TCONS_00023535 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023535
Unique NameTCONS_00023535
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023535 ID=TCONS_00023535|Name=TCONS_00023535|organism=Clytia hemisphaerica|type=transcript|length=400bp
AAACAGTTTTTCGTGTCTCACATTCTAGACAGGCCTGTTCATAacaaaaa
atcaggattttCTAGCCTAGCTGAGCGCGTACTACTTAGGTAAAGAATGT
GTCAGTTTGTTTCGCTTAGCTTGCGAGCgtgcaaaatatatatttaaagg
tatttcaaaatcaaaacaaatatggtagacaATCTAAATtggatgttaaa
aaaaattggctggATGAAGTTGCTTGACAACGAACAGTCAGTCTTAAAGA
TAAAGGTTATCAGTTAAGAGTTAATCAAAGATAGAATAGCAGTTAGCGGT
TTTTTAACATAAGTTTTCAAACTAAAGTTTTGTATAAATTCTGTTGATGT
TTTTGAGCATAGGCGGGTAGCggggttttctcaaaatcttcaagtttCAG
Run BLAST on NCBI

transcript from alignment at sc0000455:326011..326410

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023535 ID=TCONS_00023535|Name=TCONS_00023535|organism=Clytia hemisphaerica|type=transcript|length=400bp|location=Sequence derived from alignment at sc0000455:326011..326410 (Clytia hemisphaerica)
CTGaaacttgaagattttgagaaaaccccGCTACCCGCCTATGCTCAAAA
ACATCAACAGAATTTATACAAAACTTTAGTTTGAAAACTTATGTTAAAAA
ACCGCTAACTGCTATTCTATCTTTGATTAACTCTTAACTGATAACCTTTA
TCTTTAAGACTGACTGTTCGTTGTCAAGCAACTTCATccagccaattttt
tttaacatccaATTTAGATtgtctaccatatttgttttgattttgaaata
cctttaaatatatattttgcacGCTCGCAAGCTAAGCGAAACAAACTGAC
ACATTCTTTACCTAAGTAGTACGCGCTCAGCTAGGCTAGaaaatcctgat
tttttgtTATGAACAGGCCTGTCTAGAATGTGAGACACGAAAAACTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013232XLOC_013232Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023535-exon-sc0000455-1491911889:326011..326410TCONS_00023535-exon-sc0000455-1491911889:326011..326410Clytia hemisphaericaexon
TCONS_00023535-exon-sc0000455-1510915933:326011..326410TCONS_00023535-exon-sc0000455-1510915933:326011..326410Clytia hemisphaericaexon
TCONS_00023535-exon-sc0000455-1575043694:326011..326410TCONS_00023535-exon-sc0000455-1575043694:326011..326410Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000455supercontigsc0000455:326011..326410 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.708783	0.907985	1.11681	1.23455	2.61858e-07	0	2.22325	1.34141	1.9455	0.505047	1.64826	1.80077	0.892271	2.00781	0.738314	0.167661	0.976079	0	0.718872	0.619863	1.4847	0.354144	0.380169	0.357169	0.603868	0.674953	1.05708	1.72453	0.752566	1.02868
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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