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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017841 ID=TCONS_00017841|Name=TCONS_00017841|organism=Clytia hemisphaerica|type=transcript|length=2840bp
TAGATATGTCTGGATAGGTTCAACCAACATCCTCAGAAATATGATTCTTT
TGTCCGTCCTTAACTCATTAATCTGTTAAAGaattttcaatctttcaatt
aatttacactttcactttcagcaaGATCAAACAAATTAAGCAACAACAAA
GCCAAAGGAACAATAAGTTCTCATCGAAATGGGAAAATGTGTGACAGTGT
TTTGGGTCGTTTTGACCATACTTTTCACATTAGCAATTTGTTTTTCATTC
GTCTCGCCTgtttggtttcaaaacgaggctgaactCAAACAGGTGGTCGG
GCAATCGAGGCAAATCTCCAATCAGTATGATCCAGTCGCATTAGGAATGA
TACGATTCTGTCACCGTTATCAGCTATCACAGGCTATTCAGAAATGTGGA
TTTTTCACTAGCCTGAAAGACATGCCAAGTATAGCCTGGATGGTCAGTGC
AATTATTTATGCGATTGGATGTGTGTTTTTTATCGTATCTGTCATCATGG
CGTTCATATCAATTTGTACGAAAAGATCGATGAGCGATAAATTGAAAGTT
GCAACAGCATACATTCAAGTTATCGGAGTTGGATTCCTGGCTATCGCTGT
ACTCATCTTTCCGCTCGGGCTTGATTCCTCGTTCGCCCGTGACGTGTGCG
GTCTAGAAGCAAAGATGTTTGTATCAGGTGAATGTCAAGTAGCTTGGGGA
TACGTTCTTGCTATCATGTCCGTATCCTTGACGATATTTTGTCCCATATT
GGCAAAATATTCGACAGAGAATAAAGAGACTTATCGACAGGGGATTGGGA
CTGGGACGTACTCGGAGTATGATTACCAAAAGAGTGAGGTCATCTCCTTG
ACAACCAGTAGTACAAGCACCAGAAGTAAAGTCATGACGACTGTATAATA
GTTGCCAAGACAGTTTCGGTGTCGTTGGATATGGTTGGTAAGAAAGACTT
AAGAACGGCCGAAGTCTTCAAGAATTTGGCGTTCTCTTTCGTGTAGCGAA
ATTTGGTTTGTCAAGTCAAGGACAATACACTGATCAACCCTGAAAGTATG
GATAGTCTGAAGTCTGAGGTCGTTGCATTGCATTGATTTTATGGTGGAGT
TTTGATACCGTTTCGAAGAAAAGATACATTCTGTCAAGCCTAGGTCCTTT
GTACCAAGCCAAGACTCTTGAATACCAACTGAGTTGGTATCAAAAAGTGA
TATTAATGAACCTGCTCTATGGGAGTTATCAAATGTAACAGAACTGACAA
GAGTTGCTTCTGGTGTCtagtttaaaaaatataaacatataTATGATATG
AACTTTATTTTGCATATTGGACATGAGTCGAATATGAAATCCTCTGGTTC
AATTATCGATAAAAAGTTTTGCTTTCGGTTTCAGTAATTACTACAGTTTT
AAGTAGACGAAAACTCGAGAGGCAAGAACGAGCCAGAATAGTGTTTTTAA
ATATACTTTCTATTTTCCATTTAGCTTGTTgctaaccctttaagtgccaa
tgtcgtatatatcagacatgggctatgtaggagggcgagattttaagcca
aaaagtcaaaaaaatgcaaaaatttgacaaaaatccacttttttccgatt
ttgaccgttttttgagcatttttggtcaacgagtgatccaagaacctcca
aatttggccctcctttacttgattctgtcctccagcaaattaatttgaag
ttttaccactggtcacttttctatcattcaggcaggtccacGCAGCGTGG
CACTTAAAGGAATAAATATAATATTCCTTTTGTTCTAGATAGCTTAAAAT
TTTACCATgtaaaaacttttatcaaacgaaaaaagaaaaactaaatcaTT
ATTTAAGAACATCTTACAGTCGCACTTTCTTAAAACCTTAAATTTTCGCG
GCTCCGAATAAATCAACTCGCCAATTTCGTTTAACTTGGTGGAATTCTTT
TCGCCGATTgagaaaaactttaaatttagCGAGAATTGATTTGGCAAATG
AACAGAAACTCGAAACTTGGTAAATATGTTTGAGGAAATTCGCCGAATTT
GCCAAATATTCTGTGAATTACTCAATCCATGACGTAAGTAAAAGAATCAG
GAAAGAAATATAAGATTGAACCGACATAGCGGGGAAAGCACATTAATTTT
TAACGATTGAtccctggacatttcgatttgTCACCCCATTTACCATAAAA
TTGACTAAATGCCAACAGACTCGCGCAGGGACTTTTACAGGagtaatcgc
acgatgggttattttttcttatttggcacgccctcaaagagagcaattaa
tcgttaatcacactctccaatgccgcgccaatgtttacaaaattgatttt
aatgtcttttgttacattttttttgcatcgaacgttttaattgcattcga
aatttattttgtgagaaagaaaatcaaaaaacaacactaaaagaaagaca
taaagagaagagaaaaagacaaaactctcagtgtaatttctctaatttac
tTTCCTTACTGGGAAAAGTAGTGACAGTCATTGTGcaattagctcgtaat
cacataataattcgtacaattcgaaaattgcactcgtgatttttttgttt
caaattttcctcgtcctttcggactcggaaaattaataacaaaaaaatca
ctcgtgcaattatattcgaattgcactcgttatcatgtgattacatatac
taatcgcacgatgggttattttttcttatttggcacgccctcaaagagag
caattaatcgttaatcacactcttcaatgcggcgccaatgtttacaaaat
tgattttaatgttttttcttacattctttttgcatcgaac Run BLAST on NCBI protein sequence of TCONS_00017841-protein >TCONS_00017841-protein ID=TCONS_00017841-protein|Name=TCONS_00017841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
MGKCVTVFWVVLTILFTLAICFSFVSPVWFQNEAELKQVVGQSRQISNQY
DPVALGMIRFCHRYQLSQAIQKCGFFTSLKDMPSIAWMVSAIIYAIGCVF
FIVSVIMAFISICTKRSMSDKLKVATAYIQVIGVGFLAIAVLIFPLGLDS
SFARDVCGLEAKMFVSGECQVAWGYVLAIMSVSLTIFCPILAKYSTENKE
TYRQGIGTGTYSEYDYQKSEVISLTTSSTSTRSKVMTTV Run BLAST on NCBI transcript from alignment at sc0000278:199455..202971+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017841 ID=TCONS_00017841|Name=TCONS_00017841|organism=Clytia hemisphaerica|type=transcript|length=3517bp|location=Sequence derived from alignment at sc0000278:199455..202971+ (Clytia hemisphaerica)
TAGATATGTCTGGATAGGTTCAACCAACATCCTCAGAAATATGATTCTTT
TGTCCGTCCTTAACTCATTAATCTGTTAAAGaattttcaatctttcaatt
aatttacactttcactttcagcaaGATCAAACAAATTAAGCAACAACAAA
GCCAAAGGAACAATAAGTTCTCATCGAAATGGGAAAATGTGTGACAGTGT
TTTGGGTCGTTTTGACCATACTTTTCACATTAGCAATTTGTTTTTCATTC
GTCTCGCCTgtttggtttcaaaacgaggctgaactCAAACAGGTGGTCGG
GCAATCGAGGCAAATCTCCAATCAGTATGATCCAGTCGCATTAGGAATGA
TACGATTCTGTCACCGTTATCAGCTATCACAGGCTATTCAGAAATGTGGA
TTTTTCACTAGCCTGAAAGACATGCCAAGTATAGCCTGGATGGTCAGTGC
AATTATTTATGCGATTGGATGTGTGTTTTTTATCGTATCTGTCATCATGG
CGTTCATATCAATTTGTACGAAAAGATCGATGAGCGATAAATTGAAAGTT
GCAACAGCATACATTCAAGTTATCGGAGGTCAGTAATCTATTGAATCAGG
AAGGCTCCAAAACTTTGAAAAGGGCTACGAACAATCGTGAATAATAAGGT
Caattcgggggggggggggtactacggaatttttttttcttgaaactaaa
aaattttctctaaaaacCGTGGGTTTTCCGGGGGGTTAATCATTTGAAGA
TTTCACTGGTTTTGTTAGAAAAATGCCCTTTTTAAATGATTTCCACACGC
TAGTTCATCACCTTTTGAGAATTTAAAACGTTGAAGAAAGTGCTTTTTCG
AAACCAAAATCATTCTCTCTAAcgatttaagaacattcttttaaaaacat
tacgaaaacatttttttttgcttaaatccaAAAAAGTTGTCTAGCGGAAT
TTTGGCTTGTTATCCGAGAGATTCAAAATGAGCAAAATGTTAAAGCTGAA
AGCTGAAAGGAATGGAGTTGTTCAACAATTTTAAGTTCATAATTTATTAA
TTCTAACATTCAAATATCTATTATCTTAAATATACAATTCTTAGAAATCT
TTACAAAAAAGATAGATAACATTAAAGGAGACTTACTAAGTGATGGTGTT
TCAACCCATTTGATGAACGAGCTTTTTCAGCCTCTCACATTATCGCCATC
TTATTACGTGAAAAGGAACACTTGCAACAAACATacattttctcttcttt
tctagTTGGATTCCTGGCTATCGCTGTACTCATCTTTCCGCTCGGGCTTG
ATTCCTCGTTCGCCCGTGACGTGTGCGGTCTAGAAGCAAAGATGTTTGTA
TCAGGTGAATGTCAAGTAGCTTGGGGATACGTTCTTGCTATCATGTCCGT
ATCCTTGACGATATTTTGTCCCATATTGGCAAAATATTCGACAGAGAATA
AAGAGACTTATCGACAGGGGATTGGGACTGGGACGTACTCGGAGTATGAT
TACCAAAAGAGTGAGGTCATCTCCTTGACAACCAGTAGTACAAGCACCAG
AAGTAAAGTCATGACGACTGTATAATAGTTGCCAAGACAGTTTCGGTGTC
GTTGGATATGGTTGGTAAGAAAGACTTAAGAACGGCCGAAGTCTTCAAGA
ATTTGGCGTTCTCTTTCGTGTAGCGAAATTTGGTTTGTCAAGTCAAGGAC
AATACACTGATCAACCCTGAAAGTATGGATAGTCTGAAGTCTGAGGTCGT
TGCATTGCATTGATTTTATGGTGGAGTTTTGATACCGTTTCGAAGAAAAG
ATACATTCTGTCAAGCCTAGGTCCTTTGTACCAAGCCAAGACTCTTGAAT
ACCAACTGAGTTGGTATCAAAAAGTGATATTAATGAACCTGCTCTATGGG
AGTTATCAAATGTAACAGAACTGACAAGAGTTGCTTCTGGTGTCtagttt
aaaaaatataaacatataTATGATATGAACTTTATTTTGCATATTGGACA
TGAGTCGAATATGAAATCCTCTGGTTCAATTATCGATAAAAAGTTTTGCT
TTCGGTTTCAGTAATTACTACAGTTTTAAGTAGACGAAAACTCGAGAGGC
AAGAACGAGCCAGAATAGTGTTTTTAAATATACTTTCTATTTTCCATTTA
GCTTGTTgctaaccctttaagtgccaatgtcgtatatatcagacatgggc
tatgtaggagggcgagattttaagccaaaaagtcaaaaaaatgcaaaaat
ttgacaaaaatccacttttttccgattttgaccgttttttgagcattttt
ggtcaacgagtgatccaagaacctccaaatttggccctcctttacttgat
tctgtcctccagcaaattaatttgaagttttaccactggtcacttttcta
tcattcaggcaggtccacGCAGCGTGGCACTTAAAGGAATAAATATAATA
TTCCTTTTGTTCTAGATAGCTTAAAATTTTACCATgtaaaaacttttatc
aaacgaaaaaagaaaaactaaatcaTTATTTAAGAACATCTTACAGTCGC
ACTTTCTTAAAACCTTAAATTTTCGCGGCTCCGAATAAATCAACTCGCCA
ATTTCGTTTAACTTGGTGGAATTCTTTTCGCCGATTgagaaaaactttaa
atttagCGAGAATTGATTTGGCAAATGAACAGAAACTCGAAACTTGGTAA
ATATGTTTGAGGAAATTCGCCGAATTTGCCAAATATTCTGTGAATTACTC
AATCCATGACGTAAGTAAAAGAATCAGGAAAGAAATATAAGATTGAACCG
ACATAGCGGGGAAAGCACATTAATTTTTAACGATTGAtccctggacattt
cgatttgTCACCCCATTTACCATAAAATTGACTAAATGCCAACAGACTCG
CGCAGGGACTTTTACAGGagtaatcgcacgatgggttattttttcttatt
tggcacgccctcaaagagagcaattaatcgttaatcacactctccaatgc
cgcgccaatgtttacaaaattgattttaatgtcttttgttacattttttt
tgcatcgaacgttttaattgcattcgaaatttattttgtgagaaagaaaa
tcaaaaaacaacactaaaagaaagacataaagagaagagaaaaagacaaa
actctcagtgtaatttctctaatttactTTCCTTACTGGGAAAAGTAGTG
ACAGTCATTGTGcaattagctcgtaatcacataataattcgtacaattcg
aaaattgcactcgtgatttttttgtttcaaattttcctcgtcctttcgga
ctcggaaaattaataacaaaaaaatcactcgtgcaattatattcgaattg
cactcgttatcatgtgattacatatactaatcgcacgatgggttattttt
tcttatttggcacgccctcaaagagagcaattaatcgttaatcacactct
tcaatgcggcgccaatgtttacaaaattgattttaatgttttttcttaca
ttctttttgcatcgaac Coding sequence (CDS) from alignment at sc0000278:199455..202971+ >TCONS_00017841 ID=TCONS_00017841|Name=TCONS_00017841|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at sc0000278:199455..202971+ (Clytia hemisphaerica)
ATGGGAAAATGTGTGACAGTGTTTTGGGTCGTTTTGACCATACTTTTCAC
ATTAGCAATTTGTTTTTCATTCGTCTCGCCTgtttggtttcaaaacgagg
ctgaactCAAACAGGTGGTCGGGCAATCGAGGCAAATCTCCAATCAGTAT
GATCCAGTCGCATTAGGAATGATACGATTCTGTCACCGTTATCAGCTATC
ACAGGCTATTCAGAAATGTGGATTTTTCACTAGCCTGAAAGACATGCCAA
GTATAGCCTGGATGGTCAGTGCAATTATTTATGCGATTGGATGTGTGTTT
TTTATCGTATCTGTCATCATGGCGTTCATATCAATTTGTACGAAAAGATC
GATGAGCGATAAATTGAAAGTTGCAACAGCATACATTCAAGTTATCGGAG
TTGGATTCCTGGCTATCGCTGTACTCATCTTTCCGCTCGGGCTTGATTCC
TCGTTCGCCCGTGACGTGTGCGGTCTAGAAGCAAAGATGTTTGTATCAGG
TGAATGTCAAGTAGCTTGGGGATACGTTCTTGCTATCATGTCCGTATCCT
TGACGATATTTTGTCCCATATTGGCAAAATATTCGACAGAGAATAAAGAG
ACTTATCGACAGGGGATTGGGACTGGGACGTACTCGGAGTATGATTACCA
AAAGAGTGAGGTCATCTCCTTGACAACCAGTAGTACAAGCACCAGAAGTA
AAGTCATGACGACTGTATAAATGGGAAAATGTGTGACAGTGTTTTGGGTC
GTTTTGACCATACTTTTCACATTAGCAATTTGTTTTTCATTCGTCTCGCC
TgtttggtttcaaaacgaggctgaactCAAACAGGTGGTCGGGCAATCGA
GGCAAATCTCCAATCAGTATGATCCAGTCGCATTAGGAATGATACGATTC
TGTCACCGTTATCAGCTATCACAGGCTATTCAGAAATGTGGATTTTTCAC
TAGCCTGAAAGACATGCCAAGTATAGCCTGGATGGTCAGTGCAATTATTT
ATGCGATTGGATGTGTGTTTTTTATCGTATCTGTCATCATGGCGTTCATA
TCAATTTGTACGAAAAGATCGATGAGCGATAAATTGAAAGTTGCAACAGC
ATACATTCAAGTTATCGGAGTTGGATTCCTGGCTATCGCTGTACTCATCT
TTCCGCTCGGGCTTGATTCCTCGTTCGCCCGTGACGTGTGCGGTCTAGAA
GCAAAGATGTTTGTATCAGGTGAATGTCAAGTAGCTTGGGGATACGTTCT
TGCTATCATGTCCGTATCCTTGACGATATTTTGTCCCATATTGGCAAAAT
ATTCGACAGAGAATAAAGAGACTTATCGACAGGGGATTGGGACTGGGACG
TACTCGGAGTATGATTACCAAAAGAGTGAGGTCATCTCCTTGACAACCAG
TAGTACAAGCACCAGAAGTAAAGTCATGACGACTGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017841-exon-sc0000278-1491911889:199455..200032 | TCONS_00017841-exon-sc0000278-1491911889:199455..200032 | Clytia hemisphaerica | exon |
| TCONS_00017841-exon-sc0000278-1510915933:199455..200032 | TCONS_00017841-exon-sc0000278-1510915933:199455..200032 | Clytia hemisphaerica | exon |
| TCONS_00017841-exon-sc0000278-1575043694:199455..200032 | TCONS_00017841-exon-sc0000278-1575043694:199455..200032 | Clytia hemisphaerica | exon |
| TCONS_00017841-exon-sc0000278-1491911889:200710..202971 | TCONS_00017841-exon-sc0000278-1491911889:200710..202971 | Clytia hemisphaerica | exon |
| TCONS_00017841-exon-sc0000278-1510915933:200710..202971 | TCONS_00017841-exon-sc0000278-1510915933:200710..202971 | Clytia hemisphaerica | exon |
| TCONS_00017841-exon-sc0000278-1575043694:200710..202971 | TCONS_00017841-exon-sc0000278-1575043694:200710..202971 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000278 | supercontig | sc0000278:199455..202971 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019372 | Lipome_HGMIC_fus_partner-like |
Blast
BLAST of TCONS_00017841 vs. Swiss-Prot (Human)
Match: TM211 (Transmembrane protein 211 OS=Homo sapiens GN=TMEM211 PE=2 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 8.032e-20 Identity = 57/198 (28.79%), Postives = 94/198 (47.47%), Query Frame = 2
Query: 203 WVVLTILFTLAICFSFVSPVWFQNEAELKQVVGQSRQISNQYDPVALGMIRFCHRYQLSQAIQKCGFFTSLKDMPSIAWMVSAIIYAIGCVF------FIVSVIMAFISICTKRSMSDKLKVATAYIQVIGVGFLAIAVLIFPLGLDSSFARDVCGLEAKMFVSGECQVAWGYVLAIMSVSLTIFCPILAKYSTENKE 778
WV L + T FS +SP WFQ + G++ +C Q + Q C F+SL+D+P AW VSA++ G + F++S +A +C +RS V +Q + + + +LIFP+GL S F ++VC + M+ G+C++ WGY+ AI++ L PI++ T +
Sbjct: 6 WVALGLSLTCTSAFSLISPAWFQTPT------------------FSFGILTYCSWPQGNSWNQSCVTFSSLEDIPDFAWKVSAVMLLGGWLLLAFNAIFLLSWAVAPKGLCPRRS-----SVPMPGVQAVAATAMIVGLLIFPIGLASPFIKEVCE-ASSMYYGGKCRLGWGYMTAILNAVLASLLPIISWPHTTKVQ 179
The following BLAST results are available for this feature:
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