TCONS_00023080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023080
Unique NameTCONS_00023080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length760

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023080 ID=TCONS_00023080|Name=TCONS_00023080|organism=Clytia hemisphaerica|type=transcript|length=760bp
TTCGGACTCGGACTGAACTCAATAATaacagaaattcttttttttctaaa
attatttataaaaatatctcTGAAGCTGAATTGTAGCTGTATATTTCAAA
CATGAAATTACATACAGAAACTATTTACTTAAGTTGAAAATATAAGAGTT
TAATATCCATGATCCATGCATGATATGTCAAAGCAAACTACAAAAAAGAC
AATTTCATACAGAAATGCATGAATAAtcagatttgaaaattttgaagatt
tgaaaatgGTTAGCATTTAAAATATATCTAATATAAATATATGCAGGTAT
ATAAAAAAGTTTATCAGTTATCTGTCATCTGTATGTAACAATAAATACTG
TCAACTGTACAACACCCACCACCACCAGTTAAAACAAAGATAATGTAAAA
TGTAATGCTTGGAAGCTTTCGATTGACTTTGAGTAATGCTCTCCTTTGct
tcgaacaaaaatcacaTCGAGTTGGTCCATGGCTTTTGGAAAGAAGAACC
TCACAACTTGAAGCTCGAATGATAAGTGAGTTAGTGGTCATAACATTTAG
TTCCTGGTCCTCTAAATATCCATTCGGTAAAAAAGACTCGAACCCTTCAA
CCTTGTATTCAATTAGTTCACGGAAATCATCATTTCCTATGCAAATTTTA
GCATTCTTTCAGATCTTGAAGCACACTTTCAATGTTATTAGCTGTTAAAA
TGACTGGAAGACTTTGAAAGAACGATCCCTGCGTTATGTCTCTTTGATAA
ACCTTTAACA
Run BLAST on NCBI

transcript from alignment at sc0000439:235461..236220

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023080 ID=TCONS_00023080|Name=TCONS_00023080|organism=Clytia hemisphaerica|type=transcript|length=760bp|location=Sequence derived from alignment at sc0000439:235461..236220 (Clytia hemisphaerica)
TGTTAAAGGTTTATCAAAGAGACATAACGCAGGGATCGTTCTTTCAAAGT
CTTCCAGTCATTTTAACAGCTAATAACATTGAAAGTGTGCTTCAAGATCT
GAAAGAATGCTAAAATTTGCATAGGAAATGATGATTTCCGTGAACTAATT
GAATACAAGGTTGAAGGGTTCGAGTCTTTTTTACCGAATGGATATTTAGA
GGACCAGGAACTAAATGTTATGACCACTAACTCACTTATCATTCGAGCTT
CAAGTTGTGAGGTTCTTCTTTCCAAAAGCCATGGACCAACTCGAtgtgat
ttttgttcgaagCAAAGGAGAGCATTACTCAAAGTCAATCGAAAGCTTCC
AAGCATTACATTTTACATTATCTTTGTTTTAACTGGTGGTGGTGGGTGTT
GTACAGTTGACAGTATTTATTGTTACATACAGATGACAGATAACTGATAA
ACTTTTTTATATACCTGCATATATTTATATTAGATATATTTTAAATGCTA
ACcattttcaaatcttcaaaattttcaaatctgaTTATTCATGCATTTCT
GTATGAAATTGTCTTTTTTGTAGTTTGCTTTGACATATCATGCATGGATC
ATGGATATTAAACTCTTATATTTTCAACTTAAGTAAATAGTTTCTGTATG
TAATTTCATGTTTGAAATATACAGCTACAATTCAGCTTCAgagatatttt
tataaataattttagaaaaaaaagaatttctgttATTATTGAGTTCAGTC
CGAGTCCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012967XLOC_012967Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023080-exon-sc0000439-1491911889:235461..236220TCONS_00023080-exon-sc0000439-1491911889:235461..236220Clytia hemisphaericaexon
TCONS_00023080-exon-sc0000439-1510915933:235461..236220TCONS_00023080-exon-sc0000439-1510915933:235461..236220Clytia hemisphaericaexon
TCONS_00023080-exon-sc0000439-1575043694:235461..236220TCONS_00023080-exon-sc0000439-1575043694:235461..236220Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000439supercontigsc0000439:235461..236220 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.441345	0.205844	0.496685	1.02427	0.379809	0.624588	0.652336	0.218964	0.197207	0.258143	0.114859	0.196181	0.386686	0.812685	0.616012	1.11193	0.960277	0.582787	0	0.594335	0.207391	0.370184	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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