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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020175 ID=TCONS_00020175|Name=TCONS_00020175|organism=Clytia hemisphaerica|type=transcript|length=2567bp
GGAGCCAGGAGCCTTGGACCATGGCACTGACACTGAATGAATTAATTCTT
TTGGCTTTTGACTCAATGAATTTAAAAAGATGATGACCATTCTACTTTGT
ATGCAAATTGCAATATTGTTGAAACAAAACGACGCGAAGAGTTTGCAAAC
AGGTCAAGATCAATCGAACAACAACTTTTCAACAAGAACAAACCATCAGC
TACCACTCAAGATATGAAAACGTCACACAACAATAATGCTTACAACATGC
ATTCAAACGATGACGACAATAATGACgtaataatgacgtcatcaaaacaa
gaTTCAACTCCGTCAACGTCTAGTAGTGAATGGGAAAAGAAACATCGACG
TTGCTGTTTTCGAAGAAGATTTCTGCTAATGTTAATTGTTGCTTTGTTTG
TAGCTTTCATTGTTGTTTTATCAATGATGCTTAATTACTCCTACAAACTG
AACAGCGATCTCAAAACCGATTCAAACAATATCGTTTTAGCAGGAAAGAA
AGGGAAATTGAAAATCTCATCTACTTCGAATGATGATGGTTGTGTTTTGG
AAGATGGACGAAAATCATTCCCCGATTTGGATTACGCAATGTTTGGATAT
AATGTACTTCGTGGTTATCCATTAGCTGTTGGGCATGACCCAGGGTTAAC
GCATCCTATATTTCGACATGATTATAATTCAGGAAAACATACGGCCGATT
GCCGTTATCATGTTCCGAGTGGTTACATTTTAGCCCCTGACGTATCctgt
gtgacgtcattttcatcaCATGTTGTCAAAGATAACTCACAATTTGTCAA
ATCGTTGAGCGTATCTGCTGAAGCATCAGGAGAAGGCTGGGGAGCAAGTT
TCTCAGCTAGTGCAGAATATAAAGATAAAACATCTATTATGTCAGCGAGT
GAGACTGTTTTTGTGTTTTCACAAGCTAAATGTAATTATTACTTTGCAAT
GATTGATGAAGTTAGGCCTCCACAGTTCGACCTATCTTTTCTCGAAATGG
TGAAATCAATCAAAACCGAAGATGACTCTCATCATTTTTTTGATTATTAC
GGCACTCATTATTTGACGTATGCGTTGTTTGGTGCGAAGTTTGTCTACGA
GAATAAAATGACTAAGTCAGATTACCAGAAAGAAAGTCAACAAACAGTTT
CAGTGTCTTTAAAAGCAAGTTATTCTGGTATCTTTTCGCTTAACGGCGGT
TTTGGGCTCACTAACGACCAAAAAGAGATTGcgaaaaatttcaaagagaA
AGTTGAGACTTCAACTATCACGATTGGTGCCCCGCCCCCCGAGGACGGAA
AAACGATGACTTGGGCTTCAACAGTTAAAGATAACCCAGTACCTGTTGAA
TATAAATTAGAATCGATCTTGAACTTGTTTACAGAGAGGTACATGGGTGA
AACAGATATAGATTATGTCTCCGTAAGGCAAAAGTTGGAGAAAGGCAAAT
TGACATACTGCTCAAACCTTCTAAATAAAGGCGAAGTGAATACGTGTAAA
CCAATTATTGCTGGTTATGTCTTATTTAAAGGATTGTTCTTTGGTAGAAA
TGCCTTTTCTGTATTCAAAAGCTCGTTTGATTTGTGTACGCAAAGATGTG
CCGACAGCCCGGATTGTCAAGCTGCTAGTTTTAATGAGAATACTTATAGC
TGTTTTCTATATCGAGCCACAAACGAGTCTATTTTTAACGTCGAAAAATC
AGAGCATGTTAAATCCGTTCTTTTCAAAGAGTCTTTGAAACTATTGGATA
AAACTTTATACTTGCAAAATGTTCGATTACCGACTGAAGTTTCAAGGGAG
ACAAGTGGAAACGCGGAAAATTCGACACGTTGTTTTGAGCAATGTCAACA
AGACCGTGTTTGTTTTGCTTACTCATTTCGAGATGGTGACGTCAAAACGA
ACTGCTTGCTTTTTCAAGAAAAGGATGTTGTTGCTGAAAGCTTAAAGTTT
GAGCAGAATGCNGTAGAAATGCCTTTTCTGTATTCAAAAGCTCGTTTGAT
TTGTGTACGCAAAGATGTGCCGACAGCCCGGATTGTCAAGCTGCTAGTTT
TAATGAGAATACTTATAGCTGTTTTCTATATCGAGCCACAAACGAGTCTA
TTTTTAACGTCGAAAAATCAGAGCATGTTAAATCCGTTCTTTTCAAAGAG
TCTTTGAAACTATTGGATAAAACTTTATACTTGCAAAATGTTCGATTACC
GACTGAAGTTTCAAGGGAGACAAGTGGAAACGCGGAAAATTCGACACGTT
GTTTTGAGCAATGTCAACAAGACCGTGTTTGTTTTGCTTACTCATTTCGA
GATGGTGACGTCAAAACGAACTGCTTGCTTTTTCAAGAAAAGGATGTTGT
TGCTGAAAGCTTAAAGTTTGAACAGAATGCATTGACTGCTATTCATATAA
ATGACGATGACCcattcttttgaaagaaagtctctctctaattcgaatct
ctattattcgaatctttctgtgaTTTGATCTAAAATATTCGTCCCCTCAG
CGCTGCAAAGTGTTTAAAtgactctctgtaattcgaatctttttctaaTT
AGAATGATACTTTTAGG Run BLAST on NCBI protein sequence of TCONS_00020175-protein >TCONS_00020175-protein ID=TCONS_00020175-protein|Name=TCONS_00020175-protein|organism=Clytia hemisphaerica|type=polypeptide|length=647bp
MKTSHNNNAYNMHSNDDDNNDVIMTSSKQDSTPSTSSSEWEKKHRRCCFR
RRFLLMLIVALFVAFIVVLSMMLNYSYKLNSDLKTDSNNIVLAGKKGKLK
ISSTSNDDGCVLEDGRKSFPDLDYAMFGYNVLRGYPLAVGHDPGLTHPIF
RHDYNSGKHTADCRYHVPSGYILAPDVSCVTSFSSHVVKDNSQFVKSLSV
SAEASGEGWGASFSASAEYKDKTSIMSASETVFVFSQAKCNYYFAMIDEV
RPPQFDLSFLEMVKSIKTEDDSHHFFDYYGTHYLTYALFGAKFVYENKMT
KSDYQKESQQTVSVSLKASYSGIFSLNGGFGLTNDQKEIAKNFKEKVETS
TITIGAPPPEDGKTMTWASTVKDNPVPVEYKLESILNLFTERYMGETDID
YVSVRQKLEKGKLTYCSNLLNKGEVNTCKPIIAGYVLFKGLFFGRNAFSV
FKSSFDLCTQRCADSPDCQAASFNENTYSCFLYRATNESIFNVEKSEHVK
SVLFKESLKLLDKTLYLQNVRLPTEVSRETSGNAENSTRCFEQCQQDRVC
FAYSFRDGDVKTNCLLFQEKDVVAESLKFEQNXVEMPFLYSKARLICVRK
DVPTARIVKLLVLMRILIAVFYIEPQTSLFLTSKNQSMLNPFFSKSL Run BLAST on NCBI transcript from alignment at sc0000350:397301..401406+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020175 ID=TCONS_00020175|Name=TCONS_00020175|organism=Clytia hemisphaerica|type=transcript|length=4106bp|location=Sequence derived from alignment at sc0000350:397301..401406+ (Clytia hemisphaerica)
GGAGCCAGGAGCCTTGGACCATGGCACTGACACTGAATGAATTAATTCTT
TTGGCTTTTGACTCAATGAATTTAAAAAGGTAATGCAGCTTAATTCATTT
TATATATGAAGTAACCACAAATCCCCCACGTTTTGAGTACGTTAAATATC
TATTGCCAATAAAATCATGATAATTCGTGATGAAATCCGGAGATTTTGGA
TCCAACTAACTgcgaaaaaaaatatcttagCCCACGACCTCTTTATATCA
AGTACCATATACGTCAAACTTCAAACCTAATAAATTCTCCAGATCCTTCA
GTGATTCATAATGAATCGCAAACTGATTTTATTTCCAACGCTGTAAAAGG
AAGACTCTTACAAGGAATGTCAGCTTTAGAAGGTAAGTTATTCTGGCGGT
CGAATCATATCAGTNCAACGCTGTAGAAGGAAGACTCTTACAAGGAATGT
CAGCTTTAGAAGGTAGTTATTCTGGCGGTCGAATCATATCAGTTACATTC
TAACTAAGCTATGAGTTATCCGTCTTAAAGCCTATTTCAAAGGATTCGTG
CATCAGTTACATGATCTTCTCTATTCAATTTGCAGGGGGAAAATGCACAC
ATTTGCAGGTTTCCCTTCGAGAAAGACGATTTTTGTCATCATTCAATAGA
CGATATTGgtttaacgtgaaaactcagatttgacccccgagaattgccca
caatgctttgcacGGAAAAATGTTCACGGTGAAATtctttccgcacaaag
cattgtgggcaattcccggggtcaaatctgagttttcatgtgaagCCGAT
ATCGTTTATTGACTTGGAAATTTATGAAATCTTTTCTATTGTTGTTGCCT
TTGTAAAGCATTTAATCTCAATTCGCAAGAGAGTGTTCAATCATAAAAAG
TTTATTACCGCAGTGACGTAGAAAATATCATGTACTCAAAAGACTAATGC
TATGAAATAGGCAGCTGATTCTCGGGCCGCATCGTACCCGCCAATAACCC
GCGTTTACTATCCTTCTAActgacgataacatcgtcttaTCAAAACTGTG
ATACAGAACTTTTCACATTCcaggtaggattttttcagccagtggggatg
aaaataacaaactgaaactcgatgggcaATATTCTCATACTTTTTATGGA
TatggatttcaattcttttgatcTCAACTTCAAAAATTCAGTGGTTATGG
GAAAGAtatcacaatattttgcagtgaggggtggcttatttgattatttt
cagcggggacaaaaattggaggacaattttccaccggggacgatatttta
gccaatttttccagtcggaagggttcccagtgggtctgtgagaagggggt
gttgtgATAACCAATGTCAAGTACAACGGGCAGTGTTCATACGGTTGAGT
GTAATATTTTATACAATTCACAATAAGAAGATGAGAACGCTCAGTTAATT
TTCTGTATTGCAAAACACTTGATGATTTTATTTCTGAAATAACACAATCT
TGACAACCTAACCAAAACTTGTGCAACAAACTGCATTTAGTGTTTCGTCA
TTCCGGTAACTTGATCTCGAACAAATAATCTTTTTGCTAAACAATTCTTT
CTGTGTTTTGCCCTATAGATGATGACCATTCTACTTTGTATGCAAATTGC
AATATTGTTGAAACAAAACGACGCGAAGAGTTTGCAAACAGGTCAAGATC
AATCGAACAACAACTTTTCAACAAGAACAAACCATCAGCTACCACTCAAG
ATATGAAAACGTCACACAACAATAATGCTTACAACATGCATTCAAACGAT
GACGACAATAATGACgtaataatgacgtcatcaaaacaagaTTCAACTCC
GTCAACGTCTAGTAGTGAATGGGAAAAGAAACATCGACGTTGCTGTTTTC
GAAGAAGATTTCTGCTAATGTTAATTGTTGCTTTGTTTGTAGCTTTCATT
GTTGTTTTATCAATGATGCTTAATTACTCCTACAAACTGAACAGCGATCT
CAAAACCGATTCAAACAATATCGTTTTAGCAGGAAAGAAAGGGAAATTGA
AAATCTCATCTACTTCGAATGATGATGGTTGTGTTTTGGAAGATGGACGA
AAATCATTCCCCGATTTGGATTACGCAATGTTTGGATATAATGTACTTCG
TGGTTATCCATTAGCTGTTGGGCATGACCCAGGGTTAACGCATCCTATAT
TTCGACATGATTATAATTCAGGAAAACATACGGCCGATTGCCGTTATCAT
GTTCCGAGTGGTTACATTTTAGCCCCTGACGTATCctgtgtgacgtcatt
ttcatcaCATGTTGTCAAAGATAACTCACAATTTGTCAAATCGTTGAGCG
TATCTGCTGAAGCATCAGGAGAAGGCTGGGGAGCAAGTTTCTCAGCTAGT
GCAGAATATAAAGATAAAACATCTATTATGTCAGCGAGTGAGACTGTTTT
TGTGTTTTCACAAGCTAAATGTAATTATTACTTTGCAATGATTGATGAAG
TTAGGCCTCCACAGTTCGACCTATCTTTTCTCGAAATGGTGAAATCAATC
AAAACCGAAGATGACTCTCATCATTTTTTTGATTATTACGGCACTCATTA
TTTGACGTATGCGTTGTTTGGTGCGAAGTTTGTCTACGAGAATAAAATGA
CTAAGTCAGATTACCAGAAAGAAAGTCAACAAACAGTTTCAGTGTCTTTA
AAAGCAAGTTATTCTGGTATCTTTTCGCTTAACGGCGGTTTTGGGCTCAC
TAACGACCAAAAAGAGATTGcgaaaaatttcaaagagaAAGTTGAGACTT
CAACTATCACGATTGGTGCCCCGCCCCCCGAGGACGGAAAAACGATGACT
TGGGCTTCAACAGTTAAAGATAACCCAGTACCTGTTGAATATAAATTAGA
ATCGATCTTGAACTTGTTTACAGAGAGGTACATGGGTGAAACAGATATAG
ATTATGTCTCCGTAAGGCAAAAGTTGGAGAAAGGCAAATTGACATACTGC
TCAAACCTTCTAAATAAAGGCGAAGTGAATACGTGTAAACCAATTATTGC
TGGTTATGTCTTATTTAAAGGATTGTTCTTTGGTAGAAATGCCTTTTCTG
TATTCAAAAGCTCGTTTGATTTGTGTACGCAAAGATGTGCCGACAGCCCG
GATTGTCAAGCTGCTAGTTTTAATGAGAATACTTATAGCTGTTTTCTATA
TCGAGCCACAAACGAGTCTATTTTTAACGTCGAAAAATCAGAGCATGTTA
AATCCGTTCTTTTCAAAGAGTCTTTGAAACTATTGGATAAAACTTTATAC
TTGCAAAATGTTCGATTACCGACTGAAGTTTCAAGGGAGACAAGTGGAAA
CGCGGAAAATTCGACACGTTGTTTTGAGCAATGTCAACAAGACCGTGTTT
GTTTTGCTTACTCATTTCGAGATGGTGACGTCAAAACGAACTGCTTGCTT
TTTCAAGAAAAGGATGTTGTTGCTGAAAGCTTAAAGTTTGAGCAGAATGC
NGTAGAAATGCCTTTTCTGTATTCAAAAGCTCGTTTGATTTGTGTACGCA
AAGATGTGCCGACAGCCCGGATTGTCAAGCTGCTAGTTTTAATGAGAATA
CTTATAGCTGTTTTCTATATCGAGCCACAAACGAGTCTATTTTTAACGTC
GAAAAATCAGAGCATGTTAAATCCGTTCTTTTCAAAGAGTCTTTGAAACT
ATTGGATAAAACTTTATACTTGCAAAATGTTCGATTACCGACTGAAGTTT
CAAGGGAGACAAGTGGAAACGCGGAAAATTCGACACGTTGTTTTGAGCAA
TGTCAACAAGACCGTGTTTGTTTTGCTTACTCATTTCGAGATGGTGACGT
CAAAACGAACTGCTTGCTTTTTCAAGAAAAGGATGTTGTTGCTGAAAGCT
TAAAGTTTGAACAGAATGCATTGACTGCTATTCATATAAATGACGATGAC
Ccattcttttgaaagaaagtctctctctaattcgaatctctattattcga
atctttctgtgaTTTGATCTAAAATATTCGTCCCCTCAGCGCTGCAAAGT
GTTTAAAtgactctctgtaattcgaatctttttctaaTTAGAATGATACT
TTTAGG Coding sequence (CDS) from alignment at sc0000350:397301..401406+ >TCONS_00020175 ID=TCONS_00020175|Name=TCONS_00020175|organism=Clytia hemisphaerica|type=CDS|length=1944bp|location=Sequence derived from alignment at sc0000350:397301..401406+ (Clytia hemisphaerica)
ATGAAAACGTCACACAACAATAATGCTTACAACATGCATTCAAACGATGA
CGACAATAATGACgtaataatgacgtcatcaaaacaagaTTCAACTCCGT
CAACGTCTAGTAGTGAATGGGAAAAGAAACATCGACGTTGCTGTTTTCGA
AGAAGATTTCTGCTAATGTTAATTGTTGCTTTGTTTGTAGCTTTCATTGT
TGTTTTATCAATGATGCTTAATTACTCCTACAAACTGAACAGCGATCTCA
AAACCGATTCAAACAATATCGTTTTAGCAGGAAAGAAAGGGAAATTGAAA
ATCTCATCTACTTCGAATGATGATGGTTGTGTTTTGGAAGATGGACGAAA
ATCATTCCCCGATTTGGATTACGCAATGTTTGGATATAATGTACTTCGTG
GTTATCCATTAGCTGTTGGGCATGACCCAGGGTTAACGCATCCTATATTT
CGACATGATTATAATTCAGGAAAACATACGGCCGATTGCCGTTATCATGT
TCCGAGTGGTTACATTTTAGCCCCTGACGTATCctgtgtgacgtcatttt
catcaCATGTTGTCAAAGATAACTCACAATTTGTCAAATCGTTGAGCGTA
TCTGCTGAAGCATCAGGAGAAGGCTGGGGAGCAAGTTTCTCAGCTAGTGC
AGAATATAAAGATAAAACATCTATTATGTCAGCGAGTGAGACTGTTTTTG
TGTTTTCACAAGCTAAATGTAATTATTACTTTGCAATGATTGATGAAGTT
AGGCCTCCACAGTTCGACCTATCTTTTCTCGAAATGGTGAAATCAATCAA
AACCGAAGATGACTCTCATCATTTTTTTGATTATTACGGCACTCATTATT
TGACGTATGCGTTGTTTGGTGCGAAGTTTGTCTACGAGAATAAAATGACT
AAGTCAGATTACCAGAAAGAAAGTCAACAAACAGTTTCAGTGTCTTTAAA
AGCAAGTTATTCTGGTATCTTTTCGCTTAACGGCGGTTTTGGGCTCACTA
ACGACCAAAAAGAGATTGcgaaaaatttcaaagagaAAGTTGAGACTTCA
ACTATCACGATTGGTGCCCCGCCCCCCGAGGACGGAAAAACGATGACTTG
GGCTTCAACAGTTAAAGATAACCCAGTACCTGTTGAATATAAATTAGAAT
CGATCTTGAACTTGTTTACAGAGAGGTACATGGGTGAAACAGATATAGAT
TATGTCTCCGTAAGGCAAAAGTTGGAGAAAGGCAAATTGACATACTGCTC
AAACCTTCTAAATAAAGGCGAAGTGAATACGTGTAAACCAATTATTGCTG
GTTATGTCTTATTTAAAGGATTGTTCTTTGGTAGAAATGCCTTTTCTGTA
TTCAAAAGCTCGTTTGATTTGTGTACGCAAAGATGTGCCGACAGCCCGGA
TTGTCAAGCTGCTAGTTTTAATGAGAATACTTATAGCTGTTTTCTATATC
GAGCCACAAACGAGTCTATTTTTAACGTCGAAAAATCAGAGCATGTTAAA
TCCGTTCTTTTCAAAGAGTCTTTGAAACTATTGGATAAAACTTTATACTT
GCAAAATGTTCGATTACCGACTGAAGTTTCAAGGGAGACAAGTGGAAACG
CGGAAAATTCGACACGTTGTTTTGAGCAATGTCAACAAGACCGTGTTTGT
TTTGCTTACTCATTTCGAGATGGTGACGTCAAAACGAACTGCTTGCTTTT
TCAAGAAAAGGATGTTGTTGCTGAAAGCTTAAAGTTTGAGCAGAATGCNG
TAGAAATGCCTTTTCTGTATTCAAAAGCTCGTTTGATTTGTGTACGCAAA
GATGTGCCGACAGCCCGGATTGTCAAGCTGCTAGTTTTAATGAGAATACT
TATAGCTGTTTTCTATATCGAGCCACAAACGAGTCTATTTTTAACGTCGA
AAAATCAGAGCATGTTAAATCCGTTCTTTTCAAAGAGTCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020175-exon-sc0000350-1491911889:397301..397379 | TCONS_00020175-exon-sc0000350-1491911889:397301..397379 | Clytia hemisphaerica | exon |
| TCONS_00020175-exon-sc0000350-1510915933:397301..397379 | TCONS_00020175-exon-sc0000350-1510915933:397301..397379 | Clytia hemisphaerica | exon |
| TCONS_00020175-exon-sc0000350-1575043694:397301..397379 | TCONS_00020175-exon-sc0000350-1575043694:397301..397379 | Clytia hemisphaerica | exon |
| TCONS_00020175-exon-sc0000350-1491911889:398919..401406 | TCONS_00020175-exon-sc0000350-1491911889:398919..401406 | Clytia hemisphaerica | exon |
| TCONS_00020175-exon-sc0000350-1510915933:398919..401406 | TCONS_00020175-exon-sc0000350-1510915933:398919..401406 | Clytia hemisphaerica | exon |
| TCONS_00020175-exon-sc0000350-1575043694:398919..401406 | TCONS_00020175-exon-sc0000350-1575043694:398919..401406 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000350 | supercontig | sc0000350:397301..401406 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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