TCONS_00023156 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023156
Unique NameTCONS_00023156
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023156 ID=TCONS_00023156|Name=TCONS_00023156|organism=Clytia hemisphaerica|type=transcript|length=2547bp
GTGAACATGAAAGAATCTTGtgcaaaaataataatagtATTGTCTGGAAA
ACGTAAATCTGGGAAAGATTATGTTGCAGATAACATAGTGAAGAAGATCT
CCCCAGAGAGATGCCATATCATGAGAGTAGCTTTACCtatcaaaaaacat
ttctgTGAGAAATACAACATGGACTATAAAGAAATGATGACCTCATCAGA
ATATAAAGAATTAAGACGAGCGGAGATGATCCAATGGGGTGAAGAACAAA
GGAATAAAGATACAGGAGTATTTTGCCGTACTGAGAAAAATTCAGCAATT
GATTCTGGGAAACCAGTTTGGATTCTAAGTGATGCACGCAGACCTAGTGA
TGTTAATTATTTTAGGGAATATGCCAGAAGCCTTGGTGTAACATTTTATG
CTATTCGTGTATCTGCAGATATAGAAACAAGAGAGGAGCGTGGTTGGAAG
TTTACAAAGAATGTTGATGATGTAGATTCTGAATGTGCCCTTGATTCTTA
TGACAAATGGGACTTTTGCtttgaaaattcacaaaatgatAGTGTTATTG
AAAAGGATATAAAGCAgcaaaatggtaaaatttgaaaattttgaaatctt
tgagAGCGAATCGAAAGGAAAGGGTCTACGTGCAATAACACATATTGATG
CTGGAGAGGAGATTTTACATGAAGAACCTCTAGTGTACACTTTGATGAAT
GCGAAATGTAGAGGAGGAAGATGTGATTATTGTTTTAGTGAAGATAGGAA
ATTATTCAAATGCTCAAAATGTAAATTTGTTTCATACTGTGGGCGTGAAT
GTCAATCTGGGGATTGGAAAATCCATAAATATGAATGTAAATGCTTGGTC
AAGGTTGCACCAAAACAACCACCTGATATCTGTCGTTTAGTATCACATCT
ATTGTTCAAATATTATACCTCAAACAAAAAGACTTCTGCCAATCCTTCAG
AGATTGAAGCCTTAACAGACAATCGTGGGAGAGTAACTAATTCACGTAAA
GAAGCATTTTTCACCTTTAGTGGTGTTTTGTTTGATTACCTCAAAGGATG
CACTTTCACTGATGATGCTGATATCTATGGATTGCTTTGTAGAATCTCAA
GCAACAGTTTCACAATCACTAATTCAGAGCTAAACTCCCTAGGGACAGGA
TTATACAAGACATCTTCTTTTCTTAACCATTCATGTGATCCCAACGTTGT
TGCAATCTTCAATGGCACCAAAATACACATCCGAACGATCAAGGAAGTGC
AAGAAGGAGAAGAGCTTTTTCTAAGCTACATCAACCTCTTAGCCACCACA
AAACATCGACAGTCTGAACTAATGGATGGGTACATGTTTACATGTAGTTG
CTCCAAATGTAATGGTAATGGGTTTTCAGACTTGATGATGTTGAGTATGA
AATGCCCACAATGCACCTGTCTGCAATCGCTTGATACACAATCAGAAAGA
TCGTGTGGATGTGACAAGAAGTGTGAAAGAAACAAATCAGCCATGTTGAA
AGCTCTCGATTGTATGGATTCTTTAGAAGCACTTTATAACTCAATTAACG
TCATCCCTACTCCAGACCAACACAAAAAGTTGGAACTGAAAATCTGTAAA
GGAAGACAGCTCTTGGGACATTGTAATATTGCATTACTACATGCTTATGA
AGTGGGTATGGACGGTTGTCTTGATTATTCGGACTGGAAAGGGGCTTTGG
AGTATGGCAAAAAGTTGGAGAAACTTTATCTCGTTTATCTGACGAAGAAC
CACCCGAGTATCGGTCTTCATTATTTTAAACAAGGAAAACTTGAGCTTCA
GATGGAAAATCTTCGTGAAGGGATCAGTTATTTTGAAAAAGCCATGAAGA
TACTTTGTATTTCACACGGAGAGAAACATGAGCTTGTGGTGTTATTACAA
GAAACTTTACAATCAGCTTTAATTGAGATAAACTGTGAACAGTTTGGTCA
CGTGGAAAATATGATGAAGATGGAAGAACAATAATTTGCTGCATGAAATT
CTGTTCCGTTTAATGATCTTGTGGAATTTTTATTATTGATTGCTGCATGT
TATGGTTCAAGATTATCACAGGAAAGATGGTAAAAAGCAGCGAGTTCCTT
TATTCTTTTGTTCATGTTTGGGAACTGGTTTCTTTTAGTTAAAAAAACAA
CCAGTGCTAGGAAGTGGCTATGGTTCCATCCTCACACTCTGGCCTGCACT
TTGAACATTTGCTGCTCGTCATCTCTTTGTATTGGGAACCAAAGACAGTC
AACAGTcaaccttttttttgaaatctttttatgACACACCTTACCTCATC
ATGCCGATTTATCAGATTTAGTTTTCATCATCATGCGGGACAAACAGTTA
GCGGCGGACATGTGTACAGCCCTGCTGAAAATGCAAATGTTAAGCAAGCA
CGGCTCTGACAGTGATGATTGTCCGATACCAACTGCTTGATGCCTCTTTT
GTTTGCATtattacttttgtttttattttatactcTTTGTACTTATGTTG
ATATTTTACTGATCGAGCAAAATAAAGAACTGTTACATACTTCTATG
Run BLAST on NCBI

protein sequence of TCONS_00023156-protein

>TCONS_00023156-protein ID=TCONS_00023156-protein|Name=TCONS_00023156-protein|organism=Clytia hemisphaerica|type=polypeptide|length=470bp
MVKFENFEIFESESKGKGLRAITHIDAGEEILHEEPLVYTLMNAKCRGGR
CDYCFSEDRKLFKCSKCKFVSYCGRECQSGDWKIHKYECKCLVKVAPKQP
PDICRLVSHLLFKYYTSNKKTSANPSEIEALTDNRGRVTNSRKEAFFTFS
GVLFDYLKGCTFTDDADIYGLLCRISSNSFTITNSELNSLGTGLYKTSSF
LNHSCDPNVVAIFNGTKIHIRTIKEVQEGEELFLSYINLLATTKHRQSEL
MDGYMFTCSCSKCNGNGFSDLMMLSMKCPQCTCLQSLDTQSERSCGCDKK
CERNKSAMLKALDCMDSLEALYNSINVIPTPDQHKKLELKICKGRQLLGH
CNIALLHAYEVGMDGCLDYSDWKGALEYGKKLEKLYLVYLTKNHPSIGLH
YFKQGKLELQMENLREGISYFEKAMKILCISHGEKHELVVLLQETLQSAL
IEINCEQFGHVENMMKMEEQ
Run BLAST on NCBI

transcript from alignment at sc0000444:123460..126991+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023156 ID=TCONS_00023156|Name=TCONS_00023156|organism=Clytia hemisphaerica|type=transcript|length=3532bp|location=Sequence derived from alignment at sc0000444:123460..126991+ (Clytia hemisphaerica)
GTGAACATGAAAGAATCTTGtgcaaaaataataatagtATTGTCTGGAAA
ACGTAAATCTGGGAAAGATTATGTTGCAGATAACATAGTGAAGAAGATCT
CCCCAGAGAGATGCCATATCATGAGAGTAGCTTTACCtatcaaaaaacat
ttctgTGAGAAATACAACATGGACTATAAAGAAATGATGACCTCATCAGA
ATATAAAGAATTAAGACGAGCGGAGATGATCCAATGGGGTGAAGAACAAA
GGAATAAAGATACAGGAGTATTTTGCCGTACTGAGAAAAATTCAGCAATT
GATTCTGGGAAACCAGTTTGGATTCTAAGTGATGCACGCAGACCTAGTGA
TGTTAATTATTTTAGGGAATATGCCAGAAGCCTTGGTGTAACATTTTATG
CTATTCGTGTATCTGCAGATATAGAAACAAGAGAGGAGCGTGGTTGGAAG
TTTACAAAGAATGTTGATGATGTAGATTCTGAATGTGCCCTTGATTCTTA
TGACAAATGGGACTTTTGCtttgaaaattcacaaaatgatAGTGTTATTG
AAAAGGTTGAGGAACTCACTACCAATATGAAACAAATTCTCTCTAACTGA
GACCACACTTTCATACctttatatattttgatatatACATCACTGTTTTA
GTTTCTCGCTCCTTTCccaatttgatggagatttaatTCAATATAATGCA
GTCCaattaattttgataaattgcACAAGACTGCTCAAAATATTTATATC
ATAATATTATACTGTAGcatatttttaatgattttgtatctattttaaaa
cacttaaataatataaagataatagattttgcttgattttaattttctta
taacACACAATTTATAATATCTAATCTCTATTTTTAGGATATAAAGCAgc
aaaatggtaaaatttgaaaattttgaaatctttgagAGCGAATCGAAAGG
AAAGGGTCTACGTGCAATAACACATATTGATGCTGGAGAGGAGATTTTAC
ATGAAGAACCTCTAGTGTACACTTTGATGAATGCGAAATGTAGAGGAGGA
AGATGTGATTATTGTTTTAGTGAAGATAGGAAATTATTCAAATGCTCAAA
ATGTAAATTTGTTTCATACTGTGGGCGTGAATGTCAATCTGGGGATTGGA
AAATCCATAAATATGAATGTAAATGCTTGGTCAAGGTTGCACCAAAACAA
CCACCTGATATCTGTCGTTTAGTATCACATCTATTGTTCAAATATTATAC
CTCAAACAAAAAGACTTCTGCCAATCCTTCAGAGATTGAAGCCTTAACAG
ACAATCGTGGGAGAGTAACTAATTCACGTAAAGAAGCATTTTTCACCTTT
AGTGGTGTTTTGTTTGATTACCTCAAAGGATGCACTTTCACTGATGATGC
TGATATCTATGGATTGCTTTGTAGAATCTCAAGCAACAGTTTCACAATCA
CTAATTCAGAGCTAAACTCCCTAGGTttgttttaatcatttttttctatg
aaaaattttcaGCACCCCAAGCTTGTAGCTAAGACCATATTTTTACAGTT
CATATGTTCTAAAAAATTCTCTTATAACTTGCACTGGGCTTAAGGCACAA
AACGGAAAGTTTATATGCTGAGTTATATAatgttttcaatttgttttatt
attttctttcttaGGGACAGGATTATACAAGACATCTTCTTTTCTTAACC
ATTCATGTGATCCCAACGTTGTTGCAATCTTCAATGGCACCAAAATACAC
ATCCGAACGATCAAGGAAGTGCAAGAAGGAGAAGAGCTTTTTCTAAGCTA
CATCAACCTCTTAGCCACCACAAAACATCGACAGTCTGAACTAATGGATG
GGTACATGTTTACATGTAGTTGCTCCAAATGTAATGGTAATGGGTTTTCA
GACTTGATGATGTTGAGTATGAAATGCCCACAATGCACCTGTCTGCAATC
GCTTGATACACAATCAGGTAATGAATCTTTACGTTCTTTCTAATTTCATG
AAGTAGTTCCAAAACTAAGGGATATtgttcaatttgtttttttttaaata
gtcaGTTTCCGTTGGCAATATTTTTCAAGCTTCATGAAGGCTTTCGACTT
TGGTGCCAAtcatcatttttcaattttcgtcaTAGAAAGATCGTGTGGAT
GTGACAAGAAGTGTGAAAGAAACAAATCAGCCATGTTGAAAGCTCTCGAT
TGTATGGATTCTTTAGAAGCACTTTATAACTCAATTAACGTCATCCCTAC
TCCAGACCAACACAAAAAGTTGGAACTGAAAATCTGTAAAGGAAGACAGC
TCTTGGGACATTGTAATATTGCATTACTACATGCTTATGAAGTGGGTATG
GACGGTTGTCTTGATTATTCGGACTGGAAAGGGGCTTTGGAGTATGGCAA
AAAGTTGGAGAAACTTTATCTCGTTTATCTGACGAAGAACCACCCGAGTA
TCGGTCTTCATTATTTTAAACAAGGTATTATATTGAGCTTTCCTATTTTT
ATACAGTGTCTGGGAGATTACCAAAGTAGAGTCAATAATCACCTTTATTC
gaatttctattattcgaatttttctagtgtaattcgaactaatatATTGA
TTAATGATTAAGTcccatgaagatcgaattagagagaaagtCAACTGTAG
TCTGTTTTCTATGTTAAGTAATATGAAAAGTGATGTAACTTTGACACGTG
CCTTTCTTTTCATTAACTCGTACAGATAAGCGTTTGTTTTACTACAAATT
ATTTAATCTTTATTCTTAGGAAAACTTGAGCTTCAGATGGAAAATCTTCG
TGAAGGGATCAGTTATTTTGAAAAAGCCATGAAGATACTTTGTATTTCAC
ACGGAGAGAAACATGAGCTTGTGGTGTTATTACAAGAAACTTTACAATCA
GCTTTAATTGAGATAAACTGTGAACAGTTTGGTCACGTGGAAAATATGAT
GAAGATGGAAGAACAATAATTTGCTGCATGAAATTCTGTTCCGTTTAATG
ATCTTGTGGAATTTTTATTATTGATTGCTGCATGTTATGGTTCAAGATTA
TCACAGGAAAGATGGTAAAAAGCAGCGAGTTCCTTTATTCTTTTGTTCAT
GTTTGGGAACTGGTTTCTTTTAGTTAAAAAAACAACCAGTGCTAGGAAGT
GGCTATGGTTCCATCCTCACACTCTGGCCTGCACTTTGAACATTTGCTGC
TCGTCATCTCTTTGTATTGGGAACCAAAGACAGTCAACAGTcaacctttt
ttttgaaatctttttatgACACACCTTACCTCATCATGCCGATTTATCAG
ATTTAGTTTTCATCATCATGCGGGACAAACAGTTAGCGGCGGACATGTGT
ACAGCCCTGCTGAAAATGCAAATGTTAAGCAAGCACGGCTCTGACAGTGA
TGATTGTCCGATACCAACTGCTTGATGCCTCTTTTGTTTGCATtattact
tttgtttttattttatactcTTTGTACTTATGTTGATATTTTACTGATCG
AGCAAAATAAAGAACTGTTACATACTTCTATG

Coding sequence (CDS) from alignment at sc0000444:123460..126991+

>TCONS_00023156 ID=TCONS_00023156|Name=TCONS_00023156|organism=Clytia hemisphaerica|type=CDS|length=5652bp|location=Sequence derived from alignment at sc0000444:123460..126991+ (Clytia hemisphaerica)
atggtaaaatttgaaaattttgaaatctttgagAGCGAATCGAAAGGAAA
GGGTCTACGTGCAATAACACATATTGATGCTGGAGAGGAGATTTTACATG
AAGAACCTCTAGTGTACACTTTGATGAATGCGAAATGTAGAGGAGGAAGA
TGTGATTATTGTTTTAGTGAAGATAGGAAATTATTCAAATGCTCAAAATG
TAAATTTGTTTCATACTGTGGGCGTGAATGTCAATCTGGGGATTGGAAAA
TCCATAAATATGAATGTAAATGCTTGGTCAAGGTTGCACCAAAACAACCA
CCTGATATCTGTCGTTTAGTATCACATCTATTGTTCAAATATTATACCTC
AAACAAAAAGACTTCTGCCAATCCTTCAGAGATTGAAGCCTTAACAGACA
ATCGTGGGAGAGTAACTAATTCACGTAAAGAAGCATTTTTCACCTTTAGT
GGTGTTTTGTTTGATTACCTCAAAGGATGCACTTTCACTGATGATGCTGA
TATCTATGGATTGCTTTGTAGAATCTCAAGCAACAGTTTCACAATCACTA
ATTCAGAGCTAAACTCCCTAGGGACAGGATTATACAAGACATCTTCTTTT
CTTAACCATTCATGTGATCCCAACGTTGTTGCAATCTTCAATGGCACCAA
AATACACATCCGAACGATCAAGGAAGTGCAAGAAGGAGAAGAGCTTTTTC
TAAGCTACATCAACCTCTTAGCCACCACAAAACATCGACAGTCTGAACTA
ATGGATGGGTACATGTTTACATGTAGTTGCTCCAAATGTAATGGTAATGG
GTTTTCAGACTTGATGATGTTGAGTATGAAATGCCCACAATGCACCTGTC
TGCAATCGCTTGATACACAATCAGAAAGATCGTGTGGATGTGACAAGAAG
TGTGAAAGAAACAAATCAGCCATGTTGAAAGCTCTCGATTGTATGGATTC
TTTAGAAGCACTTTATAACTCAATTAACGTCATCCCTACTCCAGACCAAC
ACAAAAAGTTGGAACTGAAAATCTGTAAAGGAAGACAGCTCTTGGGACAT
TGTAATATTGCATTACTACATGCTTATGAAGTGGGTATGGACGGTTGTCT
TGATTATTCGGACTGGAAAGGGGCTTTGGAGTATGGCAAAAAGTTGGAGA
AACTTTATCTCGTTTATCTGACGAAGAACCACCCGAGTATCGGTCTTCAT
TATTTTAAACAAGGAAAACTTGAGCTTCAGATGGAAAATCTTCGTGAAGG
GATCAGTTATTTTGAAAAAGCCATGAAGATACTTTGTATTTCACACGGAG
AGAAACATGAGCTTGTGGTGTTATTACAAGAAACTTTACAATCAGCTTTA
ATTGAGATAAACTGTGAACAGTTTGGTCACGTGGAAAATATGATGAAGAT
GGAAGAACAATAAatggtaaaatttgaaaattttgaaatctttgagAGCG
AATCGAAAGGAAAGGGTCTACGTGCAATAACACATATTGATGCTGGAGAG
GAGATTTTACATGAAGAACCTCTAGTGTACACTTTGATGAATGCGAAATG
TAGAGGAGGAAGATGTGATTATTGTTTTAGTGAAGATAGGAAATTATTCA
AATGCTCAAAATGTAAATTTGTTTCATACTGTGGGCGTGAATGTCAATCT
GGGGATTGGAAAATCCATAAATATGAATGTAAATGCTTGGTCAAGGTTGC
ACCAAAACAACCACCTGATATCTGTCGTTTAGTATCACATCTATTGTTCA
AATATTATACCTCAAACAAAAAGACTTCTGCCAATCCTTCAGAGATTGAA
GCCTTAACAGACAATCGTGGGAGAGTAACTAATTCACGTAAAGAAGCATT
TTTCACCTTTAGTGGTGTTTTGTTTGATTACCTCAAAGGATGCACTTTCA
CTGATGATGCTGATATCTATGGATTGCTTTGTAGAATCTCAAGCAACAGT
TTCACAATCACTAATTCAGAGCTAAACTCCCTAGGGACAGGATTATACAA
GACATCTTCTTTTCTTAACCATTCATGTGATCCCAACGTTGTTGCAATCT
TCAATGGCACCAAAATACACATCCGAACGATCAAGGAAGTGCAAGAAGGA
GAAGAGCTTTTTCTAAGCTACATCAACCTCTTAGCCACCACAAAACATCG
ACAGTCTGAACTAATGGATGGGTACATGTTTACATGTAGTTGCTCCAAAT
GTAATGGTAATGGGTTTTCAGACTTGATGATGTTGAGTATGAAATGCCCA
CAATGCACCTGTCTGCAATCGCTTGATACACAATCAGAAAGATCGTGTGG
ATGTGACAAGAAGTGTGAAAGAAACAAATCAGCCATGTTGAAAGCTCTCG
ATTGTATGGATTCTTTAGAAGCACTTTATAACTCAATTAACGTCATCCCT
ACTCCAGACCAACACAAAAAGTTGGAACTGAAAATCTGTAAAGGAAGACA
GCTCTTGGGACATTGTAATATTGCATTACTACATGCTTATGAAGTGGGTA
TGGACGGTTGTCTTGATTATTCGGACTGGAAAGGGGCTTTGGAGTATGGC
AAAAAGTTGGAGAAACTTTATCTCGTTTATCTGACGAAGAACCACCCGAG
TATCGGTCTTCATTATTTTAAACAAGGAAAACTTGAGCTTCAGATGGAAA
ATCTTCGTGAAGGGATCAGTTATTTTGAAAAAGCCATGAAGATACTTTGT
ATTTCACACGGAGAGAAACATGAGCTTGTGGTGTTATTACAAGAAACTTT
ACAATCAGCTTTAATTGAGATAAACTGTGAACAGTTTGGTCACGTGGAAA
ATATGATGAAGATGGAAGAACAATAAatggtaaaatttgaaaattttgaa
atctttgagAGCGAATCGAAAGGAAAGGGTCTACGTGCAATAACACATAT
TGATGCTGGAGAGGAGATTTTACATGAAGAACCTCTAGTGTACACTTTGA
TGAATGCGAAATGTAGAGGAGGAAGATGTGATTATTGTTTTAGTGAAGAT
AGGAAATTATTCAAATGCTCAAAATGTAAATTTGTTTCATACTGTGGGCG
TGAATGTCAATCTGGGGATTGGAAAATCCATAAATATGAATGTAAATGCT
TGGTCAAGGTTGCACCAAAACAACCACCTGATATCTGTCGTTTAGTATCA
CATCTATTGTTCAAATATTATACCTCAAACAAAAAGACTTCTGCCAATCC
TTCAGAGATTGAAGCCTTAACAGACAATCGTGGGAGAGTAACTAATTCAC
GTAAAGAAGCATTTTTCACCTTTAGTGGTGTTTTGTTTGATTACCTCAAA
GGATGCACTTTCACTGATGATGCTGATATCTATGGATTGCTTTGTAGAAT
CTCAAGCAACAGTTTCACAATCACTAATTCAGAGCTAAACTCCCTAGGGA
CAGGATTATACAAGACATCTTCTTTTCTTAACCATTCATGTGATCCCAAC
GTTGTTGCAATCTTCAATGGCACCAAAATACACATCCGAACGATCAAGGA
AGTGCAAGAAGGAGAAGAGCTTTTTCTAAGCTACATCAACCTCTTAGCCA
CCACAAAACATCGACAGTCTGAACTAATGGATGGGTACATGTTTACATGT
AGTTGCTCCAAATGTAATGGTAATGGGTTTTCAGACTTGATGATGTTGAG
TATGAAATGCCCACAATGCACCTGTCTGCAATCGCTTGATACACAATCAG
AAAGATCGTGTGGATGTGACAAGAAGTGTGAAAGAAACAAATCAGCCATG
TTGAAAGCTCTCGATTGTATGGATTCTTTAGAAGCACTTTATAACTCAAT
TAACGTCATCCCTACTCCAGACCAACACAAAAAGTTGGAACTGAAAATCT
GTAAAGGAAGACAGCTCTTGGGACATTGTAATATTGCATTACTACATGCT
TATGAAGTGGGTATGGACGGTTGTCTTGATTATTCGGACTGGAAAGGGGC
TTTGGAGTATGGCAAAAAGTTGGAGAAACTTTATCTCGTTTATCTGACGA
AGAACCACCCGAGTATCGGTCTTCATTATTTTAAACAAGGAAAACTTGAG
CTTCAGATGGAAAATCTTCGTGAAGGGATCAGTTATTTTGAAAAAGCCAT
GAAGATACTTTGTATTTCACACGGAGAGAAACATGAGCTTGTGGTGTTAT
TACAAGAAACTTTACAATCAGCTTTAATTGAGATAAACTGTGAACAGTTT
GGTCACGTGGAAAATATGATGAAGATGGAAGAACAATAAatggtaaaatt
tgaaaattttgaaatctttgagAGCGAATCGAAAGGAAAGGGTCTACGTG
CAATAACACATATTGATGCTGGAGAGGAGATTTTACATGAAGAACCTCTA
GTGTACACTTTGATGAATGCGAAATGTAGAGGAGGAAGATGTGATTATTG
TTTTAGTGAAGATAGGAAATTATTCAAATGCTCAAAATGTAAATTTGTTT
CATACTGTGGGCGTGAATGTCAATCTGGGGATTGGAAAATCCATAAATAT
GAATGTAAATGCTTGGTCAAGGTTGCACCAAAACAACCACCTGATATCTG
TCGTTTAGTATCACATCTATTGTTCAAATATTATACCTCAAACAAAAAGA
CTTCTGCCAATCCTTCAGAGATTGAAGCCTTAACAGACAATCGTGGGAGA
GTAACTAATTCACGTAAAGAAGCATTTTTCACCTTTAGTGGTGTTTTGTT
TGATTACCTCAAAGGATGCACTTTCACTGATGATGCTGATATCTATGGAT
TGCTTTGTAGAATCTCAAGCAACAGTTTCACAATCACTAATTCAGAGCTA
AACTCCCTAGGGACAGGATTATACAAGACATCTTCTTTTCTTAACCATTC
ATGTGATCCCAACGTTGTTGCAATCTTCAATGGCACCAAAATACACATCC
GAACGATCAAGGAAGTGCAAGAAGGAGAAGAGCTTTTTCTAAGCTACATC
AACCTCTTAGCCACCACAAAACATCGACAGTCTGAACTAATGGATGGGTA
CATGTTTACATGTAGTTGCTCCAAATGTAATGGTAATGGGTTTTCAGACT
TGATGATGTTGAGTATGAAATGCCCACAATGCACCTGTCTGCAATCGCTT
GATACACAATCAGAAAGATCGTGTGGATGTGACAAGAAGTGTGAAAGAAA
CAAATCAGCCATGTTGAAAGCTCTCGATTGTATGGATTCTTTAGAAGCAC
TTTATAACTCAATTAACGTCATCCCTACTCCAGACCAACACAAAAAGTTG
GAACTGAAAATCTGTAAAGGAAGACAGCTCTTGGGACATTGTAATATTGC
ATTACTACATGCTTATGAAGTGGGTATGGACGGTTGTCTTGATTATTCGG
ACTGGAAAGGGGCTTTGGAGTATGGCAAAAAGTTGGAGAAACTTTATCTC
GTTTATCTGACGAAGAACCACCCGAGTATCGGTCTTCATTATTTTAAACA
AGGAAAACTTGAGCTTCAGATGGAAAATCTTCGTGAAGGGATCAGTTATT
TTGAAAAAGCCATGAAGATACTTTGTATTTCACACGGAGAGAAACATGAG
CTTGTGGTGTTATTACAAGAAACTTTACAATCAGCTTTAATTGAGATAAA
CTGTGAACAGTTTGGTCACGTGGAAAATATGATGAAGATGGAAGAACAAT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013016XLOC_013016Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023156-exon-sc0000444-1491911889:123460..124014TCONS_00023156-exon-sc0000444-1491911889:123460..124014Clytia hemisphaericaexon
TCONS_00023156-exon-sc0000444-1510915933:123460..124014TCONS_00023156-exon-sc0000444-1510915933:123460..124014Clytia hemisphaericaexon
TCONS_00023156-exon-sc0000444-1575043694:123460..124014TCONS_00023156-exon-sc0000444-1575043694:123460..124014Clytia hemisphaericaexon
TCONS_00023156-exon-sc0000444-1491911889:124347..124933TCONS_00023156-exon-sc0000444-1491911889:124347..124933Clytia hemisphaericaexon
TCONS_00023156-exon-sc0000444-1510915933:124347..124933TCONS_00023156-exon-sc0000444-1510915933:124347..124933Clytia hemisphaericaexon
TCONS_00023156-exon-sc0000444-1575043694:124347..124933TCONS_00023156-exon-sc0000444-1575043694:124347..124933Clytia hemisphaericaexon
TCONS_00023156-exon-sc0000444-1491911889:125124..125426TCONS_00023156-exon-sc0000444-1491911889:125124..125426Clytia hemisphaericaexon
TCONS_00023156-exon-sc0000444-1510915933:125124..125426TCONS_00023156-exon-sc0000444-1510915933:125124..125426Clytia hemisphaericaexon
TCONS_00023156-exon-sc0000444-1575043694:125124..125426TCONS_00023156-exon-sc0000444-1575043694:125124..125426Clytia hemisphaericaexon
TCONS_00023156-exon-sc0000444-1491911889:125595..125933TCONS_00023156-exon-sc0000444-1491911889:125595..125933Clytia hemisphaericaexon
TCONS_00023156-exon-sc0000444-1510915933:125595..125933TCONS_00023156-exon-sc0000444-1510915933:125595..125933Clytia hemisphaericaexon
TCONS_00023156-exon-sc0000444-1575043694:125595..125933TCONS_00023156-exon-sc0000444-1575043694:125595..125933Clytia hemisphaericaexon
TCONS_00023156-exon-sc0000444-1491911889:126229..126991TCONS_00023156-exon-sc0000444-1491911889:126229..126991Clytia hemisphaericaexon
TCONS_00023156-exon-sc0000444-1510915933:126229..126991TCONS_00023156-exon-sc0000444-1510915933:126229..126991Clytia hemisphaericaexon
TCONS_00023156-exon-sc0000444-1575043694:126229..126991TCONS_00023156-exon-sc0000444-1575043694:126229..126991Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023156-proteinTCONS_00023156-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000444supercontigsc0000444:123460..126991 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.963	37.8809	127.005	142.449	4.29191	4.80378	3.61122	6.36693	4.94152	4.01777	7.34887	2.97417	6.20575	6.8462	6.84728	7.99752	4.75062	6.51422	5.44053	3.30583	2.1671	2.68887	20.0894	17.6275	8.12254	9.12636	0.924527	3.16739	10.1848	11.8369
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001214SET_dom
IPR002893Znf_MYND
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00023156 vs. Swiss-Prot (Human)
Match: SMYD3 (Histone-lysine N-methyltransferase SMYD3 OS=Homo sapiens GN=SMYD3 PE=1 SV=4)

HSP 1 Score: 199.904 bits (507), Expect = 5.982e-56
Identity = 129/437 (29.52%), Postives = 208/437 (47.60%), Query Frame = 2 
Query:  593 EIFESESKGKGLRAITHIDAGEEILHEEPLVYTLMNAKCRGGR---CDYCFSEDRKLFKCSKCKFVSYCGRECQSGDWKIHKYECKCLVKVAPKQPPDICRLVSHLLFKYYTSNKKTSANPSEIEALTDNRGRVTNSRKEAF----FTFSGVLFDYLKGCTFTDDA-DIYGLLCRISSNSFTITNSELNSLGTGLYKTSSFLNHSCDPNVVAIFNGTKIHIRTIKEVQEGEELFLSYINLLATTKHRQSELMDGYMFTCSCSKCNGNGFSDLMMLSMKCPQCTCLQSLDTQSERSCGCDKKCERNKSAMLKALDCMDSLEALYNSINVIPTPDQHKKLELKICKGRQLLGHCNIALLHAYEVGMDGCLDYSDWXXXXXXXXXXXXXXXXXXXXNHPSIGLHYFKQGKLELQMENLREGISYFEKAMKILCISHGEKH 1879
            E F +  +G GLRA+T +  GE +   +PL YT+    C+G R   CD C     KL +CS+C+   YC  +CQ   W  HK ECKCL    P+ PPD  RL+  ++FK        S        L  N  ++T  +KE       TF   + + ++  +    A D++    ++  NSFTI N+E+  +G GLY + S LNHSCDPN   +FNG  + +R +++++ GEEL + Y+++L T++ R+ +L D Y F C C +C                     Q+ D  ++   G D++  +     LK ++    L+A +    V+         +  I    + L   NI  L   +  MD C++    + AL YG +  + Y ++   +HP  G+   K GKL+L      + +     A  I+ ++HG +H
Sbjct:    7 EKFATAKRGNGLRAVTPLRPGELLFRSDPLAYTV----CKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTEDKKEGLRQLVMTFQHFMREEIQDASQLPPAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRC---------------------QTQDKDADMLTG-DEQVWKEVQESLKKIE---ELKAHWKWEQVLAM------CQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 408
The following BLAST results are available for this feature:
BLAST of TCONS_00023156 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SMYD35.982e-5629.52Histone-lysine N-methyltransferase SMYD3 OS=Homo s... [more]
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