TCONS_00022630 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022630
Unique NameTCONS_00022630
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length325

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022630 ID=TCONS_00022630|Name=TCONS_00022630|organism=Clytia hemisphaerica|type=transcript|length=325bp
ATTGACCTCCTCAAGGATGTTTTGAAACGAGGtgcccaaggacccaagtc
gttcgtccaaggtggagacgcccaaggacccaagtcgttcgtccaaggtg
gagacgtCAAATATCCTTTCACTGATTATACAGGACCGCCCTACGACGCC
AAACAAACCAAAACCTcacaaaataacaaaggcaaagATGTTGTTATAAA
CTTGAATGTGTTCTAATTATTTTATtggataatttttgttttgttaagtt
AAAAAATACATCATTTTagtcaaaaaataaatcttgAATGTATTTGTCCG
TATTTGTCTTTCACATTATAATCAT
Run BLAST on NCBI

transcript from alignment at sc0000429:206660..207287+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022630 ID=TCONS_00022630|Name=TCONS_00022630|organism=Clytia hemisphaerica|type=transcript|length=628bp|location=Sequence derived from alignment at sc0000429:206660..207287+ (Clytia hemisphaerica)
AGTAAGTGACTTGCAAAGTTTATtaaataattgttttgtttgacCATCTT
TAAGGTTTTCACCTCTTGACTCTCGAATATTGAGATAATTTAGCAAAAAG
GTCAAAATTCCTTTGCAAACCCTTATATGTCATCTATAGAATTTATTACT
TTTGTTTGCAAGTGTCTATCAAAGCTTTCTACGATTACTGTTGGGTATTC
CTTATCCTAATCTGTGTCTCTTTTCTTTTCAGTTGACCTCCTCAAGGATG
TTTTGAAACGAGGtgcccaaggacccaagtcgttcgtccaaggtggtgAC
GCTCAAGGACCCAaatcgttcgtccaaggtggtgacgcccaaggacccaa
gtcgttcgtccaaggtggagacgcccaaggacccaagtcgttcgtccaag
gtggagacgtCAAATATCCTTTCACTGATTATACAGGACCGCCCTACGAC
GCCAAACAAACCAAAACCTcacaaaataacaaaggcaaagATGTTGTTAT
AAACTTGAATGTGTTCTAATTATTTTATtggataatttttgttttgttaa
gttAAAAAATACATCATTTTagtcaaaaaataaatcttgAATGTATTTGT
CCGTATTTGTCTTTCACATTATAATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012708XLOC_012708Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022630-exon-sc0000429-1491911889:206660..206660TCONS_00022630-exon-sc0000429-1491911889:206660..206660Clytia hemisphaericaexon
TCONS_00022630-exon-sc0000429-1510915933:206660..206660TCONS_00022630-exon-sc0000429-1510915933:206660..206660Clytia hemisphaericaexon
TCONS_00022630-exon-sc0000429-1575043694:206660..206660TCONS_00022630-exon-sc0000429-1575043694:206660..206660Clytia hemisphaericaexon
TCONS_00022630-exon-sc0000429-1491911889:206892..206951TCONS_00022630-exon-sc0000429-1491911889:206892..206951Clytia hemisphaericaexon
TCONS_00022630-exon-sc0000429-1510915933:206892..206951TCONS_00022630-exon-sc0000429-1510915933:206892..206951Clytia hemisphaericaexon
TCONS_00022630-exon-sc0000429-1575043694:206892..206951TCONS_00022630-exon-sc0000429-1575043694:206892..206951Clytia hemisphaericaexon
TCONS_00022630-exon-sc0000429-1491911889:207024..207287TCONS_00022630-exon-sc0000429-1491911889:207024..207287Clytia hemisphaericaexon
TCONS_00022630-exon-sc0000429-1510915933:207024..207287TCONS_00022630-exon-sc0000429-1510915933:207024..207287Clytia hemisphaericaexon
TCONS_00022630-exon-sc0000429-1575043694:207024..207287TCONS_00022630-exon-sc0000429-1575043694:207024..207287Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000429supercontigsc0000429:206660..207287 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20269.6	19014.2	13930.3	11257.7	0	0.45246	0	0	9.47241	25.4782	4.91439	2.27292	0	0.409327	0	0.922283	0.299556	0	0.132185	0	24.614	18.8668	7493.83	6056.17	0	0	340.789	504.056	4130.24	4600.56
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022630 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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