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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021031 ID=TCONS_00021031|Name=TCONS_00021031|organism=Clytia hemisphaerica|type=transcript|length=2899bpRun BLAST on NCBI transcript from alignment at sc0000377:90340..117324+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021031 ID=TCONS_00021031|Name=TCONS_00021031|organism=Clytia hemisphaerica|type=transcript|length=26985bp|location=Sequence derived from alignment at sc0000377:90340..117324+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00021031 vs. Swiss-Prot (Human)
Match: RAB26 (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3) HSP 1 Score: 280.411 bits (716), Expect = 2.865e-86 Identity = 134/206 (65.05%), Postives = 164/206 (79.61%), Query Frame = 3
Query: 174 RPSVRNGNPF-DYAFKVMLIGDSGVGKTCVLIRFKDGAFLSGSFISTVGIDFRNKTINVDGKKVKLQIWDTAGQERFRSITHAYYRDAHALLLLYDVGSRKSFENTRAWLSEIREYAPNDAVIMLLGNKCDLAKERQVKREEGEKLAQDYNVPFLETSAKSGLNVDLAFEAASRELMNIEARGKEHNGKFNIGQYVSEKEQKPGCC 788
RPS+ G F D AFKVML+GDSGVGKTC+L+RFKDGAFL+G+FISTVGIDFRNK ++VDG KVKLQ+WDTAGQERFRS+THAYYRDAHALLLLYDV ++ SF+N +AWL+EI EYA +D +MLLGNK D A ER VKRE+GEKLA++Y +PF+ETSAK+GLNVDLAF A ++EL + +F + YV + + CC
Sbjct: 50 RPSLGGGVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQRSMKAPSEP-RFRLHDYVKREGRGASCC 254 The following BLAST results are available for this feature:
BLAST of TCONS_00021031 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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