TCONS_00022696 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022696
Unique NameTCONS_00022696
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length412

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022696 ID=TCONS_00022696|Name=TCONS_00022696|organism=Clytia hemisphaerica|type=transcript|length=412bp
TTCCACATAAAGAAACCAAATTGTGTTTGGTTGGCCCACCAGATTCAGGG
AAGACCAGTTGGTTCACGCCATTTCAAGGCATCATTCCTGCCCGATACAT
TGCTGGGGTGATGAACGACGGCCGTTTCTCTGCTGCCATGATCGAAAGCA
ATACTCAGATCGTCATGATGGACGAGTGGACACCCGATTCGCTTTCTTGC
GAAGATGCCAAACGTGTTTTACAAGGTGGAATGAACTTCGTCCCACAGAA
GCACAAGAACGGATTGAGGATCAATTACAATTCAGGGTTTTTCATCACTA
CCAACGAGTATCCAGATTTTGGTAATCAGACCGATTGCGATGCCATCCGT
AAACGATTGGAAGTATTCCAGACATCATCATTGAAAAGAAGAGACACATC
AGTCTCAGGTGA
Run BLAST on NCBI

protein sequence of TCONS_00022696-protein

>TCONS_00022696-protein ID=TCONS_00022696-protein|Name=TCONS_00022696-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
PHKETKLCLVGPPDSGKTSWFTPFQGIIPARYIAGVMNDGRFSAAMIESN
TQIVMMDEWTPDSLSCEDAKRVLQGGMNFVPQKHKNGLRINYNSGFFITT
NEYPDFGNQTDCDAIRKRLEVFQTSSLKRRDTSVSG
Run BLAST on NCBI

transcript from alignment at sc0000431:17034..17626+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022696 ID=TCONS_00022696|Name=TCONS_00022696|organism=Clytia hemisphaerica|type=transcript|length=593bp|location=Sequence derived from alignment at sc0000431:17034..17626+ (Clytia hemisphaerica)
TTCCACATAAAGAAACCAAATTGTGTTTGGTTGGCCCACCAGATTCAGGG
AAGACCAGTTGGTTCACGCCATTTCAAGGCATCATTCCTGCCCGATACAT
TGCTGGGGTGATGAACGACGGCCGTTTCTCTGCTGCCATGATCGAAAGCA
ATACTCAGATCGTCATGATGGACGAGTGGACACCCGATTCGCTTTCTTGC
GAAGATGCCAAACGTGTTTTACAAGGCGAGTAGTGGTTTTTACACCCATC
AATGTACTTGTGGTATTGTTCGAGCGCCTACTCTTTAGAAAATTGAGGTC
AGTTTTATTCACTACTGTCTAATTTGCCTTGCTTACCATTCAATTTTGGA
ACTTTGTGTCTTGCTCACTATCTAAATTCTTTCAATTTACTTCTTCACGT
GTTCAGGTGGAATGAACTTCGTCCCACAGAAGCACAAGAACGGATTGAGG
ATCAATTACAATTCAGGGTTTTTCATCACTACCAACGAGTATCCAGATTT
TGGTAATCAGACCGATTGCGATGCCATCCGTAAACGATTGGAAGTATTCC
AGACATCATCATTGAAAAGAAGAGACACATCAGTCTCAGGTGA

Coding sequence (CDS) from alignment at sc0000431:17034..17626+

>TCONS_00022696 ID=TCONS_00022696|Name=TCONS_00022696|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0000431:17034..17626+ (Clytia hemisphaerica)
CCACATAAAGAAACCAAATTGTGTTTGGTTGGCCCACCAGATTCAGGGAA
GACCAGTTGGTTCACGCCATTTCAAGGCATCATTCCTGCCCGATACATTG
CTGGGGTGATGAACGACGGCCGTTTCTCTGCTGCCATGATCGAAAGCAAT
ACTCAGATCGTCATGATGGACGAGTGGACACCCGATTCGCTTTCTTGCGA
AGATGCCAAACGTGTTTTACAAGGTGGAATGAACTTCGTCCCACAGAAGC
ACAAGAACGGATTGAGGATCAATTACAATTCAGGGTTTTTCATCACTACC
AACGAGTATCCAGATTTTGGTAATCAGACCGATTGCGATGCCATCCGTAA
ACGATTGGAAGTATTCCAGACATCATCATTGAAAAGAAGAGACACATCAG
TCTCAGGTCCACATAAAGAAACCAAATTGTGTTTGGTTGGCCCACCAGAT
TCAGGGAAGACCAGTTGGTTCACGCCATTTCAAGGCATCATTCCTGCCCG
ATACATTGCTGGGGTGATGAACGACGGCCGTTTCTCTGCTGCCATGATCG
AAAGCAATACTCAGATCGTCATGATGGACGAGTGGACACCCGATTCGCTT
TCTTGCGAAGATGCCAAACGTGTTTTACAAGGTGGAATGAACTTCGTCCC
ACAGAAGCACAAGAACGGATTGAGGATCAATTACAATTCAGGGTTTTTCA
TCACTACCAACGAGTATCCAGATTTTGGTAATCAGACCGATTGCGATGCC
ATCCGTAAACGATTGGAAGTATTCCAGACATCATCATTGAAAAGAAGAGA
CACATCAGTCTCAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012760XLOC_012760Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022696-proteinTCONS_00022696-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022696-exon-sc0000431-1491911889:17034..17258TCONS_00022696-exon-sc0000431-1491911889:17034..17258Clytia hemisphaericaexon
TCONS_00022696-exon-sc0000431-1510915933:17034..17258TCONS_00022696-exon-sc0000431-1510915933:17034..17258Clytia hemisphaericaexon
TCONS_00022696-exon-sc0000431-1575043694:17034..17258TCONS_00022696-exon-sc0000431-1575043694:17034..17258Clytia hemisphaericaexon
TCONS_00022696-exon-sc0000431-1491911889:17440..17626TCONS_00022696-exon-sc0000431-1491911889:17440..17626Clytia hemisphaericaexon
TCONS_00022696-exon-sc0000431-1510915933:17440..17626TCONS_00022696-exon-sc0000431-1510915933:17440..17626Clytia hemisphaericaexon
TCONS_00022696-exon-sc0000431-1575043694:17440..17626TCONS_00022696-exon-sc0000431-1575043694:17440..17626Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000431supercontigsc0000431:17034..17626 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.21796	0.19788	0	0	0	0.898763	0.420706	1.00181	1.85474	2.23654	1.67045	1.06073	1.34303	0.659301	0.730462	1.18987	0.134473	1.69882	0.868687	4.87817	6.74834	2.96969	3.83618	2.22905	1.17225	8.00146	6.43165	1.64746	1.11532
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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