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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023520 ID=TCONS_00023520|Name=TCONS_00023520|organism=Clytia hemisphaerica|type=transcript|length=3627bpRun BLAST on NCBI protein sequence of TCONS_00023520-protein >TCONS_00023520-protein ID=TCONS_00023520-protein|Name=TCONS_00023520-protein|organism=Clytia hemisphaerica|type=polypeptide|length=694bp MWGRYETINVLIDNGANIAVKDDDDMSALDYAEDAEKHKKECIDALTRYRRun BLAST on NCBI transcript from alignment at sc0000455:271214..295973- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023520 ID=TCONS_00023520|Name=TCONS_00023520|organism=Clytia hemisphaerica|type=transcript|length=24760bp|location=Sequence derived from alignment at sc0000455:271214..295973- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000455:271214..295973- >TCONS_00023520 ID=TCONS_00023520|Name=TCONS_00023520|organism=Clytia hemisphaerica|type=CDS|length=14595bp|location=Sequence derived from alignment at sc0000455:271214..295973- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00023520 vs. Swiss-Prot (Human)
Match: ANKL1 (Ankyrin repeat and LEM domain-containing protein 1 OS=Homo sapiens GN=ANKLE1 PE=1 SV=2) HSP 1 Score: 199.519 bits (506), Expect = 2.522e-53 Identity = 104/270 (38.52%), Postives = 155/270 (57.41%), Query Frame = 1
Query: 1687 VLALTNMELKDQLISLGEKPGPISDTTRRVYQKHLVRIQQASTTGSHGDQKSKKEEKQLKDYTNEMRQIFLNTLTLPKDKGDSLEQEMSFVFENPE-KHTWREGTQKTSFNYILLDPRVTKNLADRGETMSFTEQFRTFVSAIFYIGKGKKSRPYEHFHEAAKYLRPDNKQS-KPSNKSNMVLDIWEQGYGVTTLHLFHSVIPVEAYTREACMIDAMSLSRLTNAKHGDFYGPASSWSTKKKRLLGIHLLMKALKIYLIEGERQIKQRDL 2490
V ++++EL L +LGE P PI+ TR++Y + L Q A + ++ E+ L T +P + D E ++ FE P+ WREG K+SF Y+LLDPR T++L R +++ E+ +TF+ AIFY+GKG ++RPY H EA + KQ + K +LDIW G GV +LH F V+ VEAYTREAC+++A+ + LTN K G YG + W ++R LG+HLL +AL ++L EGERQ+ +D+
Sbjct: 358 VSTVSDLELLKGLRALGENPHPITPFTRQLYHQQLEEAQIAPG-------------PEFSGHSLEL-AAALRTGCIPDVQAD--EDALAQQFEQPDPARRWREGVVKSSFTYLLLDPRETQDLPARAFSLTPAERLQTFIRAIFYVGKGTRARPYVHLWEALGHHGRSRKQPHQACPKVRQILDIWASGCGVVSLHCFQHVVAVEAYTREACIVEALGIQTLTNQKQGHCYGVVAGWPPARRRRLGVHLLHRALLVFLAEGERQLHPQDI 611 The following BLAST results are available for this feature:
BLAST of TCONS_00023520 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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