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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023112 ID=TCONS_00023112|Name=TCONS_00023112|organism=Clytia hemisphaerica|type=transcript|length=5345bpRun BLAST on NCBI transcript from alignment at sc0000443:92983..132726+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023112 ID=TCONS_00023112|Name=TCONS_00023112|organism=Clytia hemisphaerica|type=transcript|length=39744bp|location=Sequence derived from alignment at sc0000443:92983..132726+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00023112 vs. Swiss-Prot (Human)
Match: EFCB7 (EF-hand calcium-binding domain-containing protein 7 OS=Homo sapiens GN=EFCAB7 PE=1 SV=1) HSP 1 Score: 307.76 bits (787), Expect = 1.983e-89 Identity = 202/632 (31.96%), Postives = 349/632 (55.22%), Query Frame = 1
Query: 2527 SHSSTNKRQSSLSQQNKEKGDQINFQEV----CKAAFISELNNLREEISSGEELMQLLQQVGCNPSKKTLSKYWTQETDGYNFKQFCGIAKQESQTSKKDLIKAFQKIDKNGDGFITHDELFQVLTKRGERMTKAEVKSLIEDADFNGDGRLDYEEFCDMMDSTAKKCQQRYMDAHHGNEADSHIHREESSKLFTSSSQDEKKRNXXXXXXXXXXXXXXXXXXXXXXTRGADLKDHAK------------DDGNKSSLGVKLKEEPRDLNRWVFTSFRGCFYKEENGSVESHQYQMKVTQPSTVWLSIKPT--TPKYGKFNDEICESDMTVFIVERSSSNT---LVAFT---NSTIDGKSCLQVDLDIGLYDILTFSSGAKL---LEEESDSGQVNIVKGSGEDARLTKACKDTFLEIFYRCDMDGNGYLNRDEFNEFQLRSSGEGCDNEAWEVVKENFEVTPTRELTPNGFIDLNLMEARDPQGGPDELWITIESFGYSKKLQLSMACPFIMEVYTKKGQNTVSLVGVSNGGPPLQSALSNAIMSIANKQSVKNKRDLHLLIAEFNQRVTIAVQNQSHNIVGVRLDCSASENVLSHQNTLIISEDIEPKSLEIFHHLVAENKNERMQLKYH 4341
S ++ + ++S+ S+ + K + +E+ C+AA+++ + E I S ++L LQ G NPS+KT++KYWT +T NF FC I ++E TSK +L+K+F+++D N DG I H +L++ LTKRGE+MT+ EV ++I AD N DG+ DY +FC + +T ++C + ++ E DS + R + S + + K++ K+ + TR + L K +GN++S KL E P + W +GCF+ EE+G + SHQY+M++ Q S V+L+IKP + GK + + D ++I++ + S LV FT N + G + +L G+Y ++ ++G +L ++ +D Q+ +GE LTK K T +IF D+DGNG L+ +E+N F+LR+SGE CD +AW V +ENF+ T ELT GF+DLNLMEA D +G P +LW+T+ S GY+K L+L+ ACPF++++Y +K + + V + L+ A+ +++S + + + ++ + + +T ++N+S V + + S+N ++++ I + ++ PKS + H++ NER + Y+
Sbjct: 7 SDATFSSQKSTPSESPRTKKFPLTEEEIFYMNCRAAYLTVFKSSLENIISKDQLYLALQHAGRNPSQKTINKYWTPQTAKLNFDDFCIILRKEKPTSKAELLKSFKQLDVNDDGCILHTDLYKFLTKRGEKMTREEVNAIINLADVNADGKFDYIKFCKLYMTTNEQCLKTTLEKL---EVDSKLMRHQFGNHIEGSPERDPSPVPKPSPKITRKTDPETFLNKGD-TRSSLLSATRKFKTSVSFTVTMGANGNRNS---KLME-PNLIKDWQHMQSKGCFFLEEDGEIISHQYRMQIAQRSMVYLTIKPLNLSQVEGKPSPWL-SVDTALYILKENESQANLQLVCFTELRNREVFGWTG---ELGPGIYWLIPSTTGCRLRKKIKPVTDEAQLVYRDETGE-LFLTKEFKSTLSDIFEVIDLDGNGLLSLEEYNFFELRTSGEKCDEDAWAVCRENFD-TKRNELTRQGFMDLNLMEANDREGDPCDLWVTLHSMGYNKALELTEACPFVIDIYAEKCKPKIKAVHMEACSGQLEKAICKSVLSNGDAKVMDGYENIIVHTYSCDTWITSVIENKSDEKVIIHISNELSKNCINNRGLNIFAVEVGPKSTMVCQHVMP--LNERQEWIYY 622 The following BLAST results are available for this feature:
BLAST of TCONS_00023112 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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