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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022320 ID=TCONS_00022320|Name=TCONS_00022320|organism=Clytia hemisphaerica|type=transcript|length=1947bpRun BLAST on NCBI transcript from alignment at sc0000411:44119..55996- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022320 ID=TCONS_00022320|Name=TCONS_00022320|organism=Clytia hemisphaerica|type=transcript|length=11878bp|location=Sequence derived from alignment at sc0000411:44119..55996- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00022320 vs. Swiss-Prot (Human)
Match: T2FA (General transcription factor IIF subunit 1 OS=Homo sapiens GN=GTF2F1 PE=1 SV=2) HSP 1 Score: 127.487 bits (319), Expect = 4.795e-31 Identity = 68/169 (40.24%), Postives = 112/169 (66.27%), Query Frame = 1
Query: 148 EQYTEYKLRVPKNLVKRYNVMKINSPRPIKLDQVKEANMVRK-TKKQVYVEDDTVAMPTTGAGSVYNYXXXXXXXXXXXGYITRKISPEDLPYALRLNGKGGKRYTG-RKEPILDHSAYFIITQSPDGVFEAVPVQAWYNFMPDIDYATLSADQVEQEFSKRDRRMNAY 648
+ TEY +RVPKN K+YN+M N+ + +A + R + K++Y E++ MP +GAGS +N + +EEARRK+ G + ++ PED P+ LR+NGK G+++ G +K + ++++Y+I TQ PDG FEA PV WYNF P + TL+A++ E+E+ +R++ +N +
Sbjct: 9 QNVTEYVVRVPKNTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIYQEEE---MPESGAGSEFNRKLREEARRKKYGIVLKEFRPEDQPWLLRVNGKSGRKFKGIKKGGVTENTSYYIFTQCPDGAFEAFPVHNWYNFTPLARHRTLTAEEAEEEWERRNKVLNHF 174 HSP 2 Score: 86.2705 bits (212), Expect = 1.132e-17 Identity = 43/90 (47.78%), Postives = 60/90 (66.67%), Query Frame = 1
Query: 1486 TVPSSAGNDRSASPAVRSSTPSDGH-NITESAIRRYLTHKPMTTADLMRKFKPKKTGLSKEQTVSAIAAILKKIQPHQEKIEGKLYLSIK 1752
T P S + P +TP+ G +TE A+RRYLT KPMTT DL++KF+ KKTGLS EQTV+ +A ILK++ P ++ I K++ S+K
Sbjct: 427 TGPQSLSGKSTPQPPSGKTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLK 516 The following BLAST results are available for this feature:
BLAST of TCONS_00022320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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