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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022895 ID=TCONS_00022895|Name=TCONS_00022895|organism=Clytia hemisphaerica|type=transcript|length=2381bpRun BLAST on NCBI protein sequence of TCONS_00022895-protein >TCONS_00022895-protein ID=TCONS_00022895-protein|Name=TCONS_00022895-protein|organism=Clytia hemisphaerica|type=polypeptide|length=614bp MSCRRESGPNIAMKTFSNPKMRELRHPIVKPKLSFDSLTTKANHLKEKLSRun BLAST on NCBI transcript from alignment at sc0000436:55466..68834+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022895 ID=TCONS_00022895|Name=TCONS_00022895|organism=Clytia hemisphaerica|type=transcript|length=13369bp|location=Sequence derived from alignment at sc0000436:55466..68834+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000436:55466..68834+ >TCONS_00022895 ID=TCONS_00022895|Name=TCONS_00022895|organism=Clytia hemisphaerica|type=CDS|length=16605bp|location=Sequence derived from alignment at sc0000436:55466..68834+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022895 vs. Swiss-Prot (Human)
Match: BAT1 (b(0,+)-type amino acid transporter 1 OS=Homo sapiens GN=SLC7A9 PE=1 SV=1) HSP 1 Score: 360.533 bits (924), Expect = 1.221e-114 Identity = 199/447 (44.52%), Postives = 295/447 (66.00%), Query Frame = 3
Query: 630 DILNPKNRGTLLKRTLRAYSSINLVVGTIIGSGIFLSPSPIIRDSGSIGLSLIVWAVCGLCTLLGALCYIELGTEIQRSGSEFAYLLNGFGKLPAFIYTWTSVLVIRPTSTATISLVMAEYFCKAFSHD-EDDQLTKRYIALXXXXXXXXXXXXXXRWAVIMQNVFTAAKLXXXXXXXXXXXXXXXKGNFKNFEKPFEGSEKNVFTISKGFYSGLWAYDGWNTLNFVTEEMHNPSRDMPRTLIISMSIVIICYLLCNVSYILVLGGDQIAKSSTVALDVANAYLGKASVIIPILVGLSCFGAVNGLAFSSGRLVYAAAREGHLPKVLSMVQMKRRTPIPSLIFTAVISIIMLIPNTSQFETLVGLFSFASWLFYGACFVVLLYLRFSRKTMIRPYKVFLPIPVIMVAVSVFLIVFPFLG----EWIGCTIALGVILLGIPVYIIFVH 1955
I + + + T L++ L S I+++VGTIIGSGIF+SP ++ ++ ++G LI+WA CG+ LGALC+ ELGT I +SG E+ YL+ +G +PA++++W S++VI+PTS A I L +EY C F + Q+ + +A I+ I+ VN +SVR +QN+FTAAKLV VAIII+ G + + +GN KNF+ FEG++ +V IS FY+GLWAYDGWN LN++TEE+ NP R++P +II + +V CY+L NVSY V+ ++ +S VA+ + L AS I+P+ V S GA NG F++GRL+Y A REGH+ KVLS + ++R TP P++IF +I+ I +IP +LV FSFA+WLFYG + L+ +RF+RK + RP KV + IPV+M +SVFL++ P + E++ C + IL G+ Y +FVH
Sbjct: 15 SIQSQEPKTTSLQKELGLISGISIIVGTIIGSGIFVSPKSVLSNTEAVGPCLIIWAACGVLATLGALCFAELGTMITKSGGEYPYLMEAYGPIPAYLFSWASLIVIKPTSFAIICLSFSEYVCAPFYVGCKPPQIVVKCLAAAAILFISTVNSLSVRLGSYVQNIFTAAKLVIVAIIIISGLVLLAQGNTKNFDNSFEGAQLSVGAISLAFYNGLWAYDGWNQLNYITEELRNPYRNLPLAIIIGIPLVTACYILMNVSYFTVMTATELLQSQAVAVTFGDRVLYPASWIVPLFVAFSTIGAANGTCFTAGRLIYVAGREGHMLKVLSYISVRRLTPAPAIIFYGIIATIYIIPG--DINSLVNYFSFAAWLFYGLTILGLIVMRFTRKELERPIKVPVVIPVLMTLISVFLVLAPIISKPTWEYLYCVL---FILSGLLFYFLFVH 456 The following BLAST results are available for this feature:
BLAST of TCONS_00022895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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