TCONS_00020926 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020926
Unique NameTCONS_00020926
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length614

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020926 ID=TCONS_00020926|Name=TCONS_00020926|organism=Clytia hemisphaerica|type=transcript|length=614bp
ACGTTATTGTCAGATGTTAGAAAAACGCCACTAAATCAAGAGGCACCCCT
CACTACTCTTCCAACTTCTGTATCATGTGTTGTATCAAGTTTTCTGTGCT
TGATCACTTTTGCTGGtatgcaactcttcaaaacaccATTAGGATCTGGT
AAAATGATGACCATCCTTGGTGGTTTTTTGGGATCACAATTATTTGTATT
TGCACTGACtGCTATCAATAATTTCGAAGTGATGAATATGGGACGAAATT
TCCAAGCTAAACTTTTCCCTGAAgTCATTCTAGCTATGTTCATTGCTTTA
ATTGCATCTGGTATGGTTCACCGCGTCTGTGTCACTGTTTGTTTCATCTT
CTCATGTATCGCCCTTTACTACTTAAACAATATGTCCACCTCAAGCCAAC
CCGCCCCTGTTGCCCCCACCACAAAGAAAGGAAAGAAACATAATTAATTA
CCAGTGTCCGTTTGATGGATTGTAATTAGTTATTTTGTCATTTATTTTGT
AATAGCTTTCTATTTCACTTAGTTGTTTTCTTTTGGTAATAAATGGGACA
TTTTcataaacaaaaagttttagaTTGTACGACTGTTTTCCATGAAATAA
CTTTAGATAAGAAC
Run BLAST on NCBI

protein sequence of TCONS_00020926-protein

>TCONS_00020926-protein ID=TCONS_00020926-protein|Name=TCONS_00020926-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
TLLSDVRKTPLNQEAPLTTLPTSVSCVVSSFLCLITFAGMQLFKTPLGSG
KMMTILGGFLGSQLFVFALTAINNFEVMNMGRNFQAKLFPEVILAMFIAL
IASGMVHRVCVTVCFIFSCIALYYLNNMSTSSQPAPVAPTTKKGKKHN
Run BLAST on NCBI

transcript from alignment at sc0000374:5221..8233+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020926 ID=TCONS_00020926|Name=TCONS_00020926|organism=Clytia hemisphaerica|type=transcript|length=3013bp|location=Sequence derived from alignment at sc0000374:5221..8233+ (Clytia hemisphaerica)
ACGTTATTGTCAGATGTTAGAAAAACGCCACTAAATCAAGAGGCACCCCT
CAGTAAGAGAATAATTTTTGCTGCTTTTGCTGTGATAGACCTTTTCCTAT
TATataatgttgaataattaaaacaatttttaccTAATCGTTACGCATAA
ACAATATCACATTAAAACTTGGCGGCCATTTGATGGCAGAAGTTTAAACC
CGCTTGTATTGAAACTTGTTGAATTACAGTATACCTACTTTCAGAAATGG
AAAAGACGGGCTCTATCAGTGTGTATAGAATTATAAGGGATGTCAAAGAA
CacaaattgttttcattttatcttcTTCTTTCAGCTACTCTTCCAACTTC
TGTATCATGTGTTGTATCAAGTTTTCTGTGCTTGATCACTTTTGCTGGta
tgcaactcttcaaaacaccATTAGGATCTGGTAAAATGATGACCATCCTT
GGTGGTTTTTTGGGATCACAATTATTTGTATTTGCACTGACtgtatcttt
tcaaaaaaatatcttaaatttGAGCTCAAATGTATAGTTTGACCTACAGT
AAGACCTTAAGTTATGTATCTTTAATGAGAGAAaactatttttagatttt
agttcGACCTACATTTAACTAAAGAGCTCTGTtgtttgaaaatcataaaa
caAAATGTTTCACTAGGATAGAGTTCAGTAGAATCAAAGGGAAATACTTC
TACTTGACTctgagaccatgttcacacgttactggtTCGTTTCGCTCCGC
tgtgattttcgttacggatcgagattGTTCATATTAGTTTCGAAACGTTT
CGGAGCAACAAAACGGAGCAGTTCTGTTCCAATAAAAAAGTGGAgtgaaa
ccgtttcgatctgttttgctgtgtaacgtcttcttttttgacgtttcgaa
ttttgacgttcacacttgttttcggaaccgtttcgtttcggagcgaaacg
gaaccgtaaacgtctgaacatggtctgagATTTTCCGAATAcacaataat
tatttttttgtaagtAATTAGATTATCGCTAGAGCTGAGCCTCAGATTGT
TCTtgaatttgttcttaggtttcgGCCAATCTCCaataaaagcgtgtatt
ttgTGATTTAGATATTCTTTGAAGTTATTTATTTCTTGTTATTACTACTC
TAAATATTAAGATAACTTTTTCTTAACGAAATTACAATGATAATTAACAA
CAGGCTATCAATAATTTCGAAGTGATGAATATGGGACGAAATTTCCAAGC
TAAACTTTTCCCTGAAggtaagataattttttttattcaagctATAATAG
CCCTGAAAGTCTGCAGGGTCGGCACCAGTGAAACTGCATGTCTACTACAC
CTTTAAGAGCTTGTAACAGGATTTcataatcaaaatttaaaaagtccgAG
TGGGAGTGTAATACTCGATATaaacaaaatgacgtcatatgtTTTGTACA
AAACATGTAGATCAAAGTGACGTCAGAAGAATTCGGATTCAACGGTATAG
accaatattttatttatttatcaaacCAAATTTACTCTAATTTATTGCCC
CTATTGTAAGTATATCTGAAATATAATATTcacggaaaaaaaaaaaatag
accaatgaagtataagcttgaagggctagaatcgaatctgcATGGTAGAA
TTAGAAGCCAACAAgtcctaccaaagttgcacgGCCTAGCGTGGCCCGCC
TGCATTTTACACAAATGGCAGATTGAAACTTAAGACTTACTGttaaattt
cgaaaataatATCACTCGAAAAGAAAAGAATTGCTAGATTGAAttcgtcg
tcaaaaatacggcacatattttaaggcttcattttttcttgcctgagaaa
ggttagagattcgatCCTAGCCCTTTGGGCTCATACTTCATTGGTAATAG
ACCGGGTATAGCGTCAAACTTTCTGCAATGCAATAAGATTAGTATTAATT
TTTGTCTTTGATTCTCTCTTTAGTCATTCTAGCTATGTTCATTGCTTTAA
TTGCATCTGGTATGGTTCACCGCGTCTGTGTCACTGTTTGGTGGgtttca
acttttttctttcatttttggaatttgccAAAGCATATCTTGGGGTAGCT
TTCTAAACGTTTAAAAACCATACTTTGATATTATGACATCTTGTTGTCAT
TATAAACCGTCCCTGGAGGTTTAAACCCAGCGAATTTTCCTCCGTTGTCG
GGCTACGAAGAACAAAATAATCAAACCAGGATCTGtttaataattaatta
attaataataAGTTGCGAACTgttaaaacacaaagaattaaccTCGGAAT
GGGCTTTTTCTGTTAACAAGGAACTagaatatcaaatttttgtcaTGATT
CTCATGGCTCATTTACAAAAATTAGGattaagtttcaaaattcaagcaaA
GATTGAGTTTCTGCCACTGTTATCCGATTGCAGAAAAGGCCTGGAAATTT
CTCTGGACCCAAGCTTTACTAGTTATATTTTTCGAGTAAATTtcctttaa
atcaagttattaaAGTCTGAAAATAAGCTAAGGTGTTAAAATTTCACGtc
ctaaaattagaaaaaaatctctaaaaggTTGACACTCAATCAacggaaaa
aaaaactttttgcacgGAATAGCGAAAAACCTTTTCGCCTCCAATTAGGG
GATAACCCTGATGGTTTCCGCCAATTAAAGATTCCACTATATTCTGTTTT
AGTTTACGtctttttcaaatattctttCTTCTATTTTCAGTTTCATCTTC
TCATGTATCGCCCTTTACTACTTAAACAATATGTCCACCTCAAGCCAACC
CGCCCCTGTTGCCCCCACCACAAAGAAAGGAAAGAAACATAATTAATTAC
CAGTGTCCGTTTGATGGATTGTAATTAGTTATTTTGTCATTTATTTTGTA
ATAGCTTTCTATTTCACTTAGTTGTTTTCTTTTGGTAATAAATGGGACAT
TTTcataaacaaaaagttttagaTTGTACGACTGTTTTCCATGAAATAAC
TTTAGATAAGAAC

Coding sequence (CDS) from alignment at sc0000374:5221..8233+

>TCONS_00020926 ID=TCONS_00020926|Name=TCONS_00020926|organism=Clytia hemisphaerica|type=CDS|length=2235bp|location=Sequence derived from alignment at sc0000374:5221..8233+ (Clytia hemisphaerica)
ACGTTATTGTCAGATGTTAGAAAAACGCCACTAAATCAAGAGGCACCCCT
CACTACTCTTCCAACTTCTGTATCATGTGTTGTATCAAGTTTTCTGTGCT
TGATCACTTTTGCTGGtatgcaactcttcaaaacaccATTAGGATCTGGT
AAAATGATGACCATCCTTGGTGGTTTTTTGGGATCACAATTATTTGTATT
TGCACTGACtGCTATCAATAATTTCGAAGTGATGAATATGGGACGAAATT
TCCAAGCTAAACTTTTCCCTGAAgTCATTCTAGCTATGTTCATTGCTTTA
ATTGCATCTGGTATGGTTCACCGCGTCTGTGTCACTGTTTGTTTCATCTT
CTCATGTATCGCCCTTTACTACTTAAACAATATGTCCACCTCAAGCCAAC
CCGCCCCTGTTGCCCCCACCACAAAGAAAGGAAAGAAACATAATTAAACG
TTATTGTCAGATGTTAGAAAAACGCCACTAAATCAAGAGGCACCCCTCAC
TACTCTTCCAACTTCTGTATCATGTGTTGTATCAAGTTTTCTGTGCTTGA
TCACTTTTGCTGGtatgcaactcttcaaaacaccATTAGGATCTGGTAAA
ATGATGACCATCCTTGGTGGTTTTTTGGGATCACAATTATTTGTATTTGC
ACTGACtGCTATCAATAATTTCGAAGTGATGAATATGGGACGAAATTTCC
AAGCTAAACTTTTCCCTGAAgTCATTCTAGCTATGTTCATTGCTTTAATT
GCATCTGGTATGGTTCACCGCGTCTGTGTCACTGTTTGTTTCATCTTCTC
ATGTATCGCCCTTTACTACTTAAACAATATGTCCACCTCAAGCCAACCCG
CCCCTGTTGCCCCCACCACAAAGAAAGGAAAGAAACATAATTAAACGTTA
TTGTCAGATGTTAGAAAAACGCCACTAAATCAAGAGGCACCCCTCACTAC
TCTTCCAACTTCTGTATCATGTGTTGTATCAAGTTTTCTGTGCTTGATCA
CTTTTGCTGGtatgcaactcttcaaaacaccATTAGGATCTGGTAAAATG
ATGACCATCCTTGGTGGTTTTTTGGGATCACAATTATTTGTATTTGCACT
GACtGCTATCAATAATTTCGAAGTGATGAATATGGGACGAAATTTCCAAG
CTAAACTTTTCCCTGAAgTCATTCTAGCTATGTTCATTGCTTTAATTGCA
TCTGGTATGGTTCACCGCGTCTGTGTCACTGTTTGTTTCATCTTCTCATG
TATCGCCCTTTACTACTTAAACAATATGTCCACCTCAAGCCAACCCGCCC
CTGTTGCCCCCACCACAAAGAAAGGAAAGAAACATAATTAAACGTTATTG
TCAGATGTTAGAAAAACGCCACTAAATCAAGAGGCACCCCTCACTACTCT
TCCAACTTCTGTATCATGTGTTGTATCAAGTTTTCTGTGCTTGATCACTT
TTGCTGGtatgcaactcttcaaaacaccATTAGGATCTGGTAAAATGATG
ACCATCCTTGGTGGTTTTTTGGGATCACAATTATTTGTATTTGCACTGAC
tGCTATCAATAATTTCGAAGTGATGAATATGGGACGAAATTTCCAAGCTA
AACTTTTCCCTGAAgTCATTCTAGCTATGTTCATTGCTTTAATTGCATCT
GGTATGGTTCACCGCGTCTGTGTCACTGTTTGTTTCATCTTCTCATGTAT
CGCCCTTTACTACTTAAACAATATGTCCACCTCAAGCCAACCCGCCCCTG
TTGCCCCCACCACAAAGAAAGGAAAGAAACATAATTAAACGTTATTGTCA
GATGTTAGAAAAACGCCACTAAATCAAGAGGCACCCCTCACTACTCTTCC
AACTTCTGTATCATGTGTTGTATCAAGTTTTCTGTGCTTGATCACTTTTG
CTGGtatgcaactcttcaaaacaccATTAGGATCTGGTAAAATGATGACC
ATCCTTGGTGGTTTTTTGGGATCACAATTATTTGTATTTGCACTGACtGC
TATCAATAATTTCGAAGTGATGAATATGGGACGAAATTTCCAAGCTAAAC
TTTTCCCTGAAgTCATTCTAGCTATGTTCATTGCTTTAATTGCATCTGGT
ATGGTTCACCGCGTCTGTGTCACTGTTTGTTTCATCTTCTCATGTATCGC
CCTTTACTACTTAAACAATATGTCCACCTCAAGCCAACCCGCCCCTGTTG
CCCCCACCACAAAGAAAGGAAAGAAACATAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011739XLOC_011739Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020926-proteinTCONS_00020926-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020926-exon-sc0000374-1491911889:5221..5272TCONS_00020926-exon-sc0000374-1491911889:5221..5272Clytia hemisphaericaexon
TCONS_00020926-exon-sc0000374-1510915933:5221..5272TCONS_00020926-exon-sc0000374-1510915933:5221..5272Clytia hemisphaericaexon
TCONS_00020926-exon-sc0000374-1575043694:5221..5272TCONS_00020926-exon-sc0000374-1575043694:5221..5272Clytia hemisphaericaexon
TCONS_00020926-exon-sc0000374-1491911889:5555..5712TCONS_00020926-exon-sc0000374-1491911889:5555..5712Clytia hemisphaericaexon
TCONS_00020926-exon-sc0000374-1510915933:5555..5712TCONS_00020926-exon-sc0000374-1510915933:5555..5712Clytia hemisphaericaexon
TCONS_00020926-exon-sc0000374-1575043694:5555..5712TCONS_00020926-exon-sc0000374-1575043694:5555..5712Clytia hemisphaericaexon
TCONS_00020926-exon-sc0000374-1491911889:6424..6487TCONS_00020926-exon-sc0000374-1491911889:6424..6487Clytia hemisphaericaexon
TCONS_00020926-exon-sc0000374-1510915933:6424..6487TCONS_00020926-exon-sc0000374-1510915933:6424..6487Clytia hemisphaericaexon
TCONS_00020926-exon-sc0000374-1575043694:6424..6487TCONS_00020926-exon-sc0000374-1575043694:6424..6487Clytia hemisphaericaexon
TCONS_00020926-exon-sc0000374-1491911889:7194..7260TCONS_00020926-exon-sc0000374-1491911889:7194..7260Clytia hemisphaericaexon
TCONS_00020926-exon-sc0000374-1510915933:7194..7260TCONS_00020926-exon-sc0000374-1510915933:7194..7260Clytia hemisphaericaexon
TCONS_00020926-exon-sc0000374-1575043694:7194..7260TCONS_00020926-exon-sc0000374-1575043694:7194..7260Clytia hemisphaericaexon
TCONS_00020926-exon-sc0000374-1491911889:7961..8233TCONS_00020926-exon-sc0000374-1491911889:7961..8233Clytia hemisphaericaexon
TCONS_00020926-exon-sc0000374-1510915933:7961..8233TCONS_00020926-exon-sc0000374-1510915933:7961..8233Clytia hemisphaericaexon
TCONS_00020926-exon-sc0000374-1575043694:7961..8233TCONS_00020926-exon-sc0000374-1575043694:7961..8233Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000374supercontigsc0000374:5221..8233 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
280.326	286.645	298.273	266.649	92.0876	75.1068	206.605	207.842	141.344	160.772	141.189	152.45	130.566	125.534	167.93	185.065	155.263	163.95	100.872	117.436	116.488	109.916	168.202	174.084	97.7663	116.669	131.312	133.608	233.956	195.647
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018614KRTCAP2
Blast
[Close]
BLAST of TCONS_00020926 vs. Swiss-Prot (Human)
Match: KTAP2 (Keratinocyte-associated protein 2 OS=Homo sapiens GN=KRTCAP2 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.980e-33
Identity = 63/117 (53.85%), Postives = 82/117 (70.09%), Query Frame = 1 
Query:  109 FAGMQLFKTPLGSGKMMTILGGFLGSQLFVFALTAINNFEVMNMGRNFQAKLFPEVILAMFIALIASGMVHRVCVTVCFIFSCIALYYLNNMSTS--SQPAPV---APTTKKGKKHN 444
            FAGMQ++   L S + +TI GG LGS LFVF+LTA NN E +  G+ FQAK+FPE++L + +AL ASG++HRVCVT CFIFS + LYY+N +S++     APV   A  T K KK N
Sbjct:   20 FAGMQMYSRQLASTEWLTIQGGLLGSGLFVFSLTAFNNLENLVFGKGFQAKIFPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTLYQAAAPVLTPAKVTGKSKKRN 136
The following BLAST results are available for this feature:
BLAST of TCONS_00020926 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KTAP23.980e-3353.85Keratinocyte-associated protein 2 OS=Homo sapiens ... [more]
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