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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018409 ID=TCONS_00018409|Name=TCONS_00018409|organism=Clytia hemisphaerica|type=transcript|length=2645bp
Tgatttaaatgtattttttacttatttttattcggtcattttttataaaa
cattttacaatttttttgggtgtttaaaataaaacttttctatgtattTT
ATATATGGTGATAGCATCAAGCTATCTGTTTTAAGGGTTTTGTTTTAAGT
GTTAGTcacaacttttcaaaaaataagtattaaaataaaactaaaataaa
accaaaaaaatagtTCTAGAACACGAAAAATATGTAAAGCAATTACTATG
CAAAGATACAGTTAAAAACAGTACAAGATTAATTCTATGTGATGTAACAT
GTTTCAAGCATacaaaaaaccttgaaagtcAAGTCATATTTCATGTCAGG
GATTTGTTCCGAATTTCGAAATGTTAGAAAAGTAAACAGAAAAATCTTTC
CCATTTGAGACGTGAAATGGACAAACGTGAATGACGTGGACAGACGCACT
TTAACAAATTATCATTGCAAAGAAAGACTTTACTTTCAGATTGTCATATC
ACATAtgataaaaaattccttccAAATAAAAGAGTTAGCGAAACCACCAA
ATAGTTCGACCTACTCTTAACTTGAAATTCTAATATATATAatgttcctt
tttttctttttttcctaaagaatctttaaaatatataataaagatCGTTT
TTATCTAATATCAAATTCTATAAAGCGCATAACAGAGCGCtacaaaaagt
taaaatgtaataaatgtGTCATTAAAGGTAGCAATGGAAAAAATTAACCC
CCTTTCAGAATCACGATTACTAATGACAGGCACTGATGATTTGTTATTTA
TGGCCACTTCCAAATTGCAGATATAATTATGCTGTAGTATGCACTAAGAA
AAAGCATCAACAATTAAAAGCAGCAAATCTATTCCAGTAAGCACAAAACA
ACCTTCACATTTTTAGTTGCACACATTATTTAACAAACTTTGAAAACACA
AGCAGAATATCTCAAAACACTTAgactaaaaattctttttttatatgtaC
AAAAATATAGATAGGTCAGAAAATAAACTGTTTAATTTTAAAAGAGGGCA
AAACCAAAAGGAAAAAATTAAGATTGTTCTTAAGCCAAAGGCCTTGAACA
CCCTAGGTTGGTATGAGAAGCAAATCAACAAGACTGTAAAGATTTCGAAT
GGCGCGATGAAGTGTTCTTCCACTGTCTCCCATTCACAACAAAAAATTCG
TTGACAGATGCCATTTGTCTCATGTTGTAATGGCGTTGATGTGGAATGTT
GTATGATGAATGTTGAACATACGAGGGAACAGGGTAATATACTGTGATTG
GTTGATGATAGTTCGTTTGGTGAATCATTTGATTACACATATCTTGGATC
ATTCTTAGTGTTTGCCGGCGTTCATGTCCCATCAAGCAAACAGTAGAGTT
CTCAACGACACTGTGTAAAATTGTCAAGTATTTGTATCTGTTCTCAAGTG
AGCAATGGCTGTTCAAATAGCCATCTAGGGTATGTTGCTGAACAAGGATg
tctttaaaatcaatgaaaaaacgACTGCACATGTATTTTTCCATGGAAGT
TATGCCATCTGATGCAGGTTGGAACCCACAGCAAAGTAAATAACAGTACT
TTAACAAACCTCCACCCCTGATCTCTTCAGGACTGATGGTTGCAATAAGT
TTATTTGAAAGGTGGTATCTAGCTTCTTCGAAATCTCCATAAACCGATTC
AGCCAACACAGTTGGAAACAATGTCTCAGACATTGTTATGTCAGATGGAA
GGTCATAGAATTTTATCAGAGAGTCCAGAATAATTTGAAATGAATCAACa
gaaaactgaaattttcgTTTCATGGTATCGACAAACTTAAGTTCAATATC
ACAACCTTCTTGATTAGTTAATGAAATCAGGGACCACGTATCTTGTTTAT
TTACGACTTTTACCATTTTCTTTACATATGCTTCCTTCATGGTTAAACTC
GATATCCTCTCCTTGGAAACTTCTCCCGGAAAAAACTCCATGAGAGTATT
TAAAACGCAGTCCTTAATCTGGGTAAAACAAGAATCTGAAGGTATGCTCA
CGTTAAAGATAAGGTCCAAATCATTGTACGAATTATCCTGGTTGTCTTCA
TCTTGTTTCAGGTTCAAAACATGGCTAGCAGCTCCACCATTTACACGGTA
ATCTGCTATGGAAATGTTCGATTCGGTTAGTTTTGCTATCAAgagtttta
tgaatttttttggtTGCACTTCGATCGTTGGAAAATTACCTCTACCATGA
ATTTGAATGATATCTGCCAGAACAGCATCGAGTCGTGAGACTTCCTCAAA
AGTAAGAGTGTGCATGGTGATTGTTGTAAGTCTTGTGTTGAGTAAAAAGT
TTAAGATATGTGAGAATTTTAaatgtaaaattgaaaaattcaaaaaaaaa
cttgatcCACAACAACTAAGACTGACTGCAGTGATCAGAAAATCAGCTGA
AGTGATCGTTTCTCTATAGTCGATCTAGATTTGTAAATGTGAACTAGATA
ACTAGAGCTCATTCttcttaaatatagcttttcatTGGCCAATTTCCTGT
CGTTGCTGGGGAATTCACTGGAAATTTATTCGCCCTACCACGCACTGTCC
GAAAGACGTACTTTGCTTTTACTTTGGATCGAAATATGGTGAGTG Run BLAST on NCBI protein sequence of TCONS_00018409-protein >TCONS_00018409-protein ID=TCONS_00018409-protein|Name=TCONS_00018409-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp
MHTLTFEEVSRLDAVLADIIQIHGRGNFPTIEVQPKKFIKLLIAKLTESN
ISIADYRVNGGAASHVLNLKQDEDNQDNSYNDLDLIFNVSIPSDSCFTQI
KDCVLNTLMEFFPGEVSKERISSLTMKEAYVKKMVKVVNKQDTWSLISLT
NQEGCDIELKFVDTMKRKFQFSVDSFQIILDSLIKFYDLPSDITMSETLF
PTVLAESVYGDFEEARYHLSNKLIATISPEEIRGGGLLKYCYLLCCGFQP
ASDGITSMEKYMCSRFFIDFKDILVQQHTLDGYLNSHCSLENRYKYLTIL
HSVVENSTVCLMGHERRQTLRMIQDMCNQMIHQTNYHQPITVYYPVPSYV
QHSSYNIPHQRHYNMRQMASVNEFFVVNGRQWKNTSSRHSKSLQSC Run BLAST on NCBI transcript from alignment at sc0000297:251822..254466 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018409 ID=TCONS_00018409|Name=TCONS_00018409|organism=Clytia hemisphaerica|type=transcript|length=2645bp|location=Sequence derived from alignment at sc0000297:251822..254466 (Clytia hemisphaerica)
CACTCACCATATTTCGATCCAAAGTAAAAGCAAAGTACGTCTTTCGGACA
GTGCGTGGTAGGGCGAATAAATTTCCAGTGAATTCCCCAGCAACGACAGG
AAATTGGCCAatgaaaagctatatttaagaaGAATGAGCTCTAGTTATCT
AGTTCACATTTACAAATCTAGATCGACTATAGAGAAACGATCACTTCAGC
TGATTTTCTGATCACTGCAGTCAGTCTTAGTTGTTGTGgatcaagttttt
ttttgaatttttcaattttacattTAAAATTCTCACATATCTTAAACTTT
TTACTCAACACAAGACTTACAACAATCACCATGCACACTCTTACTTTTGA
GGAAGTCTCACGACTCGATGCTGTTCTGGCAGATATCATTCAAATTCATG
GTAGAGGTAATTTTCCAACGATCGAAGTGCAaccaaaaaaattcataaaa
ctcTTGATAGCAAAACTAACCGAATCGAACATTTCCATAGCAGATTACCG
TGTAAATGGTGGAGCTGCTAGCCATGTTTTGAACCTGAAACAAGATGAAG
ACAACCAGGATAATTCGTACAATGATTTGGACCTTATCTTTAACGTGAGC
ATACCTTCAGATTCTTGTTTTACCCAGATTAAGGACTGCGTTTTAAATAC
TCTCATGGAGTTTTTTCCGGGAGAAGTTTCCAAGGAGAGGATATCGAGTT
TAACCATGAAGGAAGCATATGTAAAGAAAATGGTAAAAGTCGTAAATAAA
CAAGATACGTGGTCCCTGATTTCATTAACTAATCAAGAAGGTTGTGATAT
TGAACTTAAGTTTGTCGATACCATGAAAcgaaaatttcagttttctGTTG
ATTCATTTCAAATTATTCTGGACTCTCTGATAAAATTCTATGACCTTCCA
TCTGACATAACAATGTCTGAGACATTGTTTCCAACTGTGTTGGCTGAATC
GGTTTATGGAGATTTCGAAGAAGCTAGATACCACCTTTCAAATAAACTTA
TTGCAACCATCAGTCCTGAAGAGATCAGGGGTGGAGGTTTGTTAAAGTAC
TGTTATTTACTTTGCTGTGGGTTCCAACCTGCATCAGATGGCATAACTTC
CATGGAAAAATACATGTGCAGTcgttttttcattgattttaaagacATCC
TTGTTCAGCAACATACCCTAGATGGCTATTTGAACAGCCATTGCTCACTT
GAGAACAGATACAAATACTTGACAATTTTACACAGTGTCGTTGAGAACTC
TACTGTTTGCTTGATGGGACATGAACGCCGGCAAACACTAAGAATGATCC
AAGATATGTGTAATCAAATGATTCACCAAACGAACTATCATCAACCAATC
ACAGTATATTACCCTGTTCCCTCGTATGTTCAACATTCATCATACAACAT
TCCACATCAACGCCATTACAACATGAGACAAATGGCATCTGTCAACGAAT
TTTTTGTTGTGAATGGGAGACAGTGGAAGAACACTTCATCGCGCCATTCG
AAATCTTTACAGTCTTGTTGATTTGCTTCTCATACCAACCTAGGGTGTTC
AAGGCCTTTGGCTTAAGAACAATCTTAATTTTTTCCTTTTGGTTTTGCCC
TCTTTTAAAATTAAACAGTTTATTTTCTGACCTATCTATATTTTTGtaca
tataaaaaaagaatttttagtcTAAGTGTTTTGAGATATTCTGCTTGTGT
TTTCAAAGTTTGTTAAATAATGTGTGCAACTAAAAATGTGAAGGTTGTTT
TGTGCTTACTGGAATAGATTTGCTGCTTTTAATTGTTGATGCTTTTTCTT
AGTGCATACTACAGCATAATTATATCTGCAATTTGGAAGTGGCCATAAAT
AACAAATCATCAGTGCCTGTCATTAGTAATCGTGATTCTGAAAGGGGGTT
AATTTTTTCCATTGCTACCTTTAATGACacatttattacattttaacttt
ttgtaGCGCTCTGTTATGCGCTTTATAGAATTTGATATTAGATAAAAACG
atctttattatatattttaaagattctttaggaaaaaaagaaaaaaagga
acatTATATATATTAGAATTTCAAGTTAAGAGTAGGTCGAACTATTTGGT
GGTTTCGCTAACTCTTTTATTTggaaggaattttttatcaTATGTGATAT
GACAATCTGAAAGTAAAGTCTTTCTTTGCAATGATAATTTGTTAAAGTGC
GTCTGTCCACGTCATTCACGTTTGTCCATTTCACGTCTCAAATGGGAAAG
ATTTTTCTGTTTACTTTTCTAACATTTCGAAATTCGGAACAAATCCCTGA
CATGAAATATGACTTgactttcaaggttttttgtATGCTTGAAACATGTT
ACATCACATAGAATTAATCTTGTACTGTTTTTAACTGTATCTTTGCATAG
TAATTGCTTTACATATTTTTCGTGTTCTAGAactatttttttggttttat
tttagttttattttaatacttattttttgaaaagttgtgACTAACACTTA
AAACAAAACCCTTAAAACAGATAGCTTGATGCTATCACCATATATAAaat
acatagaaaagttttattttaaacacccaaaaaaattgtaaaatgtttta
taaaaaatgaccgaataaaaataagtaaaaaatacatttaaatcA Coding sequence (CDS) from alignment at sc0000297:251822..254466 >TCONS_00018409 ID=TCONS_00018409|Name=TCONS_00018409|organism=Clytia hemisphaerica|type=CDS|length=1191bp|location=Sequence derived from alignment at sc0000297:251822..254466 (Clytia hemisphaerica)
ATGCACACTCTTACTTTTGAGGAAGTCTCACGACTCGATGCTGTTCTGGC
AGATATCATTCAAATTCATGGTAGAGGTAATTTTCCAACGATCGAAGTGC
AaccaaaaaaattcataaaactcTTGATAGCAAAACTAACCGAATCGAAC
ATTTCCATAGCAGATTACCGTGTAAATGGTGGAGCTGCTAGCCATGTTTT
GAACCTGAAACAAGATGAAGACAACCAGGATAATTCGTACAATGATTTGG
ACCTTATCTTTAACGTGAGCATACCTTCAGATTCTTGTTTTACCCAGATT
AAGGACTGCGTTTTAAATACTCTCATGGAGTTTTTTCCGGGAGAAGTTTC
CAAGGAGAGGATATCGAGTTTAACCATGAAGGAAGCATATGTAAAGAAAA
TGGTAAAAGTCGTAAATAAACAAGATACGTGGTCCCTGATTTCATTAACT
AATCAAGAAGGTTGTGATATTGAACTTAAGTTTGTCGATACCATGAAAcg
aaaatttcagttttctGTTGATTCATTTCAAATTATTCTGGACTCTCTGA
TAAAATTCTATGACCTTCCATCTGACATAACAATGTCTGAGACATTGTTT
CCAACTGTGTTGGCTGAATCGGTTTATGGAGATTTCGAAGAAGCTAGATA
CCACCTTTCAAATAAACTTATTGCAACCATCAGTCCTGAAGAGATCAGGG
GTGGAGGTTTGTTAAAGTACTGTTATTTACTTTGCTGTGGGTTCCAACCT
GCATCAGATGGCATAACTTCCATGGAAAAATACATGTGCAGTcgtttttt
cattgattttaaagacATCCTTGTTCAGCAACATACCCTAGATGGCTATT
TGAACAGCCATTGCTCACTTGAGAACAGATACAAATACTTGACAATTTTA
CACAGTGTCGTTGAGAACTCTACTGTTTGCTTGATGGGACATGAACGCCG
GCAAACACTAAGAATGATCCAAGATATGTGTAATCAAATGATTCACCAAA
CGAACTATCATCAACCAATCACAGTATATTACCCTGTTCCCTCGTATGTT
CAACATTCATCATACAACATTCCACATCAACGCCATTACAACATGAGACA
AATGGCATCTGTCAACGAATTTTTTGTTGTGAATGGGAGACAGTGGAAGA
ACACTTCATCGCGCCATTCGAAATCTTTACAGTCTTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018409-exon-sc0000297-1491911889:251822..254466 | TCONS_00018409-exon-sc0000297-1491911889:251822..254466 | Clytia hemisphaerica | exon |
| TCONS_00018409-exon-sc0000297-1510915933:251822..254466 | TCONS_00018409-exon-sc0000297-1510915933:251822..254466 | Clytia hemisphaerica | exon |
| TCONS_00018409-exon-sc0000297-1575043694:251822..254466 | TCONS_00018409-exon-sc0000297-1575043694:251822..254466 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000297 | supercontig | sc0000297:251822..254466 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012937 | DUF1693 |
Blast
BLAST of TCONS_00018409 vs. Swiss-Prot (Human)
Match: FA46A (Protein FAM46A OS=Homo sapiens GN=FAM46A PE=1 SV=2) HSP 1 Score: 342.813 bits (878), Expect = 1.091e-107 Identity = 191/358 (53.35%), Postives = 253/358 (70.67%), Query Frame = -1
Query: 1248 FEEVSRLDAVLADIIQIHGRGNFPTIEVQPKKFIKLLIAKLTESNISIADYRVNGGAASHVLNLKQDEDNQDNS--YNDLDLIFNVSIPSDSCFTQIKDCVLNTLMEFFPGEVSKERISSLTMKEAYVKKMVKVVNKQDTWSLISLTNQEGCDIELKFVDTMKRKFQFSVDSFQIILDSLIKFYDLPSDITMSETLFPTVLAESVYGDFEEARYHLSNKLIATISPEEIRXXXXXXXXXXXXXGFQPASDGITSMEKYMCSRFFIDFKDILVQQHTLDGYLNSH-CSLENR-YKYLTILHSVVENSTVCLMGHERRQTLRMIQDMCNQMIHQTNY---HQPITVYYPVPSYVQHSSYN 2300
+E+V RLD +L++ I IHGRGNFPT+E+QP +K++ +L E I + D R+NG AASHVL+ QD+ Y DLDLIF + + F +KD VL+ L++F P V+KE+I+ LT+KEAYV+KMVKV N D WSLISL+N G ++ELKFVD+++R+F+FSVDSFQI LDSL+ FY+ S+ M+ET PT++ ESVYGDF+EA HL NK+IAT +PEEIRGGGLLKYC LL GF+PASD I ++++YMCSRFFIDF DI QQ L+ YL +H LE+R Y+YL LH VV STVCLMGHERRQTL +I + +++ N +T YY YV ++++
Sbjct: 68 WEQVQRLDGILSETIPIHGRGNFPTLELQPSLIVKVVRRRLAEKRIGVRDVRLNGSAASHVLH-------QDSGLGYKDLDLIFCADLRGEGEFQTVKDVVLDCLLDFLPEGVNKEKITPLTLKEAYVQKMVKVCNDSDRWSLISLSNNSGKNVELKFVDSLRRQFEFSVDSFQIKLDSLLLFYEC-SENPMTETFHPTIIGESVYGDFQEAFDHLCNKIIATRNPEEIRGGGLLKYCNLLVRGFRPASDEIKTLQRYMCSRFFIDFSDIGEQQRKLESYLQNHFVGLEDRKYEYLMTLHGVVNESTVCLMGHERRQTLNLITMLAIRVLADQNVIPNVANVTCYYQPAPYVADANFS 417
The following BLAST results are available for this feature:
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