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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023212 ID=TCONS_00023212|Name=TCONS_00023212|organism=Clytia hemisphaerica|type=transcript|length=954bp
GTAAAAATCGAAATGGTGAAGAAACACAATATCAAACTAAAGATCACCAA
CGGTACAGGAAGCAGTTTGAAATACCACGGCGAATGGTTTGATTCAGGAC
GCTTGGCTGATGGATTTCGATGGCCTGAACTCATCCAAGATGGCGGAAAA
GAAACCGTGCTCTGCTATgaaaGGGATTGGGCAATGGCTGGATGTTCAGG
GTACGTTCAATATCGAATCAACGGTCAAGTTTTAACGATCGGCTTTTCAA
ATCCTTCTGCTGGAAAGAATAAAGTTGGAGTCGGATTGACTGGTAAAAAG
ATATGGGATGAGATGGGATGCAACGATTATTCACCACACGTCACGACTTT
ACAGATGGAAACGTTCGTATTAAAATGCCATTATTCATGTACTGGAGGTG
CTACCAACAACATTGACATTGTACtggaaaatatagaaaacagAGTCAGA
GATGTTCATCCACTGAAAGTTGAAGAAGAAAGATGGGGAAGCAGTGGCGT
TCCAATACAACAAGAAAGTTATAGTGAATGTACGGAAAGTACGATCTATG
AAAGAAAGTTTATGAATGGTTATTGATATGAAAGTTGTGTGGAAAtttca
tgatattcattacgtaatgttttcaaatcGTACTGAAAAACGTATGGcaa
tattttaaacaattttttataaCTCAACTTTTCCGAGCTACCTAAAGCTG
ATAACTTGATTCTTTGAAACGTGAAAAAGTATAAATTCTGTAGTTGAAAT
CAGGAGGCATCACGATACTCCTGTACTGTATGTAATATATTAACTTAACA
GTTCGTACAATTTATCTACCActcttatattttttttcattatttttcat
agaaaaatacTATTTCAATTGGCAATATATTATCTCTTTATCGGATTAGC
TAGTGGCTAAATTTGAGGGGATATATTAGTGATACCCCATTTTTATTACC
TTGG Run BLAST on NCBI protein sequence of TCONS_00023212-protein >TCONS_00023212-protein ID=TCONS_00023212-protein|Name=TCONS_00023212-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
VKIEMVKKHNIKLKITNGTGSSLKYHGEWFDSGRLADGFRWPELIQDGGK
ETVLCYERDWAMAGCSGYVQYRINGQVLTIGFSNPSAGKNKVGVGLTGKK
IWDEMGCNDYSPHVTTLQMETFVLKCHYSCTGGATNNIDIVLENIENRVR
DVHPLKVEEERWGSSGVPIQQESYSECTESTIYERKFMNGY Run BLAST on NCBI transcript from alignment at sc0000447:184588..190608+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023212 ID=TCONS_00023212|Name=TCONS_00023212|organism=Clytia hemisphaerica|type=transcript|length=6021bp|location=Sequence derived from alignment at sc0000447:184588..190608+ (Clytia hemisphaerica)
GTAAAAATCGAAATGGTGAAGAAACACAATATCAAACTAAAGATCACCAA
CGGTACAGGAAGCAGTTTGAAATACCACGGCGAATGGTTTGATTCAGGAC
GCTTGGCTGATGGATTTCGATGGCCTGAACTCATCCAAGATGGCGGAAAA
GAAACCGTGCTCTGCTATgaaagtacatgttttttttataagcatacaaa
aatccaaaagctgGTTCGGAAATACTTAGATCGAGAGATTTAtaaagctg
aaaaatgctttgagGGATGCTTAGATCctaaacaaaattttagagaaatt
tcgaaaatccagccaaaaacaaaggaattctGAAAAGGAAGGCTGAAAGT
AAtgtttagcatatgcttaaatttttgccatatatgagcctagatatgct
tataagcgcaatgcttataaaaaaatcatttatgtGTTGAATTCTCTTCC
AGGGGAGGGCACTTAGTCGAAACAGGTGACGGGTTATGTGCGAGCATGAA
CATGGTGTGAGCTAAAAAGGCACCCTTTTTCATTAACTCAAAAGTCTATC
AAAGGGGTGTAAATTCATATGTTAGTCAGAGGATCCCAAAATAATTACTT
TCTCCTCTCAAGGATCACGATTTACAAAACTTACGACCTAAATTTGATGA
AAGTCAATCAAAATTTGCAACAAATCACccaaaatattggtaaaaagagt
ctcaaaattgggaaaaaaaattctcacaaaGGTCGAATACCCATCACCTC
GCAAACTTAGTATACCCGCTAAGGAGGAATAATCATATATTGAATCAAGC
TGATTAACTCTGCTAAATCTGTACTCGCATCGACACTAAGAGTTTATAGT
GACGAATTTTAAAGTCAAAACTCGGTCGATCTTACCAAGTATCGCTATCA
GCCTTCTATACAGTCCAGTGGCTAAAAGAAAAACTCTCAATCATAAATTT
AAAACCCCCTAAGACATGCAATGAAGTCTCCtcgaaaaacttttaaaata
aaattatgtATTTTAGGGGATTGGGCAATGGCTGGATGTTCAGGGTACGT
TCAATATCGAATCAACGGTCAAGTTTTAACGATCGGCTTTTCAAATCCTT
CTGCTGGAAAGAATAAAGTTGGAGTCGGATTGACTGGTAAAAAGGTATGA
TTTCTAACACTTACCAAAGTCAAACCCAGTCCCGTAAAAGAAATGCTGGA
AGGGGCTCTGGGTACGAGTTTTGGTAAGATTAACCGTGCAAAAAGAATGC
ACCAACTTATGGGGCGTCGAAAGCTCCGTACGGATAGATCAATAATTTTC
AGACACTCACCCTTGCTACCTTCATCCTGCCGagtaaaaaaacaataaat
ttggTTTAGTCTTTTCTTAACCCTACCTGGATGTTTATGTGCTTATCTGA
TAAAGGAAATTCGATGTTTGTTGtacttaaaaaaatactttcctaAAAGT
TTAGAGCTTGGATATGCAGGTTTCTATTAACAATGCGCATTCATAGAACT
TTGGATAAACCCCTTTTACTCGAAATAATCACCATAAATGAATACCTTTT
GCATAAAGATATGGGATGAGATGGGATGCAACGATTATTCACCACACGTC
ACGACTTTACAGATGGAAACGTTCGTATTAAAATGCCATTATTCATGTAC
TGGAGGTGCTACCAACAACATTGACATTGTACtggaaaatatagaaaaca
gGTTTGTGATGTATTACACTATCATCGGTAAAAAAGATTCGATGAACGCC
GAAACGAGTAATTCATTATATCCACATTTGCAATTTCCTTTAGTAATAAC
GTAGACCCAAGGTGGGGGGAttgggcaaaaaggggtacggGGATGTACCG
CTGGTCAAtgtaccttttttcacctctatgagtcccaggtagggtcgcaa
aaacaccgaAATAGAAAAACCAGTCCCTCGTAGATTACCTTTTGGGGAGA
ATTtggaaaaatatggaaatttttgagaaaatcttggaatttcagtccta
ttcagggtcactttaaaaaaaaaaagagtcaccgtagggtccatttttcg
aacttcagcggCACACCCCTGTCGGTCAGCAAGGGTAGTTTCCCCTCAAG
ATGTAGACCttacagctgattggttgtaagtaaTTTAAAATCAGTCAGTA
GTTCACTAGCAACCAATCAGCTGGTTTTTTCCGTAATGTAATGTTAGAGG
ACATAGCAATGGTGCATATCTTGAATAAACGTTACAGCGTAGAAATAAAG
TCGTCTAGTAGAGGCTAGGTTTAACAGGGATTTGACAcgttgaaattatt
tttgttaatttctttttattatcaaaGACTCAACTTTAAAAGTCGTCTTA
TTACAGTGTgaaccactacatagaaatggcaactattaCCTTAACgtgaa
atatttcccgaacgggaaggtgaaaataacccaaaaaggaaactgtttcc
agattgaaaatttcatcacttttctgtttcccgTCTTGGTCAATAACTGT
TCATTGTTCCCGATcgggaagttgaatttttgtaaagaaagcagattttt
gtttcccgatcgagaagaagtttccaaatagggaagtttttaattgggaa
tggggaaagtagaattaagaagcgattacccggtggatttcttaaGTACC
CGGTGAAGGGTATTTATTTACCTTCTTTTACAATAGGCATCAGTTATTTA
CCTTCCACGACCATTTCCGGAGTGCGCAGAGGTCacattcccgatcggga
aactggTTAACTTCCTGATTCGGAAACNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNggaattattaacaatttagcccct
tcgtatttacgtaactacctgccagtaagacttacagcaccaggtggcct
tagaacaagaaatcctatttatcctcctaatatacgaactgaacgtttcc
gtaacactttttttccgtactgcatatctcagtggaatgttctaagaggt
aatatacgagatctaccttcaattaaaactttcaaaaaagcaatctatga
atttttgagacccaagcaatcccatgtttttgatgttcctgacattcaag
gagtgatctttcttaatcgacttcgggtcggtttcagccatctcaacgag
cataaatttagacatggcttccgcgacactttagaccctttctgtggttg
ccgaactaactctgttgaaaacactcaacactttcttctgcactgctcta
tatattcccatgcaagacaatctttgttcgacaaacttcagaccctaggc
attatttttcatccgccacttaaccctccttttttctgtcggcttttatt
atatggggatgaaagtttgacttcaaatctaaataaatctattctttgtt
ctgttgttgaatttcttaacgaaactggaaggtttagcggtgctttattt
taggcttttacctaacaactgtagcttccttctccaagattttttctttt
tattttctttatttacttatttatttattttttacatagtctaaagtctg
ttcacgataagtgtgcactcttttttcttttacctataactttggAAGGA
ATTCTttgttctttataaatttggtatcgttgggagagatatttgtaagt
ggaacaatttgaagtaaaaaagtctttaaaaaaattctaaagacgaagat
gaaaatgaagaagaaaaaaatgaagatcttgtagagaagtgctataactt
tcattttcactggagagattttttgatcttaggaggtatCACCACTGTGA
AGAAAtgtcactaaaatatttattcaatataaagttatgatacaaagtta
ataagtgattgaccccaaaaaacagcagaaaacagcagaaaacagcgttt
ttagacgtcaattagcttataactttgtttgatatcttttgactgaatga
ttagttttgagaaattttttcacagtgataacgTTCGATAATTAAGgagt
cacttcagtgaaaatgatagttatagcacctttctacaagatcttcattt
ttttcttcttcattttcatcttcatttttagaatttttttatNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttttacttc
aaattgttccactcacaaatatctctccaacgataccaaatttgtaaaga
ttgaagaattccttcaaaagttataggtaaatgaaaaaagagtgcacact
tatcgtgaatagacttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTt
tcccgttttttttttttaaaaaaaaaaaaaaaaaaaaaaaaatttcggga
agtttttcaccttcccgttcgggaaatatttcccgttaaggcaatagttg
ccatttctatgtagtggttccgactgTATTAGGAGTTGAAATTtgcaatt
ttctttaaaaaaacttagcaaaaaatgaccgaggcacttaaagggtttac
cccaatttattgaatatttaggataagaTAAGCATTTAGACTTGaggaac
ttttttctaaagcctttgttagaatagaatagctatttataagaacaaat
gaaattttcggtttttgctcactttgggcatgatgagtgatgtcatcaaa
aacaatttttgacaaaaagttaCCTTGTATGACAAAGGATCATGTGTGCC
AAATTCCATTCAAAAAGACCCcccagatcaaaagttaaggggtagTACAG
GAACATCCTTCCCCCTAGTTTGAGCCACCCCTATGAATAGAGTTAAAgag
atctcgagaaatcgctaaaattgaaaACCTACGTTTCgaccattagaaaa
aagctactttAAGCGatcgaaaaattgttgaaattgaaaattttagtaaa
gtactttcgggaaataaagtagagatgttaaagtttttcatgcagcaaaa
ctttttatttttaaaacttttttttcccctggatttgagagaaatttttg
atttaattgacgttttgggggccacagaATATACTGTACTTAATGACTCG
ACTTTAAAAGTCGTCTTTTTAGGGGTTGAAATTTGTacacaaaaatacaa
tttctttTAGAGTCAGAGATGTTCATCCACTGAAAGTTGAAGAAGAAAGA
TGGGGAAGCAGTGGCGTTCCAATACAACAAGAAAGTTATAGTGAATGTAC
GGAAAGTACGATCTATGAAAGAAAGTTTATGAATGGTTATTGATATGAAA
GTTGTGTGGAAAtttcatgatattcattacgtaatgttttcaaatcGTAC
TGAAAAACGTATGGcaatattttaaacaattttttataaCTCAACTTTTC
CGAGCTACCTAAAGCTGATAACTTGATTCTTTGAAACGTGAAAAAGTATA
AATTCTGTAGTTGAAATCAGGAGGCATCACGATACTCCTGTACTGTATGT
AATATATTAACTTAACAGTTCGTACAATTTATCTACCActcttatatttt
ttttcattatttttcatagaaaaatacTATTTCAATTGGCAATATATTAT
CTCTTTATCGGATTAGCTAGTGGCTAAATTTGAGGGGATATATTAGTGAT
ACCCCATTTTTATTACCTTGG Coding sequence (CDS) from alignment at sc0000447:184588..190608+ >TCONS_00023212 ID=TCONS_00023212|Name=TCONS_00023212|organism=Clytia hemisphaerica|type=CDS|length=2304bp|location=Sequence derived from alignment at sc0000447:184588..190608+ (Clytia hemisphaerica)
GTAAAAATCGAAATGGTGAAGAAACACAATATCAAACTAAAGATCACCAA
CGGTACAGGAAGCAGTTTGAAATACCACGGCGAATGGTTTGATTCAGGAC
GCTTGGCTGATGGATTTCGATGGCCTGAACTCATCCAAGATGGCGGAAAA
GAAACCGTGCTCTGCTATgaaaGGGATTGGGCAATGGCTGGATGTTCAGG
GTACGTTCAATATCGAATCAACGGTCAAGTTTTAACGATCGGCTTTTCAA
ATCCTTCTGCTGGAAAGAATAAAGTTGGAGTCGGATTGACTGGTAAAAAG
ATATGGGATGAGATGGGATGCAACGATTATTCACCACACGTCACGACTTT
ACAGATGGAAACGTTCGTATTAAAATGCCATTATTCATGTACTGGAGGTG
CTACCAACAACATTGACATTGTACtggaaaatatagaaaacagAGTCAGA
GATGTTCATCCACTGAAAGTTGAAGAAGAAAGATGGGGAAGCAGTGGCGT
TCCAATACAACAAGAAAGTTATAGTGAATGTACGGAAAGTACGATCTATG
AAAGAAAGTTTATGAATGGTTATTGAGTAAAAATCGAAATGGTGAAGAAA
CACAATATCAAACTAAAGATCACCAACGGTACAGGAAGCAGTTTGAAATA
CCACGGCGAATGGTTTGATTCAGGACGCTTGGCTGATGGATTTCGATGGC
CTGAACTCATCCAAGATGGCGGAAAAGAAACCGTGCTCTGCTATgaaaGG
GATTGGGCAATGGCTGGATGTTCAGGGTACGTTCAATATCGAATCAACGG
TCAAGTTTTAACGATCGGCTTTTCAAATCCTTCTGCTGGAAAGAATAAAG
TTGGAGTCGGATTGACTGGTAAAAAGATATGGGATGAGATGGGATGCAAC
GATTATTCACCACACGTCACGACTTTACAGATGGAAACGTTCGTATTAAA
ATGCCATTATTCATGTACTGGAGGTGCTACCAACAACATTGACATTGTAC
tggaaaatatagaaaacagAGTCAGAGATGTTCATCCACTGAAAGTTGAA
GAAGAAAGATGGGGAAGCAGTGGCGTTCCAATACAACAAGAAAGTTATAG
TGAATGTACGGAAAGTACGATCTATGAAAGAAAGTTTATGAATGGTTATT
GAGTAAAAATCGAAATGGTGAAGAAACACAATATCAAACTAAAGATCACC
AACGGTACAGGAAGCAGTTTGAAATACCACGGCGAATGGTTTGATTCAGG
ACGCTTGGCTGATGGATTTCGATGGCCTGAACTCATCCAAGATGGCGGAA
AAGAAACCGTGCTCTGCTATgaaaGGGATTGGGCAATGGCTGGATGTTCA
GGGTACGTTCAATATCGAATCAACGGTCAAGTTTTAACGATCGGCTTTTC
AAATCCTTCTGCTGGAAAGAATAAAGTTGGAGTCGGATTGACTGGTAAAA
AGATATGGGATGAGATGGGATGCAACGATTATTCACCACACGTCACGACT
TTACAGATGGAAACGTTCGTATTAAAATGCCATTATTCATGTACTGGAGG
TGCTACCAACAACATTGACATTGTACtggaaaatatagaaaacagAGTCA
GAGATGTTCATCCACTGAAAGTTGAAGAAGAAAGATGGGGAAGCAGTGGC
GTTCCAATACAACAAGAAAGTTATAGTGAATGTACGGAAAGTACGATCTA
TGAAAGAAAGTTTATGAATGGTTATTGAGTAAAAATCGAAATGGTGAAGA
AACACAATATCAAACTAAAGATCACCAACGGTACAGGAAGCAGTTTGAAA
TACCACGGCGAATGGTTTGATTCAGGACGCTTGGCTGATGGATTTCGATG
GCCTGAACTCATCCAAGATGGCGGAAAAGAAACCGTGCTCTGCTATgaaa
GGGATTGGGCAATGGCTGGATGTTCAGGGTACGTTCAATATCGAATCAAC
GGTCAAGTTTTAACGATCGGCTTTTCAAATCCTTCTGCTGGAAAGAATAA
AGTTGGAGTCGGATTGACTGGTAAAAAGATATGGGATGAGATGGGATGCA
ACGATTATTCACCACACGTCACGACTTTACAGATGGAAACGTTCGTATTA
AAATGCCATTATTCATGTACTGGAGGTGCTACCAACAACATTGACATTGT
ACtggaaaatatagaaaacagAGTCAGAGATGTTCATCCACTGAAAGTTG
AAGAAGAAAGATGGGGAAGCAGTGGCGTTCCAATACAACAAGAAAGTTAT
AGTGAATGTACGGAAAGTACGATCTATGAAAGAAAGTTTATGAATGGTTA
TTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023212-exon-sc0000447-1491911889:184588..184759 | TCONS_00023212-exon-sc0000447-1491911889:184588..184759 | Clytia hemisphaerica | exon |
| TCONS_00023212-exon-sc0000447-1510915933:184588..184759 | TCONS_00023212-exon-sc0000447-1510915933:184588..184759 | Clytia hemisphaerica | exon |
| TCONS_00023212-exon-sc0000447-1575043694:184588..184759 | TCONS_00023212-exon-sc0000447-1575043694:184588..184759 | Clytia hemisphaerica | exon |
| TCONS_00023212-exon-sc0000447-1491911889:185604..185731 | TCONS_00023212-exon-sc0000447-1491911889:185604..185731 | Clytia hemisphaerica | exon |
| TCONS_00023212-exon-sc0000447-1510915933:185604..185731 | TCONS_00023212-exon-sc0000447-1510915933:185604..185731 | Clytia hemisphaerica | exon |
| TCONS_00023212-exon-sc0000447-1575043694:185604..185731 | TCONS_00023212-exon-sc0000447-1575043694:185604..185731 | Clytia hemisphaerica | exon |
| TCONS_00023212-exon-sc0000447-1491911889:186146..186288 | TCONS_00023212-exon-sc0000447-1491911889:186146..186288 | Clytia hemisphaerica | exon |
| TCONS_00023212-exon-sc0000447-1510915933:186146..186288 | TCONS_00023212-exon-sc0000447-1510915933:186146..186288 | Clytia hemisphaerica | exon |
| TCONS_00023212-exon-sc0000447-1575043694:186146..186288 | TCONS_00023212-exon-sc0000447-1575043694:186146..186288 | Clytia hemisphaerica | exon |
| TCONS_00023212-exon-sc0000447-1491911889:190098..190608 | TCONS_00023212-exon-sc0000447-1491911889:190098..190608 | Clytia hemisphaerica | exon |
| TCONS_00023212-exon-sc0000447-1510915933:190098..190608 | TCONS_00023212-exon-sc0000447-1510915933:190098..190608 | Clytia hemisphaerica | exon |
| TCONS_00023212-exon-sc0000447-1575043694:190098..190608 | TCONS_00023212-exon-sc0000447-1575043694:190098..190608 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000447 | supercontig | sc0000447:184588..190608 + |
Blast
The following BLAST results are available for this feature:
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