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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020416 ID=TCONS_00020416|Name=TCONS_00020416|organism=Clytia hemisphaerica|type=transcript|length=1422bp
GGACATAGTAGATGCTATATAAAGAAATCCTAGGGCATATCAAATGGGAA
AGTATTCCTTGTTTGACTGCTGGACAAGACTATCAAGACACTTATGCATC
TGTAGACATCACAAAAGATTTCCGCTTTTCGTTTCGAAGAGAGAGACTTG
TATTAAGGTCGTGTTTATCTTGTCAACGCATCATTCAAAAGATTGCACTC
ACGAAGTAAACAGCAAGAATTCAAAGAACTTAATCAACAAACGATACAAA
CTTCAACAAAGATGAATCAATTACAACTCTTATGTCTGGCAATCCTCTGC
ACCGTCACATTTGCACGATATGCACCAACTTACCAAAGATGTGAACCTGT
ACGTGTTGAAATGTGTAGAAACCTGGATCCAAAGAATTGGGTTCGAACCT
CGTTCCCAAATTTTATGAACCATTCATCATCCATTGTTGCTGAACGAGAA
CTTAAACAATATTATGACATCATTGATTCCAACTGCTCACCATACCTGAC
AACCTTCTTATGCTCTTTATATATGCCGATCTGCAAAGCTGGTATTGGTC
GTATCCCACCTTGCAAATCGTTATGTCAAGCAGCACGCTCTGGATGTGAA
CCTTTGTTGAATTCAGCTCACATCAGATGGCCTTATTCCATGAATTGTGA
CCAATTCCCAGACAGTGGACAACTTTGCATTGATTTACCAGAAACAGCAC
CAACACCAAAGGCTCTGAATGAAGTTGAAGCTAATCAAATCCCTTCTAAA
AGAACAGTCATCAAGAAAGATAAATTACCATCAATCGCAAAAAAGGATCT
GAAACCATTAGAAGAAGTCGTTCTAGAATGTCCACCTGATAAACAAATCA
TGGTCCGTAAAATTCGTCATTTTCCAGAACGTAATACTGATTGCTGCCCT
GTAGACTCTAAAGAAAAGATCTCAAGAGGATGCAATGGTAAACAAAAATG
TGAAATCATCTTAGATGAAAACGTCATCGGACATGGTTGCGTAACATCGA
TGGAGAAAACTTCCGTCAAATATAAATGTGTCGGACTTCAGCATAACGTC
AAGACGCGTAAATCAATTGGGTGTcggaaaaacaataaaaatggtATATA
GAAACATATTTCAATAGACTTATAATTGACTATGAGACATAcccaaaaat
gaaagaattattCCGACTGCAGCGAGACCAACGCGATGGTTTTCACACTT
TATTTATACACTAAACatagattttattgaaaaaatttaatgtAAATTTA
AGTTATAAAgagttaaaaaattttaacctgtttttctttctgttattagt
ttttttatcatttatcttaattttaaaaacattgtaaatattttatatTA
AAAGAttaattagaaaaataaatattataagtaacaacaaagaaaattCC
AAAATACAAGATTGTTGCTTCG Run BLAST on NCBI transcript from alignment at sc0000356:264585..271440+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020416 ID=TCONS_00020416|Name=TCONS_00020416|organism=Clytia hemisphaerica|type=transcript|length=6856bp|location=Sequence derived from alignment at sc0000356:264585..271440+ (Clytia hemisphaerica)
GGACATAGTAGATGCTATATAAAGAAATCCTAGGGCATATCAAATGGGAA
AGTATTCCTTGTTTGACTGCTGGACAAGACTATCAAGACACTTATGCATC
TGTAGACATCACAAAAGATTTCCGCTTTTCGTTTCGAAGAGAGAGACTTG
TATTAAGGTAAGAGCGTGTTCTTTTAATTTATGTAAACAGAGGCGTCTAT
TATAATTGATAATATTTCAGAATCGTAATGGTGCTTTGCTACTCTAAAGT
TCTCTCTTGTTTATGTTGGAGCCTTGCTTTAGCTGATGAAATCAAATGCC
ATAGACTAGTGTCTTAGTTCTCTTATTATCCAGACCACAAAGAGAAGGGG
GTGACTAGACGCTACCCTACTTTTCAATCATATGCTAATTTTCCAGCACT
TTCTCAATGCATTGTATTTATATTATGAAATTGGAATAAAAATTGGAATG
ACTTACAAttggtttttccagaaaaaattcaatattttggggtggaggat
ataacattttttggaaatttatccCCCGGttattgtgacttttgaccccc
cccctaTTCCGTCTAACCTGCGTCTAACCCCCcgaacaagcatcagttga
ccccttggacattcaaaattatctcaaacagagcaaaactACCCCCGAGC
AGAGCAAGTTTATCCCccagacaaggcaaatttttcaGACCTTCACTGCC
CCCTGACACTATATCCTTTACCCTCTCATGTACGAACAATTTCTTGAAGA
GACCAATCCTGTTTTTTGTGATATTTTGGGTGAATTTTGAACGCACAAGC
TTCGAGAACAAACCTAGTTTAAACCATCAGATCGAATTCCAAAAATCAAT
ACAGTAATCTTGTTGTCATGGCAACCCTTTTACCAGATTGCAGAAAAAAT
AATAAGGCTTTTTAATGGGTACTTCTAAAAATTGTCATTTGCATTTCCGG
CcaatttcaaaagtttgaatTGAAATTACTGACATCTAGCTTTTTCAGTG
TTTAATACTGTATACTGAGGGTGATTTTCATTAAATAGCTTGCAACCAAA
AGTCAATTATTTTCACCAAGAATAATTTCATCTGAGGTCATTATTTTTAT
CTACTTTGagaagaaatttgaagaatgtCTTCTTTTGCAAAAGCTATTTA
CAGGTCTACTAAAATGTTTTGCAGAATAGTTTTTTATGTCATGCCAAAAT
ATCGttacatagatttataaagcccgaagggctatgTAGATGTcatgctt
tggctgaaaagtgtgctgtggttaggtaggaaatcccaCCTAGGTCATGT
AACATTACAATTGAATTTCAGcgtttgaccaatcagaagcttcacgggtt
tttgaaaataatagcGATGCGATATCATATtcttttgcctgcgatggctt
aaagcacgacatctagcccttcgagctttataaatctatgtatCGTTATC
CCTGTTTATCTAACAAATAAATTCACTAGCATAAGGGAAAAGTATAATGT
CTTGCAAAAAGTTAGAACTTtgtagctggcacacaacgtcgtttcaacgt
tcatctaacgttatatagatgttgtgaacgttagataaacgttgaaaaaa
cgttgcgtgccagctgggttgtaGCCACGTttggtgattttattttataG
AAGCATTCTTCAAGTCAAGGGAATGAGCACATTATGTAGGAACTTTTTTC
ATACGTATTGATTCTAGATTTTAACTAAATTGATAGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTCTCTTGTTTA
TGTTGGAGCCTTGCTTTAGCTGATGAAATCAAATGCCATAGACTAGTGTC
TTAGTTCTCTTATTATCCAGACCACAAAGAGAAGGGGGTGACTAGACGCT
ACCCTACTTTTCAATCATATGCTAATTTTCCAGCACTTTCTCAATGCATT
GAATTTATATTATGAAATTGGAATAAAAATTGGAATGACTTACAAttggt
ttttccagaaaaaattcaatattttggggtggaggatataacatttcgTG
GAAATTTATCCCCCGGtaattgtgacttttgaccccctgCCCATTCCGTC
TAACCTGCGTCTAACCCCCcgaacaagcatcagttgaccccttggacatt
caaaattatctcaaacagagcaaaactACCCCCGAGCAGAGCAAGTTTAT
CCCccagacaaggcaaatttttcaGACCTTCACTGCCCCCTGACACTATA
TCCTTTACCCTCTCATGTACGAACAATTTCTTGAAGAGACCAATCCTGTT
TTTTGTGATATTTTGGGTGAATTTTGAACGCACAAGCTTCGAGAACAAAC
CTAGTTTAAACCATCAGATCGAATTCCAAAAATCAATACAGTAATCTTGT
TGTCATGGCAACCCTTTTACCAGATTGCAGAAAAAATAATAAGGCTTTTT
AATGGGTACTTCTAAAAATTGTCATTTGCATTTCCGGCcaatttcaaaag
tttgaatTGAAATTACTGACATCTAGCTTTTTCAGTGTTTAATACTGTAT
ACTGAGGGTGATTTTCATTAAATAGCTTGCAACCAAAAGCCAATTATTTT
CACCAAGAATAATTTCATCTGAGGTCATTATTTTTATCTACTTTGagaag
aaatttgaagaatgtCTTCTTTTGCAAAAGCTATTTACAGGTCTACTAAA
ATGTTTTGCAGAATAGTTTTTTATGTCATGCCAAAATATCGttacataga
tttataaagcccgaagggctatgTAGATGTcatgctttggctgaaaagtg
tgctgtggttaggtaggaaatcccaCCTAGGTCATGTAACATTACAATTG
AATTTCAGcgtttgaccaatcagaagcttcacgggtttttgaaaataata
gcGATGCGATATCATATtcttttgcctgcgatggcttaaagcacgacatc
tagcccttcgagctttataaatctatgtatCGTTATCCCTGTTTATCTAA
CAAATAAATTCACTAGCACAAGGGAAAAGTATAATGTCTTGCAAAAAGCT
AGAGCTTtgtagctggcacacaacgtcgtttcaacgttcatctaaagtTA
TATagatgttgtgaacgttagataaacgttgaaaaaacgttgcgtgccag
ctgggttgtaGCCACGTttggtgattttattttataGAAGCATTCTTCAA
GTCAAGGGAATGAGCACATTATGTAAGAACTTTTTTCATACGTATTGATT
CTAGATTTTAACTAAATTGATAGTTGGATGTCATTATGGGGAGCTTTACT
TTGTCTAAAACCGTTCCTTTTTCGGTATGTTTTGATCGAATGTACCTCtt
tgtttcaaaaatcttgCGAAAGATTTTGGAGATTAGGAGTCTGAAATGAG
AGGATTAAAAGGGATATTTTAActaatattttttgttatttcgaaaattg
attttaagtGGTCTGTGTGGTCTAAATTATGCAATAAAACCgacataaaa
caaaaacaaaaacattgaggCATTGGAAATATTACTTAACACAATTAACA
CGAAGAACGATGTTTTTCATGTCATGTTTtgagattttcagaaaaaaaaa
cacatgtaATAAATCAGGcgattgttttgaaatcaactGTTTGATATATT
GATCATTTCTACTCGCCATcaataaatattatttttcgtaatcgcaaaat
atttcttaccaATATAAGACATAACCTGATTGtctaatattttcaaaaca
tttcaaaacaCTTTGAAACAGAATTAGAGATTGGGAAGCAGACAGTGATA
AATCAACATTTGGAACATTTTGTGGAAGTAGTTCAAAATCTTCACTCTAT
TTTGGTGTTCTTCAATGTGGGCAGAAGAAGTAAAAAACAGTAATTAAAgt
ctattttgaaaatgatttttctatttttaaaatcGCGGATTTAAACATGT
CTTGTAACGTTTATTCCCCGTTTATTAAGCATTCACGAAATGGAAATGCT
CCTGAACTAGAGCGAGGCTTTTCCTCATGACAAATTTGACGTTCAATGTT
ATTTTGAGCCTAAGAAAGATTCATTTTTTCCCCCTTACCCttgtaatttt
ttcatttcacctCCTACTTCTTGGGACTTATTCAAACTCTAACTTCTTCG
GAGAAGAAATCATTCCCGTAAAATGAGAAAcaaagacacccccttctcac
agacccacttggTCCCCTTTCCTaatggaaaaatttgccaaaacaTCACT
TCtgcactgaaaataatcaaataaacagatcttcactgcaaaatattgtg
ctattgtttccatccccactgaattttctaacttgaaaataatggaattc
aaatccccagccataaaataCATGGAAATATCATTCCCAATCGGGTTAAA
ATCCGTTATTCTAGCCTTGCGTGCTGAAAATAccttaccgggtctgtgag
aaggggtgtaacATTAATTTGGAGCGACTTTTTCTAACCAGCATTGCCCT
CCATAGAACTTCAGATAACCAGGAGTATGCTGTAATCTTTCAAACTCAAA
GAAAACAAGGGTATTAAAGTTTTCCGGATTGGACACTCTAAACATTCTAT
TATCGCTAGTTACTATCTTTAGGTCTAAAGACACACCTTTTAGGTTCTTT
ACGTGCTTTATACACTAATAATCAGATCCTTCAAATCTGTCATGGATCAT
CGAATATTCTCAGGAAATATTTCATCGTTTTGTTGTTTTGACTAAATGAA
TGGTATTTGACGTCCTTGGGGGTCACTTCATATTTTAACAAGAGGAAAGG
AAGAGGACTATTTATCCGCGTGAAGAAAGCACTTCAAAGGCATTGACATT
TTTCTTGTTTATCTAACAGAGATGTCCTATTCATCAATTACGTGAGGGAC
TgggtatgactttttttctttgcttttgtTCCCGACAAAACCCATAAAGG
AACTAGTACCGTTTGAAAAGAAGGCAGTCATTAATTTTTGTAGCGAGCTA
AAGGAAGCTAGATTTTTGTCGCatgttcttgattttttggACATATCTAA
TTAGTCAGGTATGTTTGATATGCATCTAATGTCTAGGATTTAATAGATTG
TCGCGTACTCTTTGAGAAGATTCTCTTTAGATGatcattaaaagattttt
aattaCATTTTAATTCTTAATGAGGTGTTTAAAGAATGTCTAATTTAGCA
GACTTTGGTCGCGCATATAGCTTAAGAATGACAGTCGAAGCTATTTTTTC
TACTTGACACAATTCGAAGAATGATAATAGCTCTACCGGACATAATAATG
TTCCAATGTCATCATACTTCGAATTCCTGGTTTTCAAACTCATTAACCAA
CTTTTATTGTATGTTTCTATTGTCTTAATAAACATTTGTTTAATTGTATC
TATTGTTTTCTTAATATAAATAGGTCGTGTTTATCTTGTCAACGCATCAT
TCAAAAGATTGCACTCACGAAGTAAACAGCAAGAATTCAAAGAACTTAAT
CAACAAACGATACAAACTTCAACAAAGATGAATCAATTACAACTCTTATG
TCTGGCAATCCTCTGCACCGTCACATTTGCACGATATGCACCAACTTACC
AAAGATGTGAACCTGTACGTGTTGAAATGTGTAGAAACCTGGATCCAAAG
AATTGGGTTCGAACCTCGTTCCCAAATTTTATGAACCATTCATCATCCAT
TGTTGCTGAACGAGAACTTAAACAATATTATGACATCATTGATTCCAACT
GCTCACCATACCTGACAACCTTCTTATGCTCTTTATATATGCCGATCTGC
AAAGCTGGTATTGGTCGTATCCCACCTTGCAAATCGTTATGTCAAGCAGC
ACGCTCTGGATGTGAACCTTTGTTGAATTCAGCTCACATCAGATGGCCTT
ATTCCATGAATTGTGACCAATTCCCAGACAGTGGACAACTTTGCATTGAT
TTACCAGAAACAGCACCAACACCAAAGGCTCTGAATGAAGTTGAAGCTAA
TCAAATCCCTTCTAAAAGAACAGTCATCAAGAAAGGTGAGAATATTTTCC
AAACCTGTTTTTTACATCTTTAGTGCTAAAAAATACCAGTAGATTACGAT
TTTCTTAAGAAAGAAATCCAGTTTATTGTCTTAAagctgattttaaattt
tttaatcatattttctttaaacaatatctaaatcaaatcttttattttca
caGATAAATTACCATCAATCGCAAAAAAGGATCTGAAACCATTAGAAGAA
GTCGTTCTAGAATGTCCACCTGATAAACAAATCATGGTCCGTAAAATTCG
TCATTTTCCAGAACGTAATACTGATTGCTGCCCTGTAGACTCTAAAGAAA
AGATCTCAAGAGGATGCAATGGTAAACAAAAATGTGAAATCATCTTAGAT
GAAAACGTCATCGGACATGGTTGCGTAACATCGATGGAGAAAACTTCCGT
CAAATATAAATGTGTCGGACTTCAGCATAACGTCAAGACGCGTAAATCAA
TTGGGTGTcggaaaaacaataaaaatggtATATAGAAACATATTTCAATA
GACTTATAATTGACTATGAGACATAcccaaaaatgaaagaattattCCGA
CTGCAGCGAGACCAACGCGATGGTTTTCACACTTTATTTATACACTAAAC
atagattttattgaaaaaatttaatgtAAATTTAAGTTATAAAgagttaa
aaaattttaacctgtttttctttctgttattagtttttttatcatttatc
ttaattttaaaaacattgtaaatattttatatTAAAAGAttaattagaaa
aataaatattataagtaacaacaaagaaaattCCAAAATACAAGATTGTT
GCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00020416-exon-sc0000356-1491911889:264585..264741 | TCONS_00020416-exon-sc0000356-1491911889:264585..264741 | Clytia hemisphaerica | exon |
| TCONS_00020416-exon-sc0000356-1510915933:264585..264741 | TCONS_00020416-exon-sc0000356-1510915933:264585..264741 | Clytia hemisphaerica | exon |
| TCONS_00020416-exon-sc0000356-1575043694:264585..264741 | TCONS_00020416-exon-sc0000356-1575043694:264585..264741 | Clytia hemisphaerica | exon |
| TCONS_00020416-exon-sc0000356-1491911889:270008..270619 | TCONS_00020416-exon-sc0000356-1491911889:270008..270619 | Clytia hemisphaerica | exon |
| TCONS_00020416-exon-sc0000356-1510915933:270008..270619 | TCONS_00020416-exon-sc0000356-1510915933:270008..270619 | Clytia hemisphaerica | exon |
| TCONS_00020416-exon-sc0000356-1575043694:270008..270619 | TCONS_00020416-exon-sc0000356-1575043694:270008..270619 | Clytia hemisphaerica | exon |
| TCONS_00020416-exon-sc0000356-1491911889:270788..271440 | TCONS_00020416-exon-sc0000356-1491911889:270788..271440 | Clytia hemisphaerica | exon |
| TCONS_00020416-exon-sc0000356-1510915933:270788..271440 | TCONS_00020416-exon-sc0000356-1510915933:270788..271440 | Clytia hemisphaerica | exon |
| TCONS_00020416-exon-sc0000356-1575043694:270788..271440 | TCONS_00020416-exon-sc0000356-1575043694:270788..271440 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000356 | supercontig | sc0000356:264585..271440 + |
Blast
BLAST of TCONS_00020416 vs. Swiss-Prot (Human)
Match: SFRP4 (Secreted frizzled-related protein 4 OS=Homo sapiens GN=SFRP4 PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 2.631e-22 Identity = 62/155 (40.00%), Postives = 85/155 (54.84%), Query Frame = 1
Query: 262 MNQLQLLCLAILCTVTFARYAPTYQRCEPVRVEMCRNLDPKNWVRTSFPNFMNHSSSIVAERELKQYYDIIDSNCSPYLTTFLCSLYMPICKAGIGRIP--PCKSLCQAARSGCEPLLNSAHIRWPYSMNCDQFP--DSGQLCI-------DLPE 693
++ L LCL + + R AP CE VR+ MCR++ W T PN ++HS+ A ++QY +++D NCS L FLC++Y PIC P PCKS+CQ AR CEPL+ + WP S+ CD+ P D G +CI DLPE
Sbjct: 3 LSILVALCLWLHLALG-VRGAP----CEAVRIPMCRHMP---WNITRMPNHLHHSTQENAILAIEQYEELVDVNCSAVLRFFLCAMYAPICTLEFLHDPIKPCKSVCQRARDDCEPLMKMYNHSWPESLACDELPVYDRG-VCISPEAIVTDLPE 148
The following BLAST results are available for this feature:
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