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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021969 ID=TCONS_00021969|Name=TCONS_00021969|organism=Clytia hemisphaerica|type=transcript|length=1590bp
TTTACCTTTTGGGACATAAGCCGATCTCCAGGGTCCAGGGTCTTGTGCTT
TGGGTCCGTCTTCAAGATAACAGGAACCAAGGAGTGATTGTTGACTGCAA
AACATGACTTTCTTGGGGACAGTTTTCATCGTTTCCTTATCAGTGAAAAA
GTCTTTCAAGTATGTTGATAAATGTTCATACATTTTCTCATTGTTATAGT
AATAATTGACTGTGTATCGCATCTTGTAGTGTTCGAACGGGTTCAGGAAA
GGTTTGAAAACTTTCTTGTTATATTCTCTAGAGTTTTGGATCATGTCTAA
GAGAAGATGCATAAAAACGTATGcttttcttcttgatttttcctttttgg
CTTGGTCCATTGTTCTCTTCGATGGTTTCTTGTTATTGCTTTTGGATGGT
GCAGGATTGTTTTTGGATGGTGCTGGATTGCTTTTGGATGGTGCGGGATT
GCTTTTGGATGGTGCGGGATTGCTTTTGGATGGTGCAGGATTGCTTTTGG
ATGGTGCAGGATTGCTTTTGGATGGTGCAGGATTGCCATTGGATGCTCCG
GGATTGTTTGGAATTGCATTATCGTCGCTTTCTGAAGGCGTTTTACCACT
AGAGACGTTATCAAAGTATTTTTCTCCTACAATCTTATGGATGACTTCCA
GACTTTTCAAGTATGTTTGGTAATGGTAGGAGCTGATCTTAGAGTACAAT
TCATATAACTTCAAACAATTGGTAGCGAATGtatctttttcttcaatttc
atcTTGCGTGGGGATTGGCTCCCTTTCTTCCACGTGTAATATCTTACGTT
CCGATTTCACCTTTCTGGCTTGGATATCAAAATCACAAACTTTAGAAATA
TGATGTTCAATCTTGCCAAGTAGGTGGGTGCTGGATGTTAATACTTTATA
AATTTGCGGTGTGACTTCATCAAACAGTTGTTGCTTAACTTCCTCCTTCC
CACCCATATCCTCAATATTGAATTGCTTCTTATCCTCACCAACCAACGGT
TTCACTTCATCGAATTTCTCAATCATATCTAAATGTTTGAGATAAACTTC
AGTCAATCTCTTATAACCATTCCAATCAGCACTTAACTGAGTCTCCGAGA
ATTTCCTTAACGCTTTTTCAATAGCCTTCTGTAGCTTGGATGCTTCACTC
TCAGGAGGGCCATTCTTCTTTTTATCTATGATCGTCAAGATGGTTTTAAT
GATGTCTAAAGACATAGCAACGAGGTACCCAACAGGTCCACCCACCATAG
ATGCGATCCCAGAGACGATTGTGATACTTGAAATCGCGATCCCCATTTTA
TCTTTCTTCTCAATCTTATCGTAAAGTGATTCTGCAGCTCCTAAGGATGT
AGCTAATCCAcctaaaaaagaaagagagTAAGTATGCCTTGATAACATTA
tacttttccaaaaatttcaagaaagtaagccaaaacaagctagatgctga
aagttggatagcaatgcgaggagaaaaaaatcagtcaaaaaatatagcgt
ttagcgaaaatgcataacgcaataaattcatcattgattgttgatggggg
gagagggaagggttgtaggggaaaaataaatagaaagttc Run BLAST on NCBI transcript from alignment at sc0000401:207684..209315+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021969 ID=TCONS_00021969|Name=TCONS_00021969|organism=Clytia hemisphaerica|type=transcript|length=1632bp|location=Sequence derived from alignment at sc0000401:207684..209315+ (Clytia hemisphaerica)
TTTACCTTTTGGGACATAAGCCGATCTCCAGGGTCCAGGGTCTTGTGCTT
TGGGTCCGTCTTCAAGATAACAGGAACCAAGGAGTGATTGTTGACTGCAA
AACATGACTTTCTTGGGGACAGTTTTCATCGTTTCCTTATCAGTGAAAAA
GTCTTTCAAGTATGTTGATAAATGTTCATACATTTTCTCATTGTTATAGT
AATAATTGACTGTGTATCGCATCTTGTAGTGTTCGAACGGGTTCAGGAAA
GGTTTGAAAACTTTCTTGTTATATTCTCTAGAGTTTTGGATCATGTCTAA
GAGAAGATGCATAAAAACGTATGcttttcttcttgatttttcctttttgg
CTTGGTCCATTGTTCTCTTCGATGGTTTCTTGTTATTGCTTTTGGATGGT
GCAGGATTGTTTTTGGATGGTGCTGGATTGCTTTTGGATGGTGCGGGATT
GCTTTTGGATGGTGCGGAATTGGTTTTGGATGGTGCGGGATTGCTTTTGG
AAGGTGCGGGATTGCTTTTGGATGGTGCAGGATTGCTTTTGGATGGTGCA
GGATTGCTTTTGGATGGTGCAGGATTGCCATTGGATGCTCCGGGATTGTT
TGGAATTGCATTATCGTCGCTTTCTGAAGGCGTTTTACCACTAGAGACGT
TATCAAAGTATTTTTCTCCTACAATCTTATGGATGACTTCCAGACTTTTC
AAGTATGTTTGGTAATGGTAGGAGCTGATCTTAGAGTACAATTCATATAA
CTTCAAACAATTGGTAGCGAATGtatctttttcttcaatttcatcTTGCG
TGGGGATTGGCTCCCTTTCTTCCACGTGTAATATCTTACGTTCCGATTTC
ACCTTTCTGGCTTGGATATCAAAATCACAAACTTTAGAAATATGATGTTC
AATCTTGCCAAGTAGGTGGGTGCTGGATGTTAATACTTTATAAATTTGCG
GTGTGACTTCATCAAACAGTTGTTGCTTAACTTCCTCCTTCCCACCCATA
TCCTCAATATTGAATTGCTTCTTATCCTCACCAACCAACGGTTTCACTTC
ATCGAATTTCTCAATCATATCTAAATGTTTGAGATAAACTTCAGTCAATC
TCTTATAACCATTCCAATCAGCACTTAACTGAGTCTCCGAGAATTTCCTT
AACGCTTTTTCAATAGCCTTCTGTAGCTTGGATGCTTCACTCTCAGGAGG
GCCATTCTTCTTTTTATCTATGATCGTCAAGATGGTTTTAATGATGTCTA
AAGACATAGCAACGAGGTACCCAACAGGTCCACCCACCATAGATGCGATC
CCAGAGACGATTGTGATACTTGAAATCGCGATCCCCATTTTATCTTTCTT
CTCAATCTTATCGTAAAGTGATTCTGCAGCTCCTAAGGATGTAGCTAATC
CAcctaaaaaagaaagagagTAAGTATGCCTTGATAACATTAtacttttc
caaaaatttcaagaaagtaagccaaaacaagctagatgctgaaagttgga
tagcaatgcgaggagaaaaaaatcagtcaaaaaatatagcgtttagcgaa
aatgcataacgcaataaattcatcattgattgttgatggggggagaggga
agggttgtaggggaaaaataaatagaaagttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021969-exon-sc0000401-1491911889:207684..208144 | TCONS_00021969-exon-sc0000401-1491911889:207684..208144 | Clytia hemisphaerica | exon |
| TCONS_00021969-exon-sc0000401-1510915933:207684..208144 | TCONS_00021969-exon-sc0000401-1510915933:207684..208144 | Clytia hemisphaerica | exon |
| TCONS_00021969-exon-sc0000401-1575043694:207684..208144 | TCONS_00021969-exon-sc0000401-1575043694:207684..208144 | Clytia hemisphaerica | exon |
| TCONS_00021969-exon-sc0000401-1491911889:208187..209315 | TCONS_00021969-exon-sc0000401-1491911889:208187..209315 | Clytia hemisphaerica | exon |
| TCONS_00021969-exon-sc0000401-1510915933:208187..209315 | TCONS_00021969-exon-sc0000401-1510915933:208187..209315 | Clytia hemisphaerica | exon |
| TCONS_00021969-exon-sc0000401-1575043694:208187..209315 | TCONS_00021969-exon-sc0000401-1575043694:208187..209315 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000401 | supercontig | sc0000401:207684..209315 + |
Blast
The following BLAST results are available for this feature:
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