TCONS_00023014 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023014
Unique NameTCONS_00023014
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length646

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023014 ID=TCONS_00023014|Name=TCONS_00023014|organism=Clytia hemisphaerica|type=transcript|length=646bp
CACGTTTGTAACGGCTTCAGGAGAAAGATTAGATAGAGTTTGATGTACAA
GttgaatattgaatttgatAACAGTATTTGGTAAAGTTggaattttaagg
ttttgaaaaaGAGGGGAAGTCTCAGcgttaaaatctgaaaaagttagaAT
ACGCAAAcatcttttttgtaattttcctaTTCGAGAGTTTTGAGTAAGGT
CTTGTCCCCAGATAATTGTTGCGTAAGACATATGGGAGTGGAATATAGCA
TAGTATAAAGTTTTGAGAACTAGTTGTGGAACAAAGTGGCGTAGTTTGGA
CAAAATACCATTAGATCTTCTAAGCTTTGTGGATAAATGATCAAAGTGAA
AATTCCAGGCAACATATTTGACATGCTTTGTGAATTTTAAGGCGTGTCCT
TCAAGGTAAAGATTCATAGAGTAAGGTACAGATTTATGTTTGCTTCTGAA
CAAAATGACCTCTGTTTTCGCAGTGTTAAGAGAAATTTTATTCGCACGAA
GCCGAGAAGAAAGTTTAACTAAATCAGAGTTCACTTTGGTTTCGAGTGAA
TTCAAATTTGAGTCAGACGAAAGAAGGCAAGTATCATCAGCAAAGAGGTT
GGTTTCGCTATTCAATATAGCTTGAGGAAGGTCATTTATGTAAATT
Run BLAST on NCBI

protein sequence of TCONS_00023014-protein

>TCONS_00023014-protein ID=TCONS_00023014-protein|Name=TCONS_00023014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
IYINDLPQAILNSETNLFADDTCLLSSDSNLNSLETKVNSDLVKLSSRLR
ANKISLNTAKTEVILFRSKHKSVPYSMNLYLEGHALKFTKHVKYVAWNFH
FDHLSTKLRRSNGILSKLRHFVPQLVLKTLYYAIFHSHMSYATIIWGQDL
TQNSRIGKLQKRCLRILTFSDFNAETSPLFQNLKIPTLPNTVIKFNIQLV
HQTLSNLSPEAVTNV
Run BLAST on NCBI

transcript from alignment at sc0000438:117375..118020

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023014 ID=TCONS_00023014|Name=TCONS_00023014|organism=Clytia hemisphaerica|type=transcript|length=646bp|location=Sequence derived from alignment at sc0000438:117375..118020 (Clytia hemisphaerica)
AATTTACATAAATGACCTTCCTCAAGCTATATTGAATAGCGAAACCAACC
TCTTTGCTGATGATACTTGCCTTCTTTCGTCTGACTCAAATTTGAATTCA
CTCGAAACCAAAGTGAACTCTGATTTAGTTAAACTTTCTTCTCGGCTTCG
TGCGAATAAAATTTCTCTTAACACTGCGAAAACAGAGGTCATTTTGTTCA
GAAGCAAACATAAATCTGTACCTTACTCTATGAATCTTTACCTTGAAGGA
CACGCCTTAAAATTCACAAAGCATGTCAAATATGTTGCCTGGAATTTTCA
CTTTGATCATTTATCCACAAAGCTTAGAAGATCTAATGGTATTTTGTCCA
AACTACGCCACTTTGTTCCACAACTAGTTCTCAAAACTTTATACTATGCT
ATATTCCACTCCCATATGTCTTACGCAACAATTATCTGGGGACAAGACCT
TACTCAAAACTCTCGAAtaggaaaattacaaaaaagatgTTTGCGTATtc
taactttttcagattttaacgCTGAGACTTCCCCTCtttttcaaaacctt
aaaattccAACTTTACCAAATACTGTTatcaaattcaatattcaaCTTGT
ACATCAAACTCTATCTAATCTTTCTCCTGAAGCCGTTACAAACGTG

Coding sequence (CDS) from alignment at sc0000438:117375..118020

>TCONS_00023014 ID=TCONS_00023014|Name=TCONS_00023014|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at sc0000438:117375..118020 (Clytia hemisphaerica)
ATTTACATAAATGACCTTCCTCAAGCTATATTGAATAGCGAAACCAACCT
CTTTGCTGATGATACTTGCCTTCTTTCGTCTGACTCAAATTTGAATTCAC
TCGAAACCAAAGTGAACTCTGATTTAGTTAAACTTTCTTCTCGGCTTCGT
GCGAATAAAATTTCTCTTAACACTGCGAAAACAGAGGTCATTTTGTTCAG
AAGCAAACATAAATCTGTACCTTACTCTATGAATCTTTACCTTGAAGGAC
ACGCCTTAAAATTCACAAAGCATGTCAAATATGTTGCCTGGAATTTTCAC
TTTGATCATTTATCCACAAAGCTTAGAAGATCTAATGGTATTTTGTCCAA
ACTACGCCACTTTGTTCCACAACTAGTTCTCAAAACTTTATACTATGCTA
TATTCCACTCCCATATGTCTTACGCAACAATTATCTGGGGACAAGACCTT
ACTCAAAACTCTCGAAtaggaaaattacaaaaaagatgTTTGCGTATtct
aactttttcagattttaacgCTGAGACTTCCCCTCtttttcaaaacctta
aaattccAACTTTACCAAATACTGTTatcaaattcaatattcaaCTTGTA
CATCAAACTCTATCTAATCTTTCTCCTGAAGCCGTTACAAACGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012939XLOC_012939Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023014-exon-sc0000438-1491911889:117375..118020TCONS_00023014-exon-sc0000438-1491911889:117375..118020Clytia hemisphaericaexon
TCONS_00023014-exon-sc0000438-1510915933:117375..118020TCONS_00023014-exon-sc0000438-1510915933:117375..118020Clytia hemisphaericaexon
TCONS_00023014-exon-sc0000438-1575043694:117375..118020TCONS_00023014-exon-sc0000438-1575043694:117375..118020Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023014-proteinTCONS_00023014-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000438supercontigsc0000438:117375..118020 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.654737	0.311225	0.575773	0.598022	0.778907	0.371929	0.648779	0.684395	0.176066	0.643265	0.410318	0.369784	0.198826	0.295561	0.233642	0.130173	0.0609451	0.250038	0.172602	0.21597	0.411322	0.344899	0	0.483957	0.533202	0.661297	0.618341	0.438303	0.396295	0.198916
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023014 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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