TCONS_00018434 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018434
Unique NameTCONS_00018434
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1130

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018434 ID=TCONS_00018434|Name=TCONS_00018434|organism=Clytia hemisphaerica|type=transcript|length=1130bp
tttaagataatgataaaaattacaaaaagcttGAAAAGGTTTGGTTTATT
ACTCGGCACTGGAATCAATGTGTTTTGTGTGGGACATTGTATCTTCACGT
ATGGAGCTGAGTTGACCTTCTTATCAGGCCCTTCGATGCTTCCGACCTTC
AATAAATATGGAGACGCAGACGTCGTCATCACTGAGAAGATATCTAAACG
CTCTACAGCTTCTATCAAAGTAGGAGACATAGTTATATCCAAGTCACCAA
CAAGCCCAACGAATCTTGTTTGCAAGAGAGTGGCTGCTACAGCTGGTGAT
CATGTGAGAAGTTCCCCTGAAATGTTGACACATGGCTGCCCTAAACTGTT
CGAGGTACCGCGTGGTCATATTTGGTTGCTAGGCGACAACCCTGAGAATT
CAACGGATTCGAGAAGCTATGGAGCTGTTCCGATTGGCCTTATTCATGGG
AAAGTCTGCTTCAAGGTATGGCCAATACCGGATTTTGGATTTGTTTCTTA
AAGGCGGAAAAAAAACGACAAGCAAATTGTGGTATGAAAACCTTTTGATG
AAGTATTCCATATTATCCTTTAATAAAAACAGATTCGTGAAAAATCGTGG
AAAAGTTCCCTAGAAACAATTCTCTTGTCTACCTTGTCCAGTTTGCACGc
aataagaaaaattattttgaatttgaatggaCCTTGTCAACCCTTGTCAA
ctatttaataatttttttgcctTTCTATCTGATGGGAAATTTGAGCAAGG
ATGAATTTCCAAATTATGAATATAATCGACGAAAATTTGactaattttca
aaacatctgTAGGGAAAAGTGACTTCTCTAAGGGATTTAAATTTTCCCAA
CTAGAATTTTTAAATGCTGGCTTATTTTTCCTCATAAAGGtatatcaaat
tattttttattctgCTGAACTTTCTACAACGTGATAATGTAAACATTTTA
TAGATGAGATTTAAagtttcataatttcaaaaccATCGGAAAAACTGTTT
CCATTTCCTTTACCAATCCAATATAAGGGGAGGAAAATGGGGAAATTCTT
GGTTTAGCAGCATTATAATGCACGGAGTGAGTATAGATGTAGGTAAGACA
TGTTTccgatatttttttcgaaataagGAA
Run BLAST on NCBI

protein sequence of TCONS_00018434-protein

>TCONS_00018434-protein ID=TCONS_00018434-protein|Name=TCONS_00018434-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
FKIMIKITKSLKRFGLLLGTGINVFCVGHCIFTYGAELTFLSGPSMLPTF
NKYGDADVVITEKISKRSTASIKVGDIVISKSPTSPTNLVCKRVAATAGD
HVRSSPEMLTHGCPKLFEVPRGHIWLLGDNPENSTDSRSYGAVPIGLIHG
KVCFKVWPIPDFGFVS
Run BLAST on NCBI

transcript from alignment at sc0000300:298418..310679+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018434 ID=TCONS_00018434|Name=TCONS_00018434|organism=Clytia hemisphaerica|type=transcript|length=12262bp|location=Sequence derived from alignment at sc0000300:298418..310679+ (Clytia hemisphaerica)
tttaagataatgataaaaattacaaaaagcttGAAAAGGTTTGGTTTATT
ACTCGGCACTGGAATCAATGTGTTTTGTGTGGGACATTGTATCTTCACGT
ATGGAGCTGAGTTGACCTTCGTAAGTAGCCTCCTCACAACCTTAGGGATT
TATATATCCTCAACTTCACCTTCTTAATTGATACTGCTTCACCTTATTTT
AAGCGAATTagattatgaaaatttaactagAAGGTCATAATATGGATTTC
ATAATGTGTTATGTAATTTTGGACAATCTTTCAGAATATCATACTTGTAA
TTTACAAGTTACTTTGCTTTCATATTCAAAAAGAAATAGGAACCGTTGAA
CGCCCTCAAATATTTGTAAGATAATAAGTATTATTCATAGGAATAATTAG
CTCTTGAATGTTACTCAttgaattttgttttctgtttCTTTAGTTATCAG
GCCCTTCGATGCTTCCGACCTTCAATAAATATGGAGACGCAGACGTCGTC
ATCACTGAGAAGATATCTAAACGCTCTACAGCTTCTATCAAAGTGTAAGA
TCACTTTAAAACATTGTTTTTACTGCTCAGGTTGTTTTGATAAGGTCACT
TTCTCATAAtattttctcaagaattatatGGATCAAAAAATAGCTAAATG
AAATCGCATTCAACTTTTTCCTGTGCATCAATTCTTTTTTCTCGGANAGT
GTAAGATCACTTGCGAAAACATTGTTTTTACTGCTCAGGTTGTTTTTATA
AGGTCACTTTctcataatatttttcaaagaattataTGGATTACAAAATA
gctaaataatttttcttattttccaaagaaatctcATTCGACCTTCGGTG
CGTCAATtctttttctcggaaaatttcactttctcGACGATGATACACCT
AAGATATTAAACTTTTCAACCTATGATACGATGAAAAGTTGTGGGAGTTC
TGAACTTAAGATTCTTTTTCGAACTTGTATACTTCAAACTTAGATGTTGT
AGGAAGATCTCTCGCCAATGGCTATTTGTAGTTGcgatttttagttttta
tttcttgtatTCCTTTTTTATTCAGAGGAGACATAGTTATATCCAAGTCA
CCAACAAGCCCAACGAATCTTGTTTGCAAGAGAGTGGCTGCTACAGTATG
TTGCCcaaatttgtttatttcttcATTGGGCCTCTATCAACAAAATCAAC
AACATTAGCAAAATTTTGGTAccgtggagtctctttaactcgaacatttA
TAGCTCcaatatacgttttttttttttaagagactagttttaccaagcag
cctcaatgttccttaagaaatcggccttttgagccttaaatgtttcttat
atgtttctaaactttttgacataatcagcctcgtgaaatttccttaactt
gaaaaaatttgtgttcgagttatgaagactttGCTGTATTTTTCCTTTAA
TTCTAAAATTGGCAATCCTTTCTAAAGATCTTTATCTTCCCAAAGAATTA
AACTCCTGGGAGATTCAGAACACTCACTTGGACTAGTTTTCTCAAGGCAA
CCCCCTAAACCAGCTTCACGATTAATTTCTTTCGGACAGGCTGGTGATCA
TGTGAGAAGTTCCCCTGAAATGTTGACACATGGCTGCCCTAAACTGTTCG
AGGTAATGATTATTTTTATCGGTCTTAACTTAAAAGAGATTGTATAAGGC
TATCAAATCCAAGCAGTGGTGCAAACTCTTTGGGAGGCTTCAGATTTAGG
TTAatattttcgtgattttagATTTAAGAAGAAAAGGCTCGTAATTTTGT
GCTAGTAGCAATCAATTCAATACATATATGTTTAATTTCTGGCAAGCTCG
CAATGTATGGGCAGGCGAAATCGTCGGCCTTTTCAATACACGTCAGATCT
GAATCTGACGGTATTCCTAAAAACATTAGACGTATTATAGAGTAGTATGG
TTGTAACATGATATATAATATACTATTTAAACATATTACATCAGACNAAA
AACATTAGACGTATTATAGAGTAGTATGGTTGTAACATGATATATAATAT
ACTATTTAAACATATTACATCAGACATTAGGCATAAGTAGTCTGGTGTTT
TTAAGAGCTATTAGCCGTtctagggttagggctaggccaaaatatttttc
tggtttcaatggttttgtATGTACTTCAGTGTTTCTGCTTGTTTTTAAAA
GCtattggccgttctaagcaagtagggctaggcCCAACTATTTtcctggt
ttcaatggttttgtATGTACTTCAgtgtttttccttgtttttacaAGACA
TCGGCAGATTGGCCCGGCTACTAGCTAAGCAAGAGAAGGGTTATGTCGAA
CTATTTGTCTGGTTTCactggtttcataggtactccagtgttttcacttg
tttttacgAGACATTGCCTTTTCCTAGCTAAGCAAGTGGAGCTAAGcaga
actatttttctggtttcaatggttttatATGTACTTCAGTGTTTCTGCTT
GTTTTTAAGAGCtattggccgttctaagcaagtagggctaggcccaacta
tttttctggtttcaatggttttgtATGTACTTCAgtgtttttccttgttt
ttacaAGACATCGGCAGATTGGCCCGGCTACTAGCTAAGCAAGAGAAGGG
TTATGTCGAACTATTTGTCTGGTTTCactggtttcataggtactccagtg
ttttcacttgtttttacgAGACATTGCCTTTTCCTAGCTAAGCAAGTAAA
GCTAAGcagaactatttttctggtttcaatggttttatatgtactccagt
gtttttgcttgtttttaagagctattggccgttctaagcaagtagggcta
ggcccaactatttttctggtttcaatggtttcataggtactccagtgttt
tcgcttgtttttaagagatctaggccgttctaagcaagtagggctagacc
taccagagatttgggaaaagaggataagaaatgcgctattcatctatttg
aagctaggctgtagaatcttttgtttctattgaaatgtctgcGGCCGATC
GATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNTCAAGTTTTGCATGTATAAAAACACTTTGC
CTTTGCAGTGGTTGCTTttactttttcgttttttagccTGCAGGTCCACA
TCAGTTTTTACTGCCAATGTATATGCAattgtatataatatatgtatata
attttgtatatagaacctgacctgcattaacaaataaattaataataata
ataatagccAGGGACAACCTGGATACAAAACAAACATCCAAATAAATACA
GATTCGATAAAAATTCTCCAGACTGATCAAATTTACATAATACATATATG
GAAATCCACTTTTTCCAGAGAACATTTTCCAAGTATATGTCCAATTTCAA
AGGATATGTAGGCGGTGCTCAACCAGGTTCAACTGNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNatatgtactccagtgttttcac
ttgtttttaagagatattggccgttctagccaagcaagtggagctaggcc
gaactatttttctggtcccaatggtttcatatgtactccagtgttttcgt
ttgttttcgagagatattggccgttctaagcaagtagggctaggccgaac
tgtttttctggtttcaatggattcatatgtactccagtgttttcccttgt
ttttaagAGTTCGCTTAAAACACAATCTGAGAGAACTCACTAGCTTCTGA
ATTCAGTCAATCTATATCCGCTTTTATTATTAACATCACTTTGAGTATGC
TTGCAATTTTTGACGATTTCTTATCTTAAGATATCATATTTTGCTAATCC
ATaattattttgattaatttatGTCATTTTGTCATGAAAATAATGATAGG
ATAATGATCACGCTCGTCTTTCTAAAACCTGCCTTTCTGAGACCTAACNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCACATTCGGTATGCCAAATATTTTT
ACTATAATTGTCTTTTTAGGCGtcatattttgtgattttgtcaatatttt
tgtcaataacTATCATTAAGTCATGTTTTAAAGTAACAATGGAAAAATAG
ATTAATTTCCTCTCTTGAAACCACTCTCTCAGATACCTTACAAGCTTCTG
ACAGACTCTCAGAGACTATACAAGCTTCTGACAGACTCTCAGAGACCTTA
CAAGCTTCTGACAGATTCAACTTTATATCCTTTCGCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCAAATTATCACTTGGCTGTATATCAGTGAAAGTTACAAGT
GCAAAGAGTTACATGTGTTACGAGTACTGGTAACTAGATATGTAATGTTA
GGTTTACCGACCCAGGTTACCTACAATGCCgataaaaacaagtgaaaaca
ctggagtacatatgaatccattgaaaccagaaaaaaagtttggcctagcc
ctacttgcttagaacggccaatatctcttGAAAACAAGCGAAACCACTGG
AGTACATATataaccattgaaaccagaaaaacagttcggcctagccctac
ttgcttagaacggccaatatctcttgaaaacaagcgaaaccactggagta
catatgaaaccattgaaaccaaaaaaaatagttcggcctagctccacttg
cttagctagaacggcctatatctcttaaaaacaagcgaaaacactggagt
acataagaaaccattgaaaccagaaaaatagttcggcctGCTCCACTTGC
TCAGCTAGAACGGCCTACATCTcttgaaaacaagcgaaaacactggagta
cctatgaaaccattgagaccagaaaaatagtttggCCTAGCTCAACTTGC
TTAGCTAAAATGGGCAGTGGCTTGTAAAAACAAGCGCAAACACTGGAGAA
CCTaaaaaaccattgaaaccattgaaaccagaaaaatagttctaACCCTT
TTTGCTTAGCTGGAttgaaaacaagcgaaaacactcGAGTACAtaatgaa
accattgaaaccagaaaaatagttggaCCTAACCCTTCTTGCTtagctaa
aataaaaaacaagcgaaaacactggagtacatatgaaaccattgaaacca
gaaaaatagttaggcctagccctacttgcttagaacggcctatatctctt
aaaaacaagcgaaaacagtggagtacctatgaaatcattgaaaccagaaa
aatagtccgggccagccctacttgcttagaacggcctatatctcttgaaa
acaagcgaagacactggagtacctatgaaaccattgaaaccagaaaaata
gtccgggccagccctacttgcttagaacggcctatatctcttaaaaacaa
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNtacttgcttagaacggccaatttcttgtaa
aaacaagggaaaacactggagtacctatgaaaccattgaaaccagaaaaa
tagttcggcctagcTCCACTTGTTTAGctagaacggccaatatctcttaa
aaacaagtgaaaacactggagtacctatgaaaccattgaaatcagaaaaa
tagttcgaccTAACCCTTTTTCCTTAGCCAGCAGCAGGGCCAATCTGCCG
ATGTCTTGTAAAAACAAGTAAAGGGAAAACTGATCCGTCTGATGTAATAT
GTTTAAATAGTATATTATATATCATGTTACAACCATACTACTCTTTAATA
CGTCTAATGTTTTTTGGAATACCGTCAGATTCAGATCTGACGTGTATTGA
AAAGGCCGACGATTTCGCCTGCCCATACATTGCGAGCTTGCCTAATTTCT
GCTTATTCATTATTGTTAGGTACCGCGTGGTCATATTTGGTTGCTAGGCG
ACAACCCTGAGAATTCAACGGATTCGAGAAGCTATGGAGCTGTTCCGATT
GGCCTTATTCATGGGAAAGTCTGCTTCAAGGTAAAAAGTTCTTGTCTTTC
TTCTTTGGTTGGTCCTAATCTCTCCCCAttaaactttgtattttatcGAA
AATCTGGAGTCGAAAATCAGGGTCGGGAGGAACCTTTTCGTgtcaaaaaa
ttcttgaaaaggtGTAGAAAAAGTTTGCATTTCCCTCGGAAAAactaaag
tgagggtggacgaaccaaaattacagtggaacctctaattagggGAATCG
gattagtgtccgctaattagaggtgtccgccttttggagGGTTTTGAGTT
TCaggctcaaattttgaaattaaaccGTACTAGGGGATCGCAAACATGAA
ATTATGGTTTTAGGCATTTCCCTAAAGACATAGGAGCATGAAAAGACTCG
AGAAAAGTTGTTtaattgattgttttttgttttttgtggcCCAGGAAAGC
TTGTCAACTGGGTAAAGGAAAAACTGAATCTTTGtaaacaaaatttggaa
aagaacaacaaaaaaatgcttgaaataaATGGTTTAAAATCACTTATTAC
TTGTATCTTAATGTCTGAAACTATGTTTTCCtcggtgtccgctaattgga
gggaaaaaacaggtttttgaccATTCTGAGCAAAAATATTTGTCCGCTAA
ATGGAGGTGTCcactaattgagtgtccgccttttggagacttttttataa
ggatttgactaggaaatggccggggaaaaatattttgtccgcCAATCAGA
TGTGtctgccttttagagtgtccgctAATTTGAGGTTCTACTGTAGGCTG
TAAATTATAGGATAACTTTTAGAACCCCTGGAAAATTAAATTAGGTCACT
AAAAACTCCAGAAATTACGTTGGAAAATTTACTTTattagtgaggtctgt
tagcacaaaaatacttcagatggtgattaaaacattaaatttggcacaga
tgatccttatagggtctaaaacttaattttaaacagtaacaccaaatttt
gccacctggccacctgccagatgacgtcatcaggtggcttagcaaaaatt
tatttttttgAAAATATTTAAAATCTGATGGTATCAGTGGAAAAGAGCAT
gatgtgatgacgtcatcataagcctttccaggcaaaacctaaaatcccgt
aataacggaactagttgaccaaatttagtgttttatacatgaatccatgt
caaaATTTGAAGTTCCATCTGATGCTTGGGTCTAAACAACAAaggaaggc
ttaaaacatccaaacaaattagttggttgtacactgtgctcctgaaggga
gaacgctgcgttgatttgccgtgtaaagctcaaaatctaagttttagtat
tctgtaggatttaaagcttttaattcaatttgaacatcggaatccgaaaa
agcaatgaattttgatatgaattcatgtataaaacatgaaatttggtcaa
tttgtaccaaaattacgaggtttttaagttttgcctgcaaaggcttatga
tgacgtcatcaaaaaactttcaacctccataacttttgataggaagattt
tcaaggcatgttttatacctcaatttttatcagcatttcatgctctttcc
gctggaaccatcagattttgaatattttcaaaaaaataattttttgcctg
gccacctgatgacgtcatatggtaggtggccaggtggcaaaatttggtgt
tactgtttaaaattaagttttagaccctctaaggatcatctgtgtcaaat
ttcatgctttaatcaccatctgaagtattcttacgtttttatgtgctacc
tgACCTCGCTATATTTACTTCACTCTTGGGAAAGGGATTACAGGTAGTCG
GTTGTTGgtaaaaatgcaaaaactttccttgccccctggaaattctCCTT
GGATAACCTCCTGGATTTTGTTCGTCCACCCACTGTATCGAGGAATGGAC
CATTTTACATGAGCGTAAAAAATAAATTGTGAAAAGTAACGTAACACAAA
AAGACTCTTACTATGATTTTTTTACTATGCCTTATGTTACGTAAAACAGC
TTATACAGGGGAAAAAAAATAGTGTGAGAAACGAAGTGTGTTCGGTTTCA
AATATAACACGCTCAACTTGCGCTTTAACTATAACTATGTTATGTAAAAT
AGGGAAATGCAATTGCGTAAAGGAGCAAAGTTTTATCTTAAAACAACTCT
AAAGTAGTGTGAGAAATGAAATGTGGTTTGATTCATATGTAAAATAATTC
ACACAGTGGAATACAACAATGTATACAGCCAATTCCAATACTCAAACCTA
TTCTTAAAGGACAATTGAAggatttatttttacataagtgtttccgtttt
atatcagacacatgtttagACAGTTTCTGTCTATTgctatattgtgctga
tataagcaaaaaaatgtttttcttttcctctttctgaccaatcttgctcc
acatccatgtcaattcaatatcaaaaagcttataaattaaaattgatgag
taagcaaacgatatcactcttatttaaaaacaaaacctaaaACTCCTATG
ATTGGCAACAGACTCATCATTCAACAAatttaaacttatttttttaGGTA
TGGCCAATACCGGATTTTGGATTTGTTTCTTAAAGGCGGAAAAAAAACGA
CAAGCAAATTGTGGTATGAAAACCTTTTGATGAAGTATTCCATATTATCC
TTTAATAAAAACAGATTCGTGAAAAATCGTGGAAAAGTTCCCTAGAAACA
ATTCTCTTGTCTACCTTGTCCAGTTTGCACGcaataagaaaaattatttt
gaatttgaatggaCCTTGTCAACCCTTGTCAActatttaataattttttt
gcctTTCTATCTGATGGGAAATTTGAGCAAGGATGAATTTCCAAATTATG
AATATAATCGACGAAAATTTGactaattttcaaaacatctgTAGGGAAAA
GTGACTTCTCTAAGGGATTTAAATTTTCCCAACTAGAATTTTTAAATGCT
GGCTTATTTTTCCTCATAAAGGtatatcaaattattttttattctgCTGA
ACTTTCTACAACGTGATAATGTAAACATTTTATAGATGAGATTTAAagtt
tcataatttcaaaaccATCGGAAAAACTGTTTCCATTTCCTTTACCAATC
CAATATAAGGGGAGGAAAATGGGGAAATTCTTGGTTTAGCAGCATTATAA
TGCACGGAGTGAGTATAGATGTAGGTAAGACATGTTTccgatattttttt
cgaaataagGAA

Coding sequence (CDS) from alignment at sc0000300:298418..310679+

>TCONS_00018434 ID=TCONS_00018434|Name=TCONS_00018434|organism=Clytia hemisphaerica|type=CDS|length=3006bp|location=Sequence derived from alignment at sc0000300:298418..310679+ (Clytia hemisphaerica)
tttaagataatgataaaaattacaaaaagcttGAAAAGGTTTGGTTTATT
ACTCGGCACTGGAATCAATGTGTTTTGTGTGGGACATTGTATCTTCACGT
ATGGAGCTGAGTTGACCTTCTTATCAGGCCCTTCGATGCTTCCGACCTTC
AATAAATATGGAGACGCAGACGTCGTCATCACTGAGAAGATATCTAAACG
CTCTACAGCTTCTATCAAAGTAGGAGACATAGTTATATCCAAGTCACCAA
CAAGCCCAACGAATCTTGTTTGCAAGAGAGTGGCTGCTACAGCTGGTGAT
CATGTGAGAAGTTCCCCTGAAATGTTGACACATGGCTGCCCTAAACTGTT
CGAGGTACCGCGTGGTCATATTTGGTTGCTAGGCGACAACCCTGAGAATT
CAACGGATTCGAGAAGCTATGGAGCTGTTCCGATTGGCCTTATTCATGGG
AAAGTCTGCTTCAAGGTATGGCCAATACCGGATTTTGGATTTGTTTCTTA
AtttaagataatgataaaaattacaaaaagcttGAAAAGGTTTGGTTTAT
TACTCGGCACTGGAATCAATGTGTTTTGTGTGGGACATTGTATCTTCACG
TATGGAGCTGAGTTGACCTTCTTATCAGGCCCTTCGATGCTTCCGACCTT
CAATAAATATGGAGACGCAGACGTCGTCATCACTGAGAAGATATCTAAAC
GCTCTACAGCTTCTATCAAAGTAGGAGACATAGTTATATCCAAGTCACCA
ACAAGCCCAACGAATCTTGTTTGCAAGAGAGTGGCTGCTACAGCTGGTGA
TCATGTGAGAAGTTCCCCTGAAATGTTGACACATGGCTGCCCTAAACTGT
TCGAGGTACCGCGTGGTCATATTTGGTTGCTAGGCGACAACCCTGAGAAT
TCAACGGATTCGAGAAGCTATGGAGCTGTTCCGATTGGCCTTATTCATGG
GAAAGTCTGCTTCAAGGTATGGCCAATACCGGATTTTGGATTTGTTTCTT
AAtttaagataatgataaaaattacaaaaagcttGAAAAGGTTTGGTTTA
TTACTCGGCACTGGAATCAATGTGTTTTGTGTGGGACATTGTATCTTCAC
GTATGGAGCTGAGTTGACCTTCTTATCAGGCCCTTCGATGCTTCCGACCT
TCAATAAATATGGAGACGCAGACGTCGTCATCACTGAGAAGATATCTAAA
CGCTCTACAGCTTCTATCAAAGTAGGAGACATAGTTATATCCAAGTCACC
AACAAGCCCAACGAATCTTGTTTGCAAGAGAGTGGCTGCTACAGCTGGTG
ATCATGTGAGAAGTTCCCCTGAAATGTTGACACATGGCTGCCCTAAACTG
TTCGAGGTACCGCGTGGTCATATTTGGTTGCTAGGCGACAACCCTGAGAA
TTCAACGGATTCGAGAAGCTATGGAGCTGTTCCGATTGGCCTTATTCATG
GGAAAGTCTGCTTCAAGGTATGGCCAATACCGGATTTTGGATTTGTTTCT
TAAtttaagataatgataaaaattacaaaaagcttGAAAAGGTTTGGTTT
ATTACTCGGCACTGGAATCAATGTGTTTTGTGTGGGACATTGTATCTTCA
CGTATGGAGCTGAGTTGACCTTCTTATCAGGCCCTTCGATGCTTCCGACC
TTCAATAAATATGGAGACGCAGACGTCGTCATCACTGAGAAGATATCTAA
ACGCTCTACAGCTTCTATCAAAGTAGGAGACATAGTTATATCCAAGTCAC
CAACAAGCCCAACGAATCTTGTTTGCAAGAGAGTGGCTGCTACAGCTGGT
GATCATGTGAGAAGTTCCCCTGAAATGTTGACACATGGCTGCCCTAAACT
GTTCGAGGTACCGCGTGGTCATATTTGGTTGCTAGGCGACAACCCTGAGA
ATTCAACGGATTCGAGAAGCTATGGAGCTGTTCCGATTGGCCTTATTCAT
GGGAAAGTCTGCTTCAAGGTATGGCCAATACCGGATTTTGGATTTGTTTC
TTAAtttaagataatgataaaaattacaaaaagcttGAAAAGGTTTGGTT
TATTACTCGGCACTGGAATCAATGTGTTTTGTGTGGGACATTGTATCTTC
ACGTATGGAGCTGAGTTGACCTTCTTATCAGGCCCTTCGATGCTTCCGAC
CTTCAATAAATATGGAGACGCAGACGTCGTCATCACTGAGAAGATATCTA
AACGCTCTACAGCTTCTATCAAAGTAGGAGACATAGTTATATCCAAGTCA
CCAACAAGCCCAACGAATCTTGTTTGCAAGAGAGTGGCTGCTACAGCTGG
TGATCATGTGAGAAGTTCCCCTGAAATGTTGACACATGGCTGCCCTAAAC
TGTTCGAGGTACCGCGTGGTCATATTTGGTTGCTAGGCGACAACCCTGAG
AATTCAACGGATTCGAGAAGCTATGGAGCTGTTCCGATTGGCCTTATTCA
TGGGAAAGTCTGCTTCAAGGTATGGCCAATACCGGATTTTGGATTTGTTT
CTTAAtttaagataatgataaaaattacaaaaagcttGAAAAGGTTTGGT
TTATTACTCGGCACTGGAATCAATGTGTTTTGTGTGGGACATTGTATCTT
CACGTATGGAGCTGAGTTGACCTTCTTATCAGGCCCTTCGATGCTTCCGA
CCTTCAATAAATATGGAGACGCAGACGTCGTCATCACTGAGAAGATATCT
AAACGCTCTACAGCTTCTATCAAAGTAGGAGACATAGTTATATCCAAGTC
ACCAACAAGCCCAACGAATCTTGTTTGCAAGAGAGTGGCTGCTACAGCTG
GTGATCATGTGAGAAGTTCCCCTGAAATGTTGACACATGGCTGCCCTAAA
CTGTTCGAGGTACCGCGTGGTCATATTTGGTTGCTAGGCGACAACCCTGA
GAATTCAACGGATTCGAGAAGCTATGGAGCTGTTCCGATTGGCCTTATTC
ATGGGAAAGTCTGCTTCAAGGTATGGCCAATACCGGATTTTGGATTTGTT
TCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010340XLOC_010340Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018434-proteinTCONS_00018434-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018434-exon-sc0000300-1491911889:298418..298537TCONS_00018434-exon-sc0000300-1491911889:298418..298537Clytia hemisphaericaexon
TCONS_00018434-exon-sc0000300-1510915933:298418..298537TCONS_00018434-exon-sc0000300-1510915933:298418..298537Clytia hemisphaericaexon
TCONS_00018434-exon-sc0000300-1575043694:298418..298537TCONS_00018434-exon-sc0000300-1575043694:298418..298537Clytia hemisphaericaexon
TCONS_00018434-exon-sc0000300-1491911889:298861..298961TCONS_00018434-exon-sc0000300-1491911889:298861..298961Clytia hemisphaericaexon
TCONS_00018434-exon-sc0000300-1510915933:298861..298961TCONS_00018434-exon-sc0000300-1510915933:298861..298961Clytia hemisphaericaexon
TCONS_00018434-exon-sc0000300-1575043694:298861..298961TCONS_00018434-exon-sc0000300-1575043694:298861..298961Clytia hemisphaericaexon
TCONS_00018434-exon-sc0000300-1491911889:299493..299562TCONS_00018434-exon-sc0000300-1491911889:299493..299562Clytia hemisphaericaexon
TCONS_00018434-exon-sc0000300-1510915933:299493..299562TCONS_00018434-exon-sc0000300-1510915933:299493..299562Clytia hemisphaericaexon
TCONS_00018434-exon-sc0000300-1575043694:299493..299562TCONS_00018434-exon-sc0000300-1575043694:299493..299562Clytia hemisphaericaexon
TCONS_00018434-exon-sc0000300-1491911889:300007..300069TCONS_00018434-exon-sc0000300-1491911889:300007..300069Clytia hemisphaericaexon
TCONS_00018434-exon-sc0000300-1510915933:300007..300069TCONS_00018434-exon-sc0000300-1510915933:300007..300069Clytia hemisphaericaexon
TCONS_00018434-exon-sc0000300-1575043694:300007..300069TCONS_00018434-exon-sc0000300-1575043694:300007..300069Clytia hemisphaericaexon
TCONS_00018434-exon-sc0000300-1491911889:307337..307447TCONS_00018434-exon-sc0000300-1491911889:307337..307447Clytia hemisphaericaexon
TCONS_00018434-exon-sc0000300-1510915933:307337..307447TCONS_00018434-exon-sc0000300-1510915933:307337..307447Clytia hemisphaericaexon
TCONS_00018434-exon-sc0000300-1575043694:307337..307447TCONS_00018434-exon-sc0000300-1575043694:307337..307447Clytia hemisphaericaexon
TCONS_00018434-exon-sc0000300-1491911889:310015..310679TCONS_00018434-exon-sc0000300-1491911889:310015..310679Clytia hemisphaericaexon
TCONS_00018434-exon-sc0000300-1510915933:310015..310679TCONS_00018434-exon-sc0000300-1510915933:310015..310679Clytia hemisphaericaexon
TCONS_00018434-exon-sc0000300-1575043694:310015..310679TCONS_00018434-exon-sc0000300-1575043694:310015..310679Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000300supercontigsc0000300:298418..310679 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.5178	32.4552	36.7241	36.7395	11.6882	8.33308	7.57728	9.22652	7.62829	6.35286	6.94678	5.36183	2.25448	2.23487	5.00902	5.02334	11.6248	11.4112	1.5151	1.62829	6.89017	6.9759	17.1811	13.8131	5.25249	8.52648	4.64814	3.49498	8.38002	8.45079
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000223Pept_S26A_signal_pept_1
IPR015927Peptidase_S24_S26A/B/C
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0008236serine-type peptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0016020 membrane
molecular_function GO:0008236 serine-type peptidase activity
Blast
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BLAST of TCONS_00018434 vs. Swiss-Prot (Human)
Match: IMP1L (Mitochondrial inner membrane protease subunit 1 OS=Homo sapiens GN=IMMP1L PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.422e-35
Identity = 69/153 (45.10%), Postives = 92/153 (60.13%), Query Frame = 1 
Query:   49 LLGTGINVFCVGHCIFTYGAELTFLSGPSMLPTFNKYGDADVVITEKISKRSTASIKVGDIVISKSPTSPTNLVCKRVAATAGDHVRSSPEMLTHGCPKLFE----VPRGHIWLLGDNPENSTDSRSYGAVPIGLIHGKVCFKVWPIPDFGFV 495
            L+G  I   C+ HC F Y   +   SGPSM PT     ++D+V  E +S R    I+ GDIVI+KSP+ P + +CKRV    GD      ++LT      F+    VP GH+WL GDN +NSTDSR YG +P GLI G++ FK+WP+ DFGF+
Sbjct:   12 LVGYTIQYGCIAHCAFEYVGGVVMCSGPSMEPTIQ---NSDIVFAENLS-RHFYGIQRGDIVIAKSPSDPKSNICKRVIGLEGD------KILTTSPSDFFKSHSYVPMGHVWLEGDNLQNSTDSRCYGPIPYGLIRGRIFFKIWPLSDFGFL 154
The following BLAST results are available for this feature:
BLAST of TCONS_00018434 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IMP1L1.422e-3545.10Mitochondrial inner membrane protease subunit 1 OS... [more]
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