TCONS_00022011 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022011
Unique NameTCONS_00022011
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1579

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022011 ID=TCONS_00022011|Name=TCONS_00022011|organism=Clytia hemisphaerica|type=transcript|length=1579bp
GTCATAAATTTATATTCCAAAATTGTTTCAAGATTTTGATGTCAACAGAA
ATTGCAAAGATTTGAGTTCCTGCTTTTTCTGCCagcgtcatcaaattttt
tttaaatctctgCAAAAGGAAAAGTCCTTGTGACATAAGCTATCATTAGC
AAAATTCTCACAAATTTTTGTTAGCTAgtttaattattttctttattgta
ATGCTATCTCaatatataaaatttataaTACTAGGATGGGTTTAATTGAG
TCCCGAGAAATTACTAAAAAGAttgacacgcattaatttacctgAGCACA
CCTTTTTTCAGAATCTACTAATCAGGGTCTactccttttttttctcagtg
tGAAGTAAACTATAATGTCTTCTTAAATTATTTATTCTGCGGAATTTTCT
TCCACAAACATGACATTCAAATGCTTTCTCATCTGTGTGACAAAGAATAT
GGTTCTTCAGAGTAGTTGACTGACTAAATTCTTTACTACAAACATTACAC
TTGTATGGTTTTTCCCCAGTATGAACTCGCAGATGCCTTTTTAACCGATC
TAGATGTCGAAAGTCTTTATGGCATGTCTTACACTTGTATGGCTTTTCCC
CAGTATGAACGCGAAGATGTAATCGCAATGGACTTGCTTTACTGAACTCC
TTATCACAAACACCACATTTATAGCGCTTTTCACCAAGATGTACAAGGGA
ATGCAAAGAAAGCAATGCATGcgttgagaattttttttcacaaacacTGC
ATTTGTAAGGGGTTTTGCATCCATTGGTTTTCAAATGACTGTTGAATAAA
CCGCCATATTCAAACTCTTTCTCACAATCTGCACATTGTTGAAGTTGTTT
AAGCTCACCATGTGTTGCAAAATGTCTTTGGAGAGTTGGCAAATACATGA
ACCCTTTGCCACAGATTTTACATAAGTGTCGTTTCTTATCTTTGAAAGTG
TCAATAAACATTTGATCTTTacatttcaaagcaaacatCTGCAGATCGCT
AGAATTCTGCTTTGTTGGTGATATTGAAGGATTGTTAGCACTGTTGTTAA
TAATACAATCTAATTGATTTGGTACCTTGATTTCCTCTGTTCCCTGATTA
CAGTTTGACTTTTCAGGGGTGATAAAAACAAGCTTCCTTTTGGTCTCTGG
CTTCTcaacttcttcatttttaaggtgatATTGTGCATGGACAATCAAAT
TATttggaaattgaaatttctttccGCATACACCAcattgaaaaagtttc
aaactatCATCAACATCAACCTGCTGCTGAAATATGTTAGATTCTTGAAA
ACCTTTTCCGAAAACATCATATGCATATGGGTTTTCACCTTCATGAATTC
GTAAATGAGTTTGTAACGTACAAGATTTCTTGAACTGCTTCCCACAAACT
TTGCAATCAAAATTGACAGTTTCAACAATTAAATTTTCTGGTGTGCTGTT
GTGAATTTGTTCCCATTTTCTTTCCATTTTACGTGTCTGCATTATTCTAA
CCAGCCTTACTCTAAATTAAACCATATTTTCAGCTTAGATtaaatctatc
tatctatatatcaAGTATTAAAAGGTCCT
Run BLAST on NCBI

protein sequence of TCONS_00022011-protein

>TCONS_00022011-protein ID=TCONS_00022011-protein|Name=TCONS_00022011-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
MQTRKMERKWEQIHNSTPENLIVETVNFDCKVCGKQFKKSCTLQTHLRIH
EGENPYAYDVFGKGFQESNIFQQQVDVDDSLKLFQCGVCGKKFQFPNNLI
VHAQYHLKNEEVEKPETKRKLVFITPEKSNCNQGTEEIKVPNQLDCIINN
SANNPSISPTKQNSSDLQMFALKCKDQMFIDTFKDKKRHLCKICGKGFMY
LPTLQRHFATHGELKQLQQCADCEKEFEYGGLFNSHLKTNGCKTPYKCSV
CEKKFSTHALLSLHSLVHLGEKRYKCGVCDKEFSKASPLRLHLRVHTGEK
PYKCKTCHKDFRHLDRLKRHLRVHTGEKPYKCNVCSKEFSQSTTLKNHIL
CHTDEKAFECHVCGRKFRRINNLRRHYSLLHTEKKKE
Run BLAST on NCBI

transcript from alignment at sc0000401:69762..71340

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022011 ID=TCONS_00022011|Name=TCONS_00022011|organism=Clytia hemisphaerica|type=transcript|length=1579bp|location=Sequence derived from alignment at sc0000401:69762..71340 (Clytia hemisphaerica)
AGGACCTTTTAATACTtgatatatagatagatagatttaATCTAAGCTGA
AAATATGGTTTAATTTAGAGTAAGGCTGGTTAGAATAATGCAGACACGTA
AAATGGAAAGAAAATGGGAACAAATTCACAACAGCACACCAGAAAATTTA
ATTGTTGAAACTGTCAATTTTGATTGCAAAGTTTGTGGGAAGCAGTTCAA
GAAATCTTGTACGTTACAAACTCATTTACGAATTCATGAAGGTGAAAACC
CATATGCATATGATGTTTTCGGAAAAGGTTTTCAAGAATCTAACATATTT
CAGCAGCAGGTTGATGTTGATGatagtttgaaactttttcaatgTGGTGT
ATGCggaaagaaatttcaatttccaaATAATTTGATTGTCCATGCACAAT
atcaccttaaaaatgaagaagttgAGAAGCCAGAGACCAAAAGGAAGCTT
GTTTTTATCACCCCTGAAAAGTCAAACTGTAATCAGGGAACAGAGGAAAT
CAAGGTACCAAATCAATTAGATTGTATTATTAACAACAGTGCTAACAATC
CTTCAATATCACCAACAAAGCAGAATTCTAGCGATCTGCAGatgtttgct
ttgaaatgtAAAGATCAAATGTTTATTGACACTTTCAAAGATAAGAAACG
ACACTTATGTAAAATCTGTGGCAAAGGGTTCATGTATTTGCCAACTCTCC
AAAGACATTTTGCAACACATGGTGAGCTTAAACAACTTCAACAATGTGCA
GATTGTGAGAAAGAGTTTGAATATGGCGGTTTATTCAACAGTCATTTGAA
AACCAATGGATGCAAAACCCCTTACAAATGCAgtgtttgtgaaaaaaaat
tctcaacgCATGCATTGCTTTCTTTGCATTCCCTTGTACATCTTGGTGAA
AAGCGCTATAAATGTGGTGTTTGTGATAAGGAGTTCAGTAAAGCAAGTCC
ATTGCGATTACATCTTCGCGTTCATACTGGGGAAAAGCCATACAAGTGTA
AGACATGCCATAAAGACTTTCGACATCTAGATCGGTTAAAAAGGCATCTG
CGAGTTCATACTGGGGAAAAACCATACAAGTGTAATGTTTGTAGTAAAGA
ATTTAGTCAGTCAACTACTCTGAAGAACCATATTCTTTGTCACACAGATG
AGAAAGCATTTGAATGTCATGTTTGTGGAAGAAAATTCCGCAGAATAAAT
AATTTAAGAAGACATTATAGTTTACTTCacactgagaaaaaaaaggagtA
GACCCTGATTAGTAGATTCTGAAAAAAGGTGTGCTcaggtaaattaatgc
gtgtcaaTCTTTTTAGTAATTTCTCGGGACTCAATTAAACCCATCCTAGT
AttataaattttatatattGAGATAGCATtacaataaagaaaataattaa
acTAGCTAACAAAAATTTGTGAGAATTTTGCTAATGATAGCTTATGTCAC
AAGGACTTTTCCTTTTGcagagatttaaaaaaaatttgatgacgctGGCA
GAAAAAGCAGGAACTCAAATCTTTGCAATTTCTGTTGACATCAAAATCTT
GAAACAATTTTGGAATATAAATTTATGAC

Coding sequence (CDS) from alignment at sc0000401:69762..71340

>TCONS_00022011 ID=TCONS_00022011|Name=TCONS_00022011|organism=Clytia hemisphaerica|type=CDS|length=1164bp|location=Sequence derived from alignment at sc0000401:69762..71340 (Clytia hemisphaerica)
ATGCAGACACGTAAAATGGAAAGAAAATGGGAACAAATTCACAACAGCAC
ACCAGAAAATTTAATTGTTGAAACTGTCAATTTTGATTGCAAAGTTTGTG
GGAAGCAGTTCAAGAAATCTTGTACGTTACAAACTCATTTACGAATTCAT
GAAGGTGAAAACCCATATGCATATGATGTTTTCGGAAAAGGTTTTCAAGA
ATCTAACATATTTCAGCAGCAGGTTGATGTTGATGatagtttgaaacttt
ttcaatgTGGTGTATGCggaaagaaatttcaatttccaaATAATTTGATT
GTCCATGCACAATatcaccttaaaaatgaagaagttgAGAAGCCAGAGAC
CAAAAGGAAGCTTGTTTTTATCACCCCTGAAAAGTCAAACTGTAATCAGG
GAACAGAGGAAATCAAGGTACCAAATCAATTAGATTGTATTATTAACAAC
AGTGCTAACAATCCTTCAATATCACCAACAAAGCAGAATTCTAGCGATCT
GCAGatgtttgctttgaaatgtAAAGATCAAATGTTTATTGACACTTTCA
AAGATAAGAAACGACACTTATGTAAAATCTGTGGCAAAGGGTTCATGTAT
TTGCCAACTCTCCAAAGACATTTTGCAACACATGGTGAGCTTAAACAACT
TCAACAATGTGCAGATTGTGAGAAAGAGTTTGAATATGGCGGTTTATTCA
ACAGTCATTTGAAAACCAATGGATGCAAAACCCCTTACAAATGCAgtgtt
tgtgaaaaaaaattctcaacgCATGCATTGCTTTCTTTGCATTCCCTTGT
ACATCTTGGTGAAAAGCGCTATAAATGTGGTGTTTGTGATAAGGAGTTCA
GTAAAGCAAGTCCATTGCGATTACATCTTCGCGTTCATACTGGGGAAAAG
CCATACAAGTGTAAGACATGCCATAAAGACTTTCGACATCTAGATCGGTT
AAAAAGGCATCTGCGAGTTCATACTGGGGAAAAACCATACAAGTGTAATG
TTTGTAGTAAAGAATTTAGTCAGTCAACTACTCTGAAGAACCATATTCTT
TGTCACACAGATGAGAAAGCATTTGAATGTCATGTTTGTGGAAGAAAATT
CCGCAGAATAAATAATTTAAGAAGACATTATAGTTTACTTCacactgaga
aaaaaaaggagtAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012358XLOC_012358Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022011-proteinTCONS_00022011-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022011-exon-sc0000401-1491911889:69762..71340TCONS_00022011-exon-sc0000401-1491911889:69762..71340Clytia hemisphaericaexon
TCONS_00022011-exon-sc0000401-1510915933:69762..71340TCONS_00022011-exon-sc0000401-1510915933:69762..71340Clytia hemisphaericaexon
TCONS_00022011-exon-sc0000401-1575043694:69762..71340TCONS_00022011-exon-sc0000401-1575043694:69762..71340Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000401supercontigsc0000401:69762..71340 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.58151	1.28728	0.844877	0.710471	0.767466	0.720035	1.16362	1.01631	1.03889	0.228327	1.02575	0.835739	1.26734	1.015	1.66482	1.32833	1.19739	0.964234	0.199384	0.249269	1.00915	0.354148	2.3278	2.29236	0.111214	0.537072	0.56814	0.289833	1.11187	1.43492
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00022011 vs. Swiss-Prot (Human)
Match: ZN699 (Zinc finger protein 699 OS=Homo sapiens GN=ZNF699 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.748e-50
Identity = 121/363 (33.33%), Postives = 179/363 (49.31%), Query Frame = -1 
Query:  365 VETVNFDCKVCGKQFKKSCTLQTHLRIHEGENPYAYDVFGKGFQESNIFQQQVDVDDSLKLFQCGVCGKKFQFPNNLIVHAQYHLKNEEVEKPETKRKLVFITPEKSNCNQGTEEIKVPNQL-DCXXXXXXXXXXXXPTKQNSSDLQMFALKCKDQMFIDT-----FKDKKR---HLCKICGKGFMYLPTLQRHFATHGELKQLQQCADCEKEFEYGGLFNSHLKTNGCKTPYKCSVCEKKFXXXXXXXXXXXXXLGEKRYKCGVCDKEFSKASPLRLHLRVHTGEKPYKCKTCHKDFRHLDRLKRHLRVHTGEKPYKCNVCSKEFSQSTTLKNHILCHTDEKAFECHVCGRKFRRINNLRRH 1426
            +   N++CK CGK F  S +L  H RIH G+ PY     GK F  S+   +   +    K ++C  CGK F   ++LI+H + H   +  E  E  +   F    K   +  T   + P +  +C    +  +      ++++ +     L+C    ++ T      K++ R   + CK CGK F    + + H   H    Q + C +C K F        HL+T+  + PY+C  C K F + + L++H   H GEK Y+C  C K F   S LR+H+R HTGEKPY+CK C K FRH   L  H R+HTGEKP++C  C K FS  ++ + H+  HT EK +EC  CG+ F      RRH
Sbjct:  274 IGKTNYECKECGKGFSCSSSLTEHKRIHSGDKPYECKECGKAFSCSSSLSKHKRIHSGDKPYECKECGKAFSSSSHLIIHIRIHTGEKPYECKECGK--AFSESSKLTVHGRTHTGEKPYKCKECGKAYNCPSSLSIHMRKHTGEKPYECLECGKAFYLPTSLNTHVKNQSREKPYECKECGKAFSCPSSFRAHVRDHTGKIQYE-CKECGKTFSRSSSLTEHLRTHSGEKPYECKECGKAFISSSHLTVHIRTHTGEKPYECKKCGKAFIYPSALRIHMRTHTGEKPYECKECGKAFRHSSYLTVHARMHTGEKPFECLECGKAFSCPSSFRRHVRSHTGEKPYECKECGKAFVCPAYFRRH 633

HSP 2 Score: 142.124 bits (357), Expect = 4.178e-36
Identity = 116/393 (29.52%), Postives = 165/393 (41.98%), Query Frame = -1 
Query:  332 WEQIHNSTPENLIVETVNFDCKVCGKQFKKSCTLQTHLRIHEGENPYAYDVFGKGFQESNIFQQQVDVDDSLKLFQCGVCGKKFQFPNNLIVHAQYHLKNEEVEKPETKRKLVFITPEKSNCNQGTEEIKVPNQLD-------CXXXXXXXXXXXXPTKQNSSDL--------QMFALKCKDQMFIDTFKDKKRHLCKICGKGFMYLPTLQRHFATHGELKQLQQCADCEKEFEYGGLFNSHLKTNGCKTPYKCSVCEKKFXXXXXXXXXXXXXLGEKRYKCGVCDKEFSKASPLRLHLRVHTGEKPYKCKTCHKDFRHLDRLKRHLRVHTGEKPYKCNVCSKEFSQSTTLKNHILCHTDEKAFECHVCGRKFRRINNLRRHYSLLHTEKKKE 1465
            + Q+ N        E  + +C  CGK F    +L++H+R H G  PY     GK F     F++ +      K ++C  C K F   +    H + H+     E  E  +          +C+    E K  +  D       C    S ++      + +S D         + F+      + I     +K + CK CGK F     L  H  TH   K  + C +C K +      + H++ +  + PY+C  C K F     L+ H      EK Y+C  C K FS  S  R H+R HTG+  Y+CK C K F     L  HLR H+GEKPY+C  C K F  S+ L  HI  HT EK +EC  CG+ F   + LR H      EK  E
Sbjct:  177 FSQVPNLDSLKRNTEVKSCECHECGKAFVDHSSLKSHIRSHTGSKPYQCKECGKAFHFLACFKKHMKTPTEEKPYECKECTKAFSCSSFFRAHMKIHIGKTNYECKECGKGF--------SCSSSLTEHKRIHSGDKPYECKECGKAFSCSSSLSKHKRIHSGDKPYECKECGKAFSSSSHLIIHIRIHTGEKPYECKECGKAFSESSKLTVHGRTHTGEKPYK-CKECGKAYNCPSSLSIHMRKHTGEKPYECLECGKAFYLPTSLNTHVKNQSREKPYECKECGKAFSCPSSFRAHVRDHTGKIQYECKECGKTFSRSSSLTEHLRTHSGEKPYECKECGKAFISSSHLTVHIRTHTGEKPYECKKCGKAFIYPSALRIHMRTHTGEKPYE 560

HSP 3 Score: 105.531 bits (262), Expect = 6.976e-24
Identity = 67/193 (34.72%), Postives = 98/193 (50.78%), Query Frame = -1 
Query:  332 GKGFMYLPTLQRHFATHGELKQLQQCADCEKEFEYGGLFNSHLKTNGCKTPYKCSVCEKKFXXXXXXXXXXXXXLGEKRYKCGVCDKEFSKASPLRLHLRVHTGEKPYKCKTCHKDFRHLDRLKRHLRVHTGEKPYKCNVCSKEFSQSTTLKNHILCHTDEKAFECHVCGRKFRRINNLRRHYSLLHTEKKKE 910
            G+ F  +P L      + E+K  + C +C K F       SH++++    PY+C  C K F   A    H      EK Y+C  C K FS +S  R H+++H G+  Y+CK C K F     L  H R+H+G+KPY+C  C K FS S++L  H   H+ +K +EC  CG+ F   ++L  H  +   EK  E
Sbjct:  174 GQTFSQVPNLDS-LKRNTEVKSCE-CHECGKAFVDHSSLKSHIRSHTGSKPYQCKECGKAFHFLACFKKHMKTPTEEKPYECKECTKAFSCSSFFRAHMKIHIGKTNYECKECGKGFSCSSSLTEHKRIHSGDKPYECKECGKAFSCSSSLSKHKRIHSGDKPYECKECGKAFSSSSHLIIHIRIHTGEKPYE 364
The following BLAST results are available for this feature:
BLAST of TCONS_00022011 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN6991.748e-5033.33Zinc finger protein 699 OS=Homo sapiens GN=ZNF699 ... [more]
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