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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023143 ID=TCONS_00023143|Name=TCONS_00023143|organism=Clytia hemisphaerica|type=transcript|length=1113bp
ACGCGcgtgatttttttctctttgtagGCACGTCGGACGCTTATCTTCGT
AGCTTATCTTTGAGAGTCTAAGATGCGTGATTTAGAGGAGAGGGGGTGAT
ACAGATGATAAAAACAATAGTTTGGTGGACATGTGGAGGTGCTTTCGCTG
CCCTATACGCAAATAAAGTACAAGGCTTACATTTCCTTTACAaaCCAAGA
AGAATTGTATTAGTGacacttcttggattggctgtTGGATACAAAGTTCA
TGAATTTGAAAGAGATTTACCACAACTAATGGTAGAGGCTAGACGTGAAC
ATGTTTTTGCTCCAAAATCTCGTGAAATGTTACTGACATACCAAGCTATG
GTGCGAAGAAATCAAGAGCAAGTGACTGAAGGAGatttcGAAGTTACaga
agaagaggaagaagaagacGAAGATGAAGAGTAGACAAATAACAAACAAT
TTTTTCGAATGTGTATTATATTTTTATCCCACTAGATATCCTGTTTCtaa
acaatatttttaaaattaatccacttctGGTGTCTTTTGTTCATTTACTG
TACTCTCGCATGGTAAGGGGCTATTCTTTAGGGCTTATGACAACAATTAC
CTTTGTGATTTTCTATGGCCTATTACCTAAAGAATTACCAGTTTCTTTTT
GCTTGCTTTCGTAGCTCTATGGCTAAATTTATcgtattttatgaaatttg
tcgttctttttgtctatttttattaaaTGTTGGATTCTTTAGATTAACCT
CCTCCACATATCATATCTATAACTCAATGCAACTGATTAAATAAATATTC
TAGAGGCAGTGCTGCACTAATAATAGAAGGAAACAAATTAATCTGAACTT
TTGACTCTCAAACTGCTCAAAAATTTCGAGGAAACTTTTAGTCTCTCCAC
ACTAAATTGGAGGAAAAATAATCGAGCAGACAACAAGTTTTCGCCATGTC
AAATATACATTCCCAATGAGCTTGTCAACCGAATTAATTTATACTCATCA
TATTTGAAATCACAATTCAAAACAACTAAATATCTAACGTAGATCATGAG
AAAtttataaaatcatttttaaaaaagtgaCTCAATTTTGAGTCAACAAA
AATTGTAACTGAc Run BLAST on NCBI transcript from alignment at sc0000444:14753..21828+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023143 ID=TCONS_00023143|Name=TCONS_00023143|organism=Clytia hemisphaerica|type=transcript|length=7076bp|location=Sequence derived from alignment at sc0000444:14753..21828+ (Clytia hemisphaerica)
ACGCGcgtgatttttttctctttgtagGCACGTCGGACGCTTATCTTCGT
AGCTTATCTTTGAGAGTCTAAGATGCGTGATTTAGAGGAGAGGGGGTGAT
ACAGGTAAATACAATATGGCGTTTTTGAAGCGGACGACAAACATTGACAT
TATTTTTCTGCTCTTAATTCTACCAGCTTTTAATATATATTTCTGCTATC
TATCGAAATAGAAAGTGTTTTGATTTCTCCAGGAGCATAGAAAAGTCATA
CCATGCCGACACACAAAAGTAGGATGGTGTGGACAGggcaaaattttccc
ctcaatttttgaaaaccaaactacctaattttattatttgaggCTTAGCT
tataggcggcaatcacaaatatcttcattttgccgtctcgttgggtctaa
aaagtgagtcggtcggttggtcggtTGGTCATAgaaatttttgggttttc
ttcTTCTCGTCGGAcctccatcatccatttttgccagCCAGCCAGAACAA
TCGCGTGTTATGGGTGGTTtcaaattgggctcttccagaaaaaaattgat
ataggGGGTGGATGACgggaattttcagataaaaaaagcactcggaaatc
cagtcaatttttcaaagtgctttggAAATTctgctcaattttttatttga
acccttggaaattccacataatttgtcaaagttttgaaaaaggtattggg
ggccgtcgacattcgactttcaaattttttaactgcatttggccgttaag
ggggggagggggtcgacCATGTGCCGTTATAAGGGAAGGTCGAAAATATC
TTTAGGGGTCAACTCACCACATTATCAATTCTTTTCACcagaaaatatcg
atttttgagacatttaatttttgacgtcaaatacaatATGTACGGCCACG
CTCTTGcgaatgaatgaaaaagaatggcaacaatcgatgaaaaacccact
gaaaatgctgaaaaatatggATCCTGTACCGCCAATAAATGCTTCACGAA
TGAAATAATAAAGGATAATGACATATTACAATGTAGGAAATGCCAGAGAT
TCGTTCATTATGCTTGTTTGGAGCTTCCCGCATACCAAATTCAGCTTTGT
CTGCAATACAAAAGCCGACGCttcgaatgtaaaaaatgtGTTACAGTCAC
GCCAATACTTTTGGAAAANNNNNNNNNNNNNNNNNTCGTTCATTATGCTT
GTTCGGAGCTTCCCGCATACCAAATTCAGCTTTGTCTGCAATACAAAAGC
CGACGCttcgaatgtaaaaaatgtGTTACAGTCACACCAatacttttgga
aaaaatcaaaacaagtaagCAAAGAGTCAGAAGTAACCAAATAACGCAAA
CAATAACGGAAGCAGAATGTCGAGATGGAGGTCAGCAAATATTTGAATCT
GTTTTCAACACTAGATTGCATAATCTAGAGAAGAAAATGGAGGAACTTAT
AGCTATGAACAAAGAAGACGTCGCTAAAGAACCAAAACGGGCAACATATG
CAGATATCACAAAGGAAGAGATGAAGAAACAGGAGGTTATCAtcaagaaa
tttatcaaaaatgaaaaagaagaaagagaagaCGATCGCTGGAAGATCTT
AACTAGATGTAACATCATTGTCCATCATTTAGGTGAAAATAAAGATGAGA
ACAAAGAGGAACAGCGGGCCGGTGACAAAGATTACGTGGAGGAAGTTGTA
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCTCGAAAGGATGATATGTTCAAGA
CGAAAAGATGGCGGCCATTGAAAGTAACGTTGGCcaatgaagaagacaag
aaaagAATTATGGCCTCAGTCCATAAACTAAACAAAGATAATTTCAGTGT
AACAGATGACTTCTCCAAGAAAGAACTTGAAACCATTAAAGAATGAGAAG
GATGAATGCTGTgtatggaaagtgagaggtagcCCTCGGGCTAAGCTCTA
CTttaagaaaatatgtaaaaagaccGTTATCGATgaactgtaaatttgaa
ttagattgtttcatagaggtcaatagacctgcgaaatatactcCTATACT
TACTTCGTGATACTTCGTTATTGATTATGTACTTTATGGTACTCATCCAA
TTCGTTGAATCCGATGATTGACCATTACTGTTGTACTGTTAGANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCATTACTGTTGTAC
TGTTAGAGTCAGCTCTCCTGAAGTTGAAATAATTAGGAAGCAGCGGTTCG
TCTGGCAGTGTACTGAGGAATTGGTCAAGATGCTGTTTAAAGGTTTGTTT
GGTACAGTTTGTTAGGTTTCTAAGGGATTTTGGCAGAGCATTGAAGAGCC
TTGGTCCTTCTTGTGAGAGACAACCTCTccagatatttttatgtttgaca
tttACAGCTTTCAAATTGCATTTTCTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTTTTGGATAGCGTTGTGTTGACAGAGACTCTCTGTGTTCTCC
CTGTAAGAAATGACTTTATCCAGGATAGAAGTTTTCCACAAATGCCATTT
CTTTCAAGtttctataaataaataaataaataattaactcgtaagattaa
ggtgcaccataaattgacgagttaattaactcgtaggattatggtgcacc
ataaattgacgagttaaattatctacttgtgacgtcataatttcccattg
atgacgtcacatttaacgtaactcgtgttttttgtaactcgtgtttttta
actcgtgttttttaacttgTGTTTTTTAACTTGTGTTTTCTGAGCGTCAT
TATGAACACTGTATGTAattataaacaaagtcaaaatgcagTGAATGCGC
TAGCTAGAAATTGCTCGCAAAAAAACGGCAATAATAAAAGTTATCATCAT
agacagaaaaagtccgacaaatttaccgactcaccgactcaattctaatc
aattttcgagagtccgTCGGGCGACGCGACATGaatatatttgtgattgc
cTCCTTAGGCCCTTACTTAGGACTATACAGACAAGTATTATATATAGTAA
TACATGATATTATTATAACATCAACACTCGATTATGATACATGCAGATGA
CCTTTCAAAAAAGACTGTGTCACTGCcagttttcagagcatgtcatCGTT
GCCCCCAAGGAAAATTTCCAACATAAAACTCTGCCCATAAAATCCGTCTC
CCACCACAAAAAAAGCCAGAAAGACAGGTAAATATAGCcatttttcaatg
attttgtcCCTGAACTGtagatattatcaaaattttgattgcGCCTGCCC
CTGCCTGCCCTTAAAAAGTGATGTGAGCACTCTTTGCCCTTGAGATTTTG
ATGATTTCTGTCATACTCTGAAAACTGGGGTCACTGCCACTGGGATTATA
AATAGTTGTTTTGCTTTGGCGAACTCAATGGTCTTTTGAATAACAATTAC
CGTCAGTCAggcaggcacatcctggcaaatgaatggggtatttttcactt
gcgattggtggcaaatgcaaggggtcgaaaacaaaagtgatgtaatagca
ctgaataccccacgcaattgaaccgggttggaaatattttgcttcatttc
aaagaactgcatagatgaaattgtttttccattggtcaattttgtcttcg
aaaattgaagaaacttttaacgaaaaaataaagttcccagttttcttcct
tttttcccattttcagtttgaagatcatttttattcattttcacgctttt
agcctgagacgtcctatctcatttacactgggtgacgaataccccatgca
aatgctcaccccgttcatttgccaggatgtgcctgactgaccgtaacttg
gtctaatgtcgacacccttttttatcagctgaaatttatagaaaggctGA
AACGTGTGATAGACACCATCTAAAATTTGATGCCCTTCTGAACAGTGACT
GGGCACAAAGATTTGAGTTTAGCAAGTATTTTCAGCTTGTGGTAGCTTTG
AGATGTCAACTACAAAACTAAATTTCGGCACAaatgttttgtcttttttt
tttgtctaagttttaaaatttatgttatgaaacaatttttttttattgca
tAAATAGATGATAAAAACAATAGTTTGGTGGACATGTGGAGGTGCTTTCG
CTGCCCTATACGCAAATAAAGTACAAGGCTTACATTTCCTTTACAGTAAG
TTTCATCTTTGATATTTAAGTTTGTTTGTCTagtttagaaaaaagttgct
gCTTTAATAAACAGTAaatgtaatgttgtttttaCATGTCATATTGAGGC
TTTCACATCAATCATTAGTAGAGGACATCTTCTGCTAAACTATTTGaatt
cttatacaaaaaaattcacttcCGATCGCAAACACCTGAAACACGTTGTC
GAATTTGctaatttctacaaaaagttatGACGAAACGCCTGTAAGGCTAA
CATATTCTCCCTTGTATATACTCTTCTTCCTATaaaacaattatttttat
tatagaaCCAAGAAGAATTGTATTAGTGacacttcttggattggctgtTG
GATACAAAGTTCATGAATTTGAAAGAGATTTACCACAACTAATGGTAGAG
GCTAGACGTGAACATGTTTTTGCTCCAAAATCTCGTGAAATGTTACTGAC
ATACCAAGCTATGGTGCGAAGAAATCAAGAGCAAGTGACTGAAGGAGGTA
CCTGCATTTCCTCATACTTTTATCTCGttgaatttcgaattttggggTAT
TGTTAATCGGTTTTTAAGTGTATATACCATACTTGTTCCTTcacaagcag
aaactttcataaaaatacactttttgtaTACAGCTTTTTGGAcccacccc
ggtggaggtcctataaattaaccgttgttcgttcgttcgttcgttcgttc
gttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgtTCGTTCGT
CTGTTCTCCTGATATACCTTCAGGGAAATATTTTGCGAGTTATTCAAAAT
TGCAACTTTCCATACAGTAGGTGGCCTCTAAAAGTATATTATCGGGAAGC
TTGTCCTGCACAAGGCACTGTCATTTTGGACTGCACTCAAGACAAAGGAT
TCGCTAGCATACTTAAGGCGTACAAACTTGCGTGggcagaaattttcgcg
aggtcTAAAAATCgcacatttactttcgcgaattcgaTGAAAAACCAGTT
TCACGAGCATAAACATTCgcgaaatgaaaattttcacacgAAAAAATGGC
TCACAAgtacaaatacttcttggattggatTAAAGCTTTTGTCCTTTGAC
CAAGAGGCTTTAACTGGCTAAAAAAGTGTcataaatcttacatttttttt
attctggATTAGAAGTTTtgcagattttctattttgtcaaggatTTTTCA
CGAGCATAAAATTTGGTGAACGGCCCCTTCGAGAGTTTTCAAAGACTCac
aaaaagggctaaaattcgtgaaaatcgcgaaaaagtttctgctcatgaaa
gtttgtacgcctagtAAAGTATATCAGAAATTTAGGTAGTTCCAGTGTAA
GCTTGATAACCATATGCGATGATTCTATTTGATCNTAGGTAGTTCCAGTG
TAAGCTTGATAACCATATGCGAtgattctttttgattttttttacagatt
tcGAAGTTACagaagaagaggaagaagaagacGAAGATGAAGAGTAGACA
AATAACAAACAATTTTTTCGAATGTGTATTATATTTTTATCCCACTAGAT
ATCCTGTTTCtaaacaatatttttaaaattaatccacttctGGTGTCTTT
TGTTCATTTACTGTACTCTCGCATGGTAAGGGGCTATTCTTTAGGGCTTA
TGACAACAATTACCTTTGTGATTTTCTATGGCCTATTACCTAAAGAATTA
CCAGTTTCTTTTTGCTTGCTTTCGTAGCTCTATGGCTAAATTTATcgtat
tttatgaaatttgtcgttctttttgtctatttttattaaaTGTTGGATTC
TTTAGATTAACCTCCTCCACATATCATATCTATAACTCAATGCAACTGAT
TAAATAAATATTCTAGAGGCAGTGCTGCACTAATAATAGAAGGAAACAAA
TTAATCTGAACTTTTGACTCTCAAACTGCTCAAAAATTTCGAGGAAACTT
TTAGTCTCTCCACACTAAATTGGAGGAAAAATAATCGAGCAGACAACAAG
TTTTCGCCATGTCAAATATACATTCCCAATGAGCTTGTCAACCGAATTAA
TTTATACTCATCATATTTGAAATCACAATTCAAAACAACTAAATATCTAA
CGTAGATCATGAGAAAtttataaaatcatttttaaaaaagtgaCTCAATT
TTGAGTCAACAAAAATTGTAACTGAc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023143-exon-sc0000444-1491911889:14753..14856 | TCONS_00023143-exon-sc0000444-1491911889:14753..14856 | Clytia hemisphaerica | exon |
| TCONS_00023143-exon-sc0000444-1510915933:14753..14856 | TCONS_00023143-exon-sc0000444-1510915933:14753..14856 | Clytia hemisphaerica | exon |
| TCONS_00023143-exon-sc0000444-1575043694:14753..14856 | TCONS_00023143-exon-sc0000444-1575043694:14753..14856 | Clytia hemisphaerica | exon |
| TCONS_00023143-exon-sc0000444-1491911889:19560..19647 | TCONS_00023143-exon-sc0000444-1491911889:19560..19647 | Clytia hemisphaerica | exon |
| TCONS_00023143-exon-sc0000444-1510915933:19560..19647 | TCONS_00023143-exon-sc0000444-1510915933:19560..19647 | Clytia hemisphaerica | exon |
| TCONS_00023143-exon-sc0000444-1575043694:19560..19647 | TCONS_00023143-exon-sc0000444-1575043694:19560..19647 | Clytia hemisphaerica | exon |
| TCONS_00023143-exon-sc0000444-1491911889:19958..20149 | TCONS_00023143-exon-sc0000444-1491911889:19958..20149 | Clytia hemisphaerica | exon |
| TCONS_00023143-exon-sc0000444-1510915933:19958..20149 | TCONS_00023143-exon-sc0000444-1510915933:19958..20149 | Clytia hemisphaerica | exon |
| TCONS_00023143-exon-sc0000444-1575043694:19958..20149 | TCONS_00023143-exon-sc0000444-1575043694:19958..20149 | Clytia hemisphaerica | exon |
| TCONS_00023143-exon-sc0000444-1491911889:21100..21828 | TCONS_00023143-exon-sc0000444-1491911889:21100..21828 | Clytia hemisphaerica | exon |
| TCONS_00023143-exon-sc0000444-1510915933:21100..21828 | TCONS_00023143-exon-sc0000444-1510915933:21100..21828 | Clytia hemisphaerica | exon |
| TCONS_00023143-exon-sc0000444-1575043694:21100..21828 | TCONS_00023143-exon-sc0000444-1575043694:21100..21828 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000444 | supercontig | sc0000444:14753..21828 + |
Blast
The following BLAST results are available for this feature:
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