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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022056 ID=TCONS_00022056|Name=TCONS_00022056|organism=Clytia hemisphaerica|type=transcript|length=1632bp
gtttcagataaaaaaagaacacaaatttttgaaaacacacAACTAAAAAA
TGGCACCAACTCAATCAGAACCGATGTACTGTTCCCAACAAATCAATATC
CCACCAGAGTTAccaaatattttgaaacaattCACCAAAGCAGCAATTCG
AACACAACCTACTGATATTTTACAGTGGTCGGCCGCTTACTTTGATGCAC
TATCTAAAGGAGAAAGACCTCCTGTCAAAGAGAGACTAGATTTCCAGCTA
GGCCAAGCAaaagatcaaaatttaaccaaagAAGCTATTGCAGTGTTACA
TCGTCAAGTCGGTGACAAGCCTGTGGTTGAGTACTCGCGTGTTGAAGACA
AATGGCATGCATTGTGTTTGTCTAGCCTGGATCTGGATGCTGTCATGAGG
ATCGGTTCGTTCCCTGAGGAATTTGAATGGCTGAAATTTTTGGCTATTGT
TTGTACCCACATCAGTGAAGATATAGGAGGTGCTTTGAAAATGATATGTG
AAATCTTAACCAAAGATCTACATGGAGGTCAAGCTCGTATCGAATTCGAG
TTATTCCGCACCTTGTACAAGTACCTTGCGACAATCGACGGCGATATTCC
ATTACGTCACGTCAACGCCGTCTTGGAGCATCTGTCATACGACGTTGAAC
GTCAAAATGGAATGATTTCACCCATGAATTTCCTCAGTGAAACATGCCCA
AGTCTAAGCAAGGAAGATGAGTAATATTGGTGGAAAATTGGTTGCTTGTG
TGTGTTATGTTGATGAGAGGTTTGCTCGTTCTTTTTTATGTCTTTTGTCT
CCCTGTACATAATGTGTGATAATTCTTGTGTGCAAGTATCTCTTTTGAAG
CTTTTGACCATGTTCGCAGGTAACTGGTGAAACGAAAAATGAAGTCATTC
TATTGgctagaagtgacgtaaaagttCGGAGGGAAACTGAACCGTAGTGT
GTGAACGTGGTGTTTGCATATTCCTATACGACTAATTGAAGGTGATTTGT
TTATAATTtatcctaaaaatgaaaatcctgataataaaatgcaaaagttt
ttttaatcacATTTAATGTAGCCGTTGTCAGGCCTCAAGTAGTAATTTCA
GATGTACTATATTTCAAAATAGATTACAATAAATACAGACATGGAATGTA
TATGGGAAGTCTCAAAACATAATGTCCCAGTTAATAGCTGGTTAAAATGC
CAATAACTACCTTTTCAGAGCTTATCAAAATAACAGTGAAAGGCAGTAAT
GTATTTAATTTAGTTGCTGATTTTCCTGAATCTAAAGTGCCATTAGAAGC
TAGAGACATAATGTGGACGATTTTCTTTTTAGTTATGTCTTGCCTTATGT
CTGATAACCTGTGCATAGAAAAGATAAAGCTCGCGTACCAAAATGAAGCC
AGCGTCAGTTTCGAGCGTCAGCGTCAGCGTCAGCGTCAGCGTCAACGCGA
ATCagattcaaatcgaaagtggttATAAAAAGTGTTCTAGCCagcttgga
tcgaacggtatggctcccatttatagaaaggacgcaacctatacccatta
gtgaccttttacaaaaaaaatgaagttcatagctgcttccaatttttcag
ttagtcgaggaacgtgtccctaactgacttta Run BLAST on NCBI transcript from alignment at sc0000403:64711..67902- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022056 ID=TCONS_00022056|Name=TCONS_00022056|organism=Clytia hemisphaerica|type=transcript|length=3192bp|location=Sequence derived from alignment at sc0000403:64711..67902- (Clytia hemisphaerica)
GTTTCAGATAAAAAAAGAACACAAATTTTTGAAAACACACAACTAAAAAA
TGGCACCAACTCAATCAGAACCGATGTACTGTTCCCAACAAATCAATATC
CCACCAGAGTTACCAAATATTTTGAAACAATTCACCAAAGCAGCAATTCG
AACACAACCTACTGATATTTTACAGGTAATATCATTTTCATCTGATAATC
ATCTACATGTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTCTTTACGTTGA
ATTGCTATTATTTTCAAGTAAAAATTTGAAAATTCAAAATCAGATATCTC
AACTTTGGAAAATAGTTGGGGCAAAAACTTTGGAGGTGTTTCTTAAGACC
ATAAAAGGTACCTCTAAGCCAAGTATAAAAAAAATCATAATCTGATAATC
CTTTTAAGCAACAGTGAAGGATAATTTAGATAATTTCTAATATCGATAAT
ATCGATGATCTGGATTTTGATCTTTTCCATGGAATTTCTTATTGTTTCTA
TGTTCGCGGAAACATTCTTAATATTTTAAGCTTAAGTTCCCATGAATATT
CAAATAATATATATTTTAATTAATTTCCCTGATATTTTGTTGTTTTAAGT
TGCGAAAGAGAAAATTAGATGAGCCTCTTCAAGCGAAAAACAAGATGTTA
ATATTTTCATTTCATCTTTTAATTTACTTTTGTAGTGGTCGGCCGCTTAC
TTTGATGCACTATCTAAAGGAGAAAGACCTCCTGTCAAAGAGAGACTAGA
TTTCCAGCTAGGCCAAGCAAAAGATCAAAATTTAACCAAAGAAGCTATTG
CAGTGTTACATCGTCAAGTCGGTGACAAGCCTGTGGTTGAGTACTCGCGT
GTTGAAGACAAATGGCATGCATTGTGTTTGTCTAGCCTGGATCTGGATGC
TGTCATGAGGATCGGTTCGTTCCCTGAGGAATTTGAATGGCTGAAATTTT
TGGCTATTGTTTGTACCCACATCAGTGAAGATATAGGAGGTGCTTTGAAA
ATGATATGTGAAATCTTAACCAAAGATCTACATGGAGGTCAAGCTCGTAT
CGAATTCGAGTTATTCCGCACCTTGTACAAGTACCTTGCGACAATCGACG
GCGATATTCCATTACGTCACGTCAACGCCGTCTTGGAGCATCTGTCATAC
GACGTTGAACGTCAAAATGGAATGATTTCACCCATGAATTTCCTCAGTGA
AACATGCCCAAGTCTAAGCAAGGAAGATGAGTAATATTGGTGGAAAATTG
GTTGCTTGTGTGTGTTATGTTGATGAGAGGTTTGCTCGTTCTTTTTTATG
TCTTTTGTCTCCCTGTACATAATGTGTGATAATTCTTGTGTGCAAGTATC
TCTTTTGAAGCTTTTGACCATGTTCGCAGGTAACTGGTGAAACGAAAAAT
GAAGTCATTCTATTGGCTAGAAGTGACGTAAAAGTTCGGAGGGAAACTGA
ACCGTAGTGTGTGAACGTGGTGTTTGCATATTCCTATACGACTAATTGAA
GGTGATTTGTTTATAATTTATCCTAAAAATGAAAATCCTGATAATAAAAT
GCAAAAGTTTTTTTAATCACATTTAATGTAGCCGTTGTCAGGCCTCAAGT
AGTAATTTCAGATGTACTATATTTCAAAATAGATTACAATAAATACAGAC
ATGGAATGTATATGGGAAGTCTCAAAACATAATGTCCCAGTTAATAGCTG
GTTAAAATGCCAATAACTACCTTTTCAGAGCTTATCAAAATAACAGTGAA
AGGCAGTAATGTATTTAATTTAGTTGCTGATTTTCCTGAATCTAAAGTGC
CATTAGAAGCTAGAGACATAATGTGGACGATTTTCTTTTTAGTTATGTCT
TGCCTTATGTCTGATAACCTGTGCATAGAAAAGATAAAGCTCGCGTACCA
AAATGAAGCCAGCGTCAGTTTCGAGCGTCAGCGTCAGCGTCAGCGTCAGC
GTCAACGCGAATCAGATTCAAATCGAAAGTGGTTATAAAAAGTGTTCTAG
CCAGCTTGGATCGAACGGTATGGCTCCCATTTATAGAAAGGACGCAACCT
ATACCCATTAGTGACCTTTTACAAAAAAAATGAAGTTCATAGCTGCTTCC
AATTTTTCAGTTAGTCGAGGAACGTGTCCCTAACTGACTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022056-exon-sc0000403-1575043694:67728..67902 | TCONS_00022056-exon-sc0000403-1575043694:67728..67902 | Clytia hemisphaerica | exon |
| TCONS_00022056-exon-sc0000403-1575043694:64711..66167 | TCONS_00022056-exon-sc0000403-1575043694:64711..66167 | Clytia hemisphaerica | exon |
| TCONS_00022056-exon-sc0000403-1510915933:67728..67902 | TCONS_00022056-exon-sc0000403-1510915933:67728..67902 | Clytia hemisphaerica | exon |
| TCONS_00022056-exon-sc0000403-1510915933:64711..66167 | TCONS_00022056-exon-sc0000403-1510915933:64711..66167 | Clytia hemisphaerica | exon |
| TCONS_00022056-exon-sc0000403-1491911889:67728..67902 | TCONS_00022056-exon-sc0000403-1491911889:67728..67902 | Clytia hemisphaerica | exon |
| TCONS_00022056-exon-sc0000403-1491911889:64711..66167 | TCONS_00022056-exon-sc0000403-1491911889:64711..66167 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000403 | supercontig | sc0000403:64711..67902 - |
Blast
BLAST of TCONS_00022056 vs. Swiss-Prot (Human)
Match: ROP1L (Ropporin-1-like protein OS=Homo sapiens GN=ROPN1L PE=1 SV=2) HSP 1 Score: 187.963 bits (476), Expect = 4.129e-55 Identity = 93/206 (45.15%), Postives = 132/206 (64.08%), Query Frame = 2
Query: 74 MYCSQQINIPPELPNILKQFTKAAIRTQPTDILQWSAAYFDALSKGERPPVKERLDFQLG-QAKDQNLTKEAIAVLHRQVGDKPVVEYSRVEDKWHALCLSSLDLDAVMRIGSFPEEFEWLKFLAIVCTHISEDIGGALKMICEILTKDLHGGQARIEFELFRTLYKYLATIDGDIPLRHVNAVLEHLSYDVE-RQNGMISPMNFL 685
M+C+QQI+IPPELP+ILKQFTKAAIRTQP D+L+WSA YF ALS+G+ PVK+R++ Q D LT+ + VLH+Q K VE + +E KW LCL A++++ + +W+ FLA+ C+ + + ALK +CEILT D GG ARI F+ F +Y+YLA +D D+ + L L +++ R+NGMI +F
Sbjct: 7 MFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDRMEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPCENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDSDVSPLETESYLASLKENIDARKNGMIGLSDFF 212
The following BLAST results are available for this feature:
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