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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023138 ID=TCONS_00023138|Name=TCONS_00023138|organism=Clytia hemisphaerica|type=transcript|length=1580bp
ACGACTTAGAACTTACATTCGAAAGTATTTCAGACTTAGAAAAAGGACTA
AAAATCCTCAATGAAACACCTCCAAATAAACGCAAAGAAAACCAAAACGA
tgataataaatttcaaatctcaAAACCAAGATGAGTATCCTCAATCTATC
GTTACACTTAAAAATGATCAAGTCATCGAAAATGTTAAATTGTTCAGATA
TCTTGGAACCGACATACACTTCAATCAACCTTCAACAGGAGATACAGAGA
TTGACTTAAGAATAGCTGTTGCTCAAAACAAGTACAACCAAATGAGTAAA
AAACTGCACAATCGAAAGATATAGGGTATATCTCCTAAATACAATTGTGT
GCAGTCGGTTGACATATTCCTGTCAAACGTGGAATAtcactcaacaacaa
caacaacaacagcaaatCCGACCCACCTCCATTAATATGCTTCGTAAGAT
GGTGAGAGGTGGCTTTGAAAGAAGAATCGATGAAAACAATGAGCAAACTT
TCCACTTTCTCATGTCAAGTGAAGATGTTTTACGCATCTGTAAGACTGAG
GATATCCTTCAATAAGTCAAACAACAGTAACAAAACTATCTTGGCCATAT
TGCAAGACAAAAGAACACCAGCATCGTCAAAAGACTGCTTTTCAGCAACG
ACAACGCTAACAAGAAGAGAGGCCGACCAATCAAAACACTCGAAGATCAC
GTGCTTAATGATTGGTCGCACACGAGCTCTACAAGGAGGtctcgaagaaa
aaaaaagaaggttaTGGTTGGCCTTCGCCCTAACCACTCAATGTTGCCAC
CTGCGAACACGAGCTAAAGAATAAGTAAGAAGTAAGTTTTTAGGCAGTAA
AATAAGaaatctttcacaaaaaatcaCTCCCTCATGAAtgagaatttaat
ttaatcttgatggtcttcactttcaaaatgttcttCAAACTACTTGCATG
GTGAAATAGCGGTACAAGATTAAAGCTATTTACCACTTTGTTTACTTATA
CTACACTACTGTAAAAACAATACGCAGCTCCACTAAAAAAGCACACCGAT
TCATTCCCAATTCttattattcaacatttttgctGTCAAAACATTGCAAA
CTTTCGGGtagttaaagggacataacaatACTTgccaaatttgtaaaaaa
gctgTATGCTGCGgatgcaaaatcaaaacaaatgtcacatgtcaaaattg
aaaatcaaagcaaatatggctgattttgattgtttcaattgttttacacg
TTTGTTTTGGACaggtgattttaattgttctctttaatgacacgtggttc
gcgcaatgtttacattttactacttttatgtccctttaaaatctAAATCG
GATTTTTTGATTggtttctattgtaatactcccgaaacaatcccacaatg
catcgcttttttagaaaaatcaaaaactccgataagatctatatatttca
aaaacattcattCTGATATCAAATCGAacaattagtactagtaatcgtat
ggtttggagtgcaattaacgattaatcacgagtaacaaaggagaaaatag
taatttgcacgagtccgaaggacgagtgca Run BLAST on NCBI protein sequence of TCONS_00023138-protein >TCONS_00023138-protein ID=TCONS_00023138-protein|Name=TCONS_00023138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MKTMSKLSTFSCQVKMFYASVRLRISFNKSNNSNKTILAILQDKRTPASS
KDCFSATTTLTRREADQSKHSKITCLMIGRTRALQGGLEEKKRRLWLAFA
LTTQCCHLRTRAKE Run BLAST on NCBI transcript from alignment at sc0000443:230991..232570 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023138 ID=TCONS_00023138|Name=TCONS_00023138|organism=Clytia hemisphaerica|type=transcript|length=1580bp|location=Sequence derived from alignment at sc0000443:230991..232570 (Clytia hemisphaerica)
tgcactcgtccttcggactcgtgcaaattactattttctcctttgttact
cgtgattaatcgttaattgcactccaaaccatacgattactagtactaat
tgtTCGATTTGATATCAGaatgaatgtttttgaaatatatagatcttatc
ggagtttttgatttttctaaaaaagcgatgcattgtgggattgtttcggg
agtattacaatagaaaccAATCAAAAAATCCGATTTagattttaaaggga
cataaaagtagtaaaatgtaaacattgcgcgaaccacgtgtcattaaaga
gaacaattaaaatcacctGTCCAAAACAAAcgtgtaaaacaattgaaaca
atcaaaatcagccatatttgctttgattttcaattttgacatgtgacatt
tgttttgattttgcatcCGCAGCATAcagcttttttacaaatttggcAAG
TattgttatgtccctttaactaCCCGAAAGTTTGCAATGTTTTGACagca
aaaatgttgaataataaGAATTGGGAATGAATCGGTGTGCTTTTTTAGTG
GAGCTGCGTATTGTTTTTACAGTAGTGTAGTATAAGTAAACAAAGTGGTA
AATAGCTTTAATCTTGTACCGCTATTTCACCATGCAAGTAGTTTGaagaa
cattttgaaagtgaagaccatcaagattaaattaaattctcaTTCATGAG
GGAGtgattttttgtgaaagatttCTTATTTTACTGCCTAAAAACTTACT
TCTTACTTATTCTTTAGCTCGTGTTCGCAGGTGGCAACATTGAGTGGTTA
GGGCGAAGGCCAACCAtaaccttctttttttttcttcgagaCCTCCTTGT
AGAGCTCGTGTGCGACCAATCATTAAGCACGTGATCTTCGAGTGTTTTGA
TTGGTCGGCCTCTCTTCTTGTTAGCGTTGTCGTTGCTGAAAAGCAGTCTT
TTGACGATGCTGGTGTTCTTTTGTCTTGCAATATGGCCAAGATAGTTTTG
TTACTGTTGTTTGACTTATTGAAGGATATCCTCAGTCTTACAGATGCGTA
AAACATCTTCACTTGACATGAGAAAGTGGAAAGTTTGCTCATTGTTTTCA
TCGATTCTTCTTTCAAAGCCACCTCTCACCATCTTACGAAGCATATTAAT
GGAGGTGGGTCGGatttgctgttgttgttgttgttgttgagtgaTATTCC
ACGTTTGACAGGAATATGTCAACCGACTGCACACAATTGTATTTAGGAGA
TATACCCTATATCTTTCGATTGTGCAGTTTTTTACTCATTTGGTTGTACT
TGTTTTGAGCAACAGCTATTCTTAAGTCAATCTCTGTATCTCCTGTTGAA
GGTTGATTGAAGTGTATGTCGGTTCCAAGATATCTGAACAATTTAACATT
TTCGATGACTTGATCATTTTTAAGTGTAACGATAGATTGAGGATACTCAT
CTTGGTTTtgagatttgaaatttattatcaTCGTTTTGGTTTTCTTTGCG
TTTATTTGGAGGTGTTTCATTGAGGATTTTTAGTCCTTTTTCTAAGTCTG
AAATACTTTCGAATGTAAGTTCTAAGTCGT Coding sequence (CDS) from alignment at sc0000443:230991..232570 >TCONS_00023138 ID=TCONS_00023138|Name=TCONS_00023138|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0000443:230991..232570 (Clytia hemisphaerica)
TTATTCTTTAGCTCGTGTTCGCAGGTGGCAACATTGAGTGGTTAGGGCGA
AGGCCAACCAtaaccttctttttttttcttcgagaCCTCCTTGTAGAGCT
CGTGTGCGACCAATCATTAAGCACGTGATCTTCGAGTGTTTTGATTGGTC
GGCCTCTCTTCTTGTTAGCGTTGTCGTTGCTGAAAAGCAGTCTTTTGACG
ATGCTGGTGTTCTTTTGTCTTGCAATATGGCCAAGATAGTTTTGTTACTG
TTGTTTGACTTATTGAAGGATATCCTCAGTCTTACAGATGCGTAAAACAT
CTTCACTTGACATGAGAAAGTGGAAAGTTTGCTCATTGTTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023138-exon-sc0000443-1491911889:230991..232570 | TCONS_00023138-exon-sc0000443-1491911889:230991..232570 | Clytia hemisphaerica | exon |
| TCONS_00023138-exon-sc0000443-1510915933:230991..232570 | TCONS_00023138-exon-sc0000443-1510915933:230991..232570 | Clytia hemisphaerica | exon |
| TCONS_00023138-exon-sc0000443-1575043694:230991..232570 | TCONS_00023138-exon-sc0000443-1575043694:230991..232570 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000443 | supercontig | sc0000443:230991..232570 . |
Blast
The following BLAST results are available for this feature:
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