TCONS_00023165 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023165
Unique NameTCONS_00023165
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length205

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023165 ID=TCONS_00023165|Name=TCONS_00023165|organism=Clytia hemisphaerica|type=transcript|length=205bp
GATTCTTTCAATGTTATTTATagtgaaaaaatagaaattaaaaagtgaga
aaaaataCAGACAATGGCATTTTGAGGAGATCACACATTAAACCGAATGg
CAAAGTTCATTGCTCAAATGATCGTCCTTGGTGGACAAATTGTGGGGAAA
GCATTTGCACAAGCACTCAAACAGGAGTTTGCAGGTATGAGAACTTGAGT
AATTG
Run BLAST on NCBI

transcript from alignment at sc0000444:193230..193719+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023165 ID=TCONS_00023165|Name=TCONS_00023165|organism=Clytia hemisphaerica|type=transcript|length=490bp|location=Sequence derived from alignment at sc0000444:193230..193719+ (Clytia hemisphaerica)
GATTCTTTCAATGTTATTTATagtgaaaaaatagaaattaaaaagtgaga
aaaaataCAGACAATGGCATTTTGAGGAGATCACACATTAAACCGAATGG
TAAGTGTTTTATCGATCCCATTCctcataaaaagttttttttcctcGCCA
TCTCAAAAATGATGTAGATGACTTTTAAGTGAACAAAATTGATTTCCCAA
CGTAACTCGAGTAAGTCGACCGGAAATGAGGTCAAAAAGTAAAGTTCGAC
GTTAATTTTCTTGAGAATACTTCATTCTTTGAAATGTACTAGGTTTGGTT
ACATCGCATAAAAGATAACACGGGTCTAAGAGTTTGCCCCCTACTATCTA
TGGCTATATCAAGTTcgaaatatttaattttcaggCAAAGTTCATTGCTC
AAATGATCGTCCTTGGTGGACAAATTGTGGGGAAAGCATTTGCACAAGCA
CTCAAACAGGAGTTTGCAGGTATGAGAACTTGAGTAATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013019XLOC_013019Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023165-exon-sc0000444-1491911889:193230..193328TCONS_00023165-exon-sc0000444-1491911889:193230..193328Clytia hemisphaericaexon
TCONS_00023165-exon-sc0000444-1510915933:193230..193328TCONS_00023165-exon-sc0000444-1510915933:193230..193328Clytia hemisphaericaexon
TCONS_00023165-exon-sc0000444-1575043694:193230..193328TCONS_00023165-exon-sc0000444-1575043694:193230..193328Clytia hemisphaericaexon
TCONS_00023165-exon-sc0000444-1491911889:193614..193719TCONS_00023165-exon-sc0000444-1491911889:193614..193719Clytia hemisphaericaexon
TCONS_00023165-exon-sc0000444-1510915933:193614..193719TCONS_00023165-exon-sc0000444-1510915933:193614..193719Clytia hemisphaericaexon
TCONS_00023165-exon-sc0000444-1575043694:193614..193719TCONS_00023165-exon-sc0000444-1575043694:193614..193719Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000444supercontigsc0000444:193230..193719 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	58.5645	38.0144	25.9224	50.4033	18.2978	27.5215	17.2849	22.7248	35.0714	18.211	25.5403	17.0123	41.9154	26.2545	14.8386	13.8022	0	0	0	0	21.6479	22.2926	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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