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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021729 ID=TCONS_00021729|Name=TCONS_00021729|organism=Clytia hemisphaerica|type=transcript|length=1459bp
CAATAGTCGATCCTGTCAGCTTCACATCTTGTAAATTAGTAGATTTGGGA
CCCTGTTAGATATCTTCAGaacctaaaaaagggaccctgaatagcggcac
gtccccgtacccaattttgccaaaGTGCCTCCCCCGGGGATAAAGACACa
gtcacaaaaataaaaactgctTCGTTAACAAGATTGACCACCCTCCTTTT
AAAACCTTAAAGTACCTACCTTAGAGATTAGCTAGCTATAGGGTATAATT
CTCTACCCAATATTTGAATattgattacaaaaatatttttacatacTTAA
CTATAGAAAATCATTCATATtcataaaataatttaaaatctaTGTACATG
CCTTGTGGAAACACGTTGTTATGAGAACGTCAAAAGGTTTTGAAGCCTGT
TGGCGTTCTCAGTCTTTATCGTTTTCACTGTAGACAGATTTCACAATCCA
CGATTGGATAGCTTGCTATACCCACGATCACTTTTTTCAGTGATCATTTT
ATCGGTGATTTTTAATCATTCGTTTAACATCCTTACTGACTTCTTTTAAA
TCATCTGGCTTCTTTGAGAAGATATCTTTCACATTCACATCAACATCAAC
TCTTGAACATATATATTTGGCCATTTCCTCAAAACCAAGATCGATAGCCA
TATGCAGTAATGTTGAACCATGGCTCGTTCTATCCTCATTAAGAAGCTCT
GGTTGATTATCTAAGAGAACTTGTAAAACTGGTATACAGTCTACAGTAAC
TGCAATTTGGGCTGAATTTTGACCATCATGGTCTTTAACATTTGGCTTGC
ACTGTGTGTATTGTCCGGAAAACTGTATAAGCCATAAGACGAAATCAGGG
CGTTTGTAACGGGTGGCATGGTGTAAAAGGGTGTCCCCGTTTTCATCGAG
TAGCTCAACCAGACGGTATGATTGACTTGTATATTGCATGAAATTGATTA
TATCATTTTCTTGGATTAACATTAGAAGATCTAGAATTTGGAAGTTTGAG
AAACAGAGAAATTCATATTGGAATTTTTTTGGAATGTGTTTTATTCACTG
TTTATAGTCGAGATTCTATTTCAGATCGATAAGCCTACCTTAAAGGGAAT
ACTTAGTCAGAtaaaacttaaaacttttcATTAACGAAAACTAGCCCAAT
GACTTGCAGTTAATTACTTACCTAAAAATGACCTAATAATTTCCCAGATT
CAGATTTCCCTTTAAGGTTCGAGGACATATTTTAGGATAGCACGCACCAT
TGGTTGAATAAAATCCAACTTTATTTCCATACGTAGGTTATGGATGTCAT
ATGGATGTTGTTTGGACGTTCTATGTGGATACTTACTTACCTTGGAAATT
GACAAGTCTCAAACGTCCATCACTCGTAGTCACCATGCTTTCACTAAAAT
TCAAATCCATACAAATGAAAGATATGAAAATTGATCTAACAGTACACGTT
TGGAGGAAA Run BLAST on NCBI transcript from alignment at sc0000393:181734..183313- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021729 ID=TCONS_00021729|Name=TCONS_00021729|organism=Clytia hemisphaerica|type=transcript|length=1580bp|location=Sequence derived from alignment at sc0000393:181734..183313- (Clytia hemisphaerica)
CAATAGTCGATCCTGTCAGCTTCACATCTTGTAAATTAGTAGATTTGGGA
CCCTGTTAGATATCTTCAGAACCTAAAAAAGGGACCCTGAATAGCGGCAC
GTCCCCGTACCCAATTTTGCCAAAGTGCCTCCCCCGGGGATAAAGACACA
GTCACAAAAATAAAAACTGCTTCGTTAACAAGATTGACCACCCTCCTTTT
AAAACCTTAAAGTACCTACCTTAGAGATTAGCTAGCTATAGGGTATAATT
CTCTACCCAATATTTGAATATTGATTACAAAAATATTTTTACATACTTAA
CTATAGAAAATCATTCATATTCATAAAATAATTTAAAATCTATGTACATG
CCTTGTGGAAACACGTTGTTATGAGAACGTCAAAAGGTTTTGAAGCCTGT
TGACGTTCTCAGTCTTTATCGTAATCACTGTAGACAGATTTCACAATCCA
CGATTGGATAAAATAGCTTGTTCTACCCACCATCACTTTTTTCAGTGATA
NCAAAAGGTTTTGAAGCCTGTTGGCGTTCTCAGTCTTTATCGTTTTCACT
GTAGACAGATTTCACAATCCACGATTGGATAGCTTGCTATACCCACGATC
ACTTTTTTCAGTGATCATTTTATCGGTGATTTTTAATCATTCGTTTAACA
TCCTTACTGACTTCTTTTAAATCATCTGGCTTCTTTGAGAAGATATCTTT
CACATTCACATCAACATCAACTCTTGAACATATATATTTGGCCATTTCCT
CAAAACCAAGATCGATAGCCATATGCAGTAATGTTGAACCATGGCTCGTT
CTATCCTCATTAAGAAGCTCTGGTTGATTATCTAAGAGAACTTGTAAAAC
TGGTATACAGTCTACAGTAACTGCAATTTGGGCTGAATTTTGACCATCAT
GGTCTTTAACATTTGGCTTGCACTGTGTGTATTGTCCGGAAAACTGTATA
AGCCATAAGACGAAATCAGGGCGTTTGTAACGGGTGGCATGGTGTAAAAG
GGTGTCCCCGTTTTCATCGAGTAGCTCAACCAGACGGTATGATTGACTTG
TATATTGCATGAAATTGATTATATCATTTTCTTGGATTAACATTAGAAGA
TCTAGAATTTGGAAGTTTGAGAAACAGAGAAATTCATATTGGAATTTTTT
TGGAATGTGTTTTATTCACTGTTTATAGTCGAGATTCTATTTCAGATCGA
TAAGCCTACCTTAAAGGGAATACTTAGTCAGATAAAACTTAAAACTTTTC
ATTAACGAAAACTAGCCCAATGACTTGCAGTTAATTACTTACCTAAAAAT
GACCTAATAATTTCCCAGATTCAGATTTCCCTTTAAGGTTCGAGGACATA
TTTTAGGATAGCACGCACCATTGGTTGAATAAAATCCAACTTTATTTCCA
TACGTAGGTTATGGATGTCATATGGATGTTGTTTGGACGTTCTATGTGGA
TACTTACTTACCTTGGAAATTGACAAGTCTCAAACGTCCATCACTCGTAG
TCACCATGCTTTCACTAAAATTCAAATCCATACAAATGAAAGATATGAAA
ATTGATCTAACAGTACACGTTTGGAGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021729-exon-sc0000393-1575043694:182928..183313 | TCONS_00021729-exon-sc0000393-1575043694:182928..183313 | Clytia hemisphaerica | exon |
| TCONS_00021729-exon-sc0000393-1575043694:181734..182806 | TCONS_00021729-exon-sc0000393-1575043694:181734..182806 | Clytia hemisphaerica | exon |
| TCONS_00021729-exon-sc0000393-1510915933:182928..183313 | TCONS_00021729-exon-sc0000393-1510915933:182928..183313 | Clytia hemisphaerica | exon |
| TCONS_00021729-exon-sc0000393-1510915933:181734..182806 | TCONS_00021729-exon-sc0000393-1510915933:181734..182806 | Clytia hemisphaerica | exon |
| TCONS_00021729-exon-sc0000393-1491911889:182928..183313 | TCONS_00021729-exon-sc0000393-1491911889:182928..183313 | Clytia hemisphaerica | exon |
| TCONS_00021729-exon-sc0000393-1491911889:181734..182806 | TCONS_00021729-exon-sc0000393-1491911889:181734..182806 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000393 | supercontig | sc0000393:181734..183313 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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