAATTTTACGTCTCTG
AGACTTTCTTTAAGATcctttactaaatgaaagcc
Run BLAST on NCBI

protein sequence of TCONS_00023539-protein

>TCONS_00023539-protein ID=TCONS_00023539-protein|Name=TCONS_00023539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=402bp
MKMSLAIRKANSLQILRKSFTSQAQRSLSVNSALLSNDKTDVKPKTGILM
LNMGGPSTLDEVGEFLSRLFHDKDLIPLPAQKQLAPFIAARRTPKIIEQY
RKIGGGSPIRMWSELQGERMVEILDKISPETAPHKSYVGFRYANPLTEDA
LSQMERDGIERAIAFTQYPQYSCSTTGSSLNAMYRYYNKLNVPSKIDWSV
IDRWPTHPGLIQAFAQTITDELEKFPPEVKDDVVIIFSAHSLPMSVVNRG
DPYPQEVAATVQRVMEMLGFSHTYRLCWQSKVGPLPWLGPQTDDAIKGLA
ENGNKNLLLVPIAFTSDHIETLHELDLEYAEELAEEVGVENIRRSNAMND
NTIFIQAMADLVRSHIKSGDACSKQLGLRCPMCVNATCGQTKKFFKNRGQ
MD
Run BLAST on NCBI

transcript from alignment at sc0000456:41990..43735+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023539 ID=TCONS_00023539|Name=TCONS_00023539|organism=Clytia hemisphaerica|type=transcript|length=1746bp|location=Sequence derived from alignment at sc0000456:41990..43735+ (Clytia hemisphaerica)
TGtcctttttgatattttatagtGACATacttgacttttgaaaaattgaa
aaaagtgatTTTGCTCATAACAACAAAGGAATTTCGCCCTCTCGGCCCTG
CTAAGATTAAAAAAAGGTAAGCTCAAGTAGGGTTTATGAAAACCATGCAA
AATGCAGTTGAAATAAGATGCGGCACCTGTCCCAAGAGAAAACTAACATA
CAAccatttattttctattttttttaggtTAATAGATAAATGAAAATGTC
TTTGGCTATAAGGAAAGCAAACTCCTTACAGATTCTTCGAAAATCATTTA
CTTCACAAGCTCAAAGGTCACTTTCAGTAAATTCTGCATTATTATCAAAT
GATAAAACAGATGTGAAACCAAAAACTGGTATACTAATGTTGAATATGGG
AGGTCCATCTACATTAGATGAGGTTGGAGAATTTTTAAGTAGACTTTTCC
ATGACAAGGACCTTATTCCATTACCTGCTCAAAAGCAATTAGCACCTTTC
ATTGCAGCAAGGAGAACACCTAAAATCATTGAACAATATCGTAAGATTGG
AGGTGGCTCTCCTATTAGAATGTGGTCAGAATTGCAAGGTGAGAGAATGG
TGGAGATATTGGATAAAATATCCCCTGAAACTGCACCTCATAAATCTTAT
GTAGGTTTCAGATATGCCAATCCACTAACTGAGGATGCTTTATCACAAAT
GGAGAGAGATGGAATCGAAAGAGCAATAGCTTTTACCCAATATCCACAGT
ATTCATGCTCTACAACAGGGAGCAGTCTGAATGCAATGTATAGATATTAC
AATAAATTGAATGTTCCCTCCAAAATCGACTGGTCTGTTATCGATAGGTG
GCCAACTCATCCAGGCTTGATTCAAGCTTTTGCTCAAACCATTACAGACG
AGTTAGAAAAATTTCCACCTGAAGTAAAAGATGATGTTGTCATCATTTTC
TCAGCGCATTCTTTACCAATGTCTGTGGTGAACAGAGGAGACCCGTACCC
TCAAGAAGTTGCTGCAACTGTACAGAGAGTGATGGAGATGCTAGGTTTCT
CTCATACTTACCGATTATGTTGGCAATCTAAGGTTGGTCCACTCCCTTGG
TTAGGTCCTCAAACTGATGATGCAATCAAAGGCTTAGCTGAGAATggaaa
taaaaatcttttgttggTACCAATCGCTTTTACTTCTGATCATATCGAGA
CTTTGCATGAGCTTGATTTAGAATATGCAGAGGAATTGGCTGAAGAAGTT
GGTGTAGAAAACATCAGGCGATCCAATGCAATGAATGATAATACAATCTT
TATTCAAGCAATGGCTGATCTTGTTCGTAGCCATATCAAATCTGGAGATG
CTTGCTCTAAACAACTAGGCTTACGATGCCCAATGTGTGTCAATGCAACT
TGTGGACAAACCAAAAAGTTCTTCAAAAATAGGGGACAAATGGATTAAAA
ACACATTGCAATTTAAATGATGGgtttttagatattttgctAGATGAATA
CATTTTTACAAcatatttcattcaaaatacaaacttttttatttttaagc
ccAAAAGCAAAAATGTACATAGAATTAGCTAACATActtattttttggat
tttgcgGGTGTTTGTGAcagtttatttttattaataGCCTAGTGCTATAT
TTATGATAAGAACAGTATTACGAAAGGAAAGATTTATCTTCAACGGAATT
TTACGTCTCTGAGACTTTCTTTAAGATcctttactaaatgaaagcc

Coding sequence (CDS) from alignment at sc0000456:41990..43735+

>TCONS_00023539 ID=TCONS_00023539|Name=TCONS_00023539|organism=Clytia hemisphaerica|type=CDS|length=1209bp|location=Sequence derived from alignment at sc0000456:41990..43735+ (Clytia hemisphaerica)
ATGAAAATGTCTTTGGCTATAAGGAAAGCAAACTCCTTACAGATTCTTCG
AAAATCATTTACTTCACAAGCTCAAAGGTCACTTTCAGTAAATTCTGCAT
TATTATCAAATGATAAAACAGATGTGAAACCAAAAACTGGTATACTAATG
TTGAATATGGGAGGTCCATCTACATTAGATGAGGTTGGAGAATTTTTAAG
TAGACTTTTCCATGACAAGGACCTTATTCCATTACCTGCTCAAAAGCAAT
TAGCACCTTTCATTGCAGCAAGGAGAACACCTAAAATCATTGAACAATAT
CGTAAGATTGGAGGTGGCTCTCCTATTAGAATGTGGTCAGAATTGCAAGG
TGAGAGAATGGTGGAGATATTGGATAAAATATCCCCTGAAACTGCACCTC
ATAAATCTTATGTAGGTTTCAGATATGCCAATCCACTAACTGAGGATGCT
TTATCACAAATGGAGAGAGATGGAATCGAAAGAGCAATAGCTTTTACCCA
ATATCCACAGTATTCATGCTCTACAACAGGGAGCAGTCTGAATGCAATGT
ATAGATATTACAATAAATTGAATGTTCCCTCCAAAATCGACTGGTCTGTT
ATCGATAGGTGGCCAACTCATCCAGGCTTGATTCAAGCTTTTGCTCAAAC
CATTACAGACGAGTTAGAAAAATTTCCACCTGAAGTAAAAGATGATGTTG
TCATCATTTTCTCAGCGCATTCTTTACCAATGTCTGTGGTGAACAGAGGA
GACCCGTACCCTCAAGAAGTTGCTGCAACTGTACAGAGAGTGATGGAGAT
GCTAGGTTTCTCTCATACTTACCGATTATGTTGGCAATCTAAGGTTGGTC
CACTCCCTTGGTTAGGTCCTCAAACTGATGATGCAATCAAAGGCTTAGCT
GAGAATggaaataaaaatcttttgttggTACCAATCGCTTTTACTTCTGA
TCATATCGAGACTTTGCATGAGCTTGATTTAGAATATGCAGAGGAATTGG
CTGAAGAAGTTGGTGTAGAAAACATCAGGCGATCCAATGCAATGAATGAT
AATACAATCTTTATTCAAGCAATGGCTGATCTTGTTCGTAGCCATATCAA
ATCTGGAGATGCTTGCTCTAAACAACTAGGCTTACGATGCCCAATGTGTG
TCAATGCAACTTGTGGACAAACCAAAAAGTTCTTCAAAAATAGGGGACAA
ATGGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013235XLOC_013235Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023539-proteinTCONS_00023539-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023539-exon-sc0000456-1491911889:41990..42105TCONS_00023539-exon-sc0000456-1491911889:41990..42105Clytia hemisphaericaexon
TCONS_00023539-exon-sc0000456-1510915933:41990..42105TCONS_00023539-exon-sc0000456-1510915933:41990..42105Clytia hemisphaericaexon
TCONS_00023539-exon-sc0000456-1575043694:41990..42105TCONS_00023539-exon-sc0000456-1575043694:41990..42105Clytia hemisphaericaexon
TCONS_00023539-exon-sc0000456-1491911889:42217..43735TCONS_00023539-exon-sc0000456-1491911889:42217..43735Clytia hemisphaericaexon
TCONS_00023539-exon-sc0000456-1510915933:42217..43735TCONS_00023539-exon-sc0000456-1510915933:42217..43735Clytia hemisphaericaexon
TCONS_00023539-exon-sc0000456-1575043694:42217..43735TCONS_00023539-exon-sc0000456-1575043694:42217..43735Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:41990..43735 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
72.2484	64.8258	10.6866	11.1891	13.6696	6.48116	7.81924	14.6406	29.8964	33.8575	28.7568	18.9024	10.7863	4.20065	14.3896	12.9715	18.2626	13.259	5.38766	7.89292	32.1674	29.7017	66.4548	57.4259	0	4.85646	38.5492	26.2499	44.2985	44.8995
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001015Ferrochelatase
IPR019772Ferrochelatase_AS
IPR033659Ferrochelatase_N
IPR033644Ferrochelatase_C
Vocabulary: Biological Process
TermDefinition
GO:0006783heme biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0004325ferrochelatase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006783 heme biosynthetic process
molecular_function GO:0004325 ferrochelatase activity
Blast
[Close]
BLAST of TCONS_00023539 vs. Swiss-Prot (Human)
Match: HEMH (Ferrochelatase, mitochondrial OS=Homo sapiens GN=FECH PE=1 SV=2)

HSP 1 Score: 479.174 bits (1232), Expect = 9.235e-165
Identity = 245/356 (68.82%), Postives = 297/356 (83.43%), Query Frame = 3 
Query:  255 KPKTGILMLNMGGPSTLDEVGEFLSRLFHDKDLIPLPAQKQLAPFIAARRTPKIIEQYRKIGGGSPIRMWSELQGERMVEILDKISPETAPHKSYVGFRYANPLTEDALSQMERDGIERAIAFTQYPQYSCSTTGSSLNAMYRYYNKLNVPSKIDWSVIDRWPTHPGLIQAFAQTITDELEKFPPEVKDDVVIIFSAHSLPMSVVNRGDPYPQEVAATVQRVMEMLGFSHTYRLCWQSKVGPLPWLGPQTDDAIKGLAENGNKNLLLVPIAFTSDHIETXXXXXXXXXXXXXXXXXXXNIRRSNAMNDNTIFIQAMADLVRSHIKSGDACSKQLGLRCPMCVNATCGQTKKFFKNR 1322
            KPKTGILMLNMGGP TL +V +FL RLF D+DL+ LP Q +LAPFIA RRTPKI EQYR+IGGGSPI++W+  QGE MV++LD++SP TAPHK Y+GFRY +PLTE+A+ +MERDG+ERAIAFTQYPQYSCSTTGSSLNA+YRYYN++     + WS IDRWPTH  LIQ FA  I  EL+ FP E + +VVI+FSAHSLPMSVVNRGDPYPQEV+ATVQ+VME L + + YRL WQSKVGP+PWLGPQTD++IKGL E G KN+LLVPIAFTSDHIETL+ELD+EY++ LA+E GVENIRR+ ++N N +F +A+ADLV SHI+S + CSKQL L CP+CVN  C +TK FF ++
Sbjct:   66 KPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQ 421
The following BLAST results are available for this feature:
BLAST of TCONS_00023539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HEMH9.235e-16568.82Ferrochelatase, mitochondrial OS=Homo sapiens GN=F... [more]
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