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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018670 ID=TCONS_00018670|Name=TCONS_00018670|organism=Clytia hemisphaerica|type=transcript|length=5216bpRun BLAST on NCBI protein sequence of TCONS_00018670-protein >TCONS_00018670-protein ID=TCONS_00018670-protein|Name=TCONS_00018670-protein|organism=Clytia hemisphaerica|type=polypeptide|length=708bp MGKKKLQEMNVDEFMKHGIDSDQSDQEESELLEEESLLADEGKHQRKNEKRun BLAST on NCBI transcript from alignment at sc0000304:103524..129890- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018670 ID=TCONS_00018670|Name=TCONS_00018670|organism=Clytia hemisphaerica|type=transcript|length=26367bp|location=Sequence derived from alignment at sc0000304:103524..129890- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000304:103524..129890- >TCONS_00018670 ID=TCONS_00018670|Name=TCONS_00018670|organism=Clytia hemisphaerica|type=CDS|length=34032bp|location=Sequence derived from alignment at sc0000304:103524..129890- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018670 vs. Swiss-Prot (Human)
Match: NOC2L (Nucleolar complex protein 2 homolog OS=Homo sapiens GN=NOC2L PE=1 SV=4) HSP 1 Score: 340.502 bits (872), Expect = 1.267e-99 Identity = 176/483 (36.44%), Postives = 285/483 (59.01%), Query Frame = 1
Query: 3217 STTVTHQMIADWXXXXXXXXXXXX-XXVMSAFHASVTVMAPTEEEPSKKLRFSAKEGSVFNSLATLCLKHSIRILDKNIQYSKEKKGKSTSL-PSTSKNWGKIKVTIKQYMMDLLQLLRQMSESSMLAIILRHCQLLAPYFCCFPKILKMLIKRLIRMWSGGEEHVRVLAFMCVRKSLTLQPNLF-EFVLKKMYFGFVQNTKFVTPKTKPMLIFMQNSLVEMFSLNETTTYQHAFIYIRQLAIHLRNAITVKKKDGHLAVYNWQFISCLQLWSRVIGELH-GEILKPLVYPIVQITIGVLRLVPSARYYPIRFQCIDILNYISEKTGVYIPTASFVLEAIESKEFLKKPATSDKSP-DLKSVLKVSKSQVTSKAFQDAIADLSFESLLEHYVIYSNSIAFPELIFPVCHRLKRLSKTCKVFKLRKDMKTLVDKIQKHGESLNKERNNVNFSPKDTDQVREWEEKQKAKKNSLDQFFATWKEMK 4650
S VT M+ WK ++ L V+ AF A+V ++E ++ +F + + FN+L T C++ I L K + + K K S L PS+S WGK++V IK Y+ +QL+ +SE+++LA +LRH +L P F FPK +ML+KR++ +WS GEE +RVLAF+ + + + + F VLK+MY +V+N KF +P P + FMQ +L E+ +L YQHAF+YIRQLAIHLRNA+T +KK+ + +VYNWQ++ CL LW RV+ E L+PLVYP+ Q+ IG ++L+P+AR+YP+R CI L +S +G +IP F+LE + +F +KP P + +LK+S + KA++D + + ++ LE+ ++ I FPEL+ PV +LK + CKV + ++ L+ K+Q++ + R V+F + V WE+ + + L +++ W++++
Sbjct: 146 SVPVTVAMVERWKQAAKQRLTPKLFHEVVQAFRAAVATTR-GDQESAEANKFQVTDSAAFNALVTFCIRDLIGCLQK-LLFGKVAKDSSRMLQPSSSPLWGKLRVDIKAYLGSAIQLVSCLSETTVLAAVLRHISVLVPCFLTFPKQCRMLLKRMVIVWSTGEESLRVLAFLVLSRVCRHKKDTFLGPVLKQMYITYVRNCKFTSPGALPFISFMQWTLTELLALEPGVAYQHAFLYIRQLAIHLRNAMTTRKKETYQSVYNWQYVHCLFLWCRVLSTAGPSEALQPLVYPLAQVIIGCIKLIPTARFYPLRMHCIRALTLLSGSSGAFIPVLPFILEMFQQVDFNRKPGRMSSKPINFSVILKLSNVNLQEKAYRDGLVEQLYDLTLEYLHSQAHCIGFPELVLPVVLQLKSFLRECKVANYCRQVQQLLGKVQENSAYICSRRQRVSFGVSEQQAVEAWEKLTREEGTPLTLYYSHWRKLR 626 The following BLAST results are available for this feature:
BLAST of TCONS_00018670 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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