TCONS_00021029 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021029
Unique NameTCONS_00021029
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021029 ID=TCONS_00021029|Name=TCONS_00021029|organism=Clytia hemisphaerica|type=transcript|length=287bp
aCTGCTGTTATGTctaaaattttttgtaaaatatgaaTTAGAGAAGCTGA
GCATATCTCAGAAGCATAGTATGAAATATGTGTATGGAATAAATATTGTA
ATTAAAACGGGCctagaactaaaaaaaaaaaaacattaattcGGAAATAA
AATTATCAAGATAAAGTCAAGTAGAGGTGAGGttcaaaaatttcctgaaa
aaagaaCGGTTACATTGATACTTAGTAGAGATGAATTTATCAAAGCTTAA
CAATTAATAACCAGATTGGTTTGTTCAATACAAAAGC
Run BLAST on NCBI

transcript from alignment at sc0000376:305762..306048

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021029 ID=TCONS_00021029|Name=TCONS_00021029|organism=Clytia hemisphaerica|type=transcript|length=287bp|location=Sequence derived from alignment at sc0000376:305762..306048 (Clytia hemisphaerica)
GCTTTTGTATTGAACAAACCAATCTGGTTATTAATTGTTAAGCTTTGATA
AATTCATCTCTACTAAGTATCAATGTAACCGttcttttttcaggaaattt
ttgaaCCTCACCTCTACTTGACTTTATCTTGATAATTTTATTTCCgaatt
aatgtttttttttttttagttctagGCCCGTTTTAATTACAATATTTATT
CCATACACATATTTCATACTATGCTTCTGAGATATGCTCAGCTTCTCTAA
ttcatattttacaaaaaattttagACATAACAGCAGt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011800XLOC_011800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021029-exon-sc0000376-1491911889:305762..306048TCONS_00021029-exon-sc0000376-1491911889:305762..306048Clytia hemisphaericaexon
TCONS_00021029-exon-sc0000376-1510915933:305762..306048TCONS_00021029-exon-sc0000376-1510915933:305762..306048Clytia hemisphaericaexon
TCONS_00021029-exon-sc0000376-1575043694:305762..306048TCONS_00021029-exon-sc0000376-1575043694:305762..306048Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:305762..306048 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.00219	1.22008	0	1.74476	0	2.66839	3.7774	0	1.20509	1.20341	0	1.28434	0.551316	1.01876	3.48067	0.480873	0.503199	1.74948	1.92001	1.03734	0.471548	0	0.866921	0	0	0.502089	1.0231
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top