TCONS_00017778 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017778
Unique NameTCONS_00017778
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1168

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017778 ID=TCONS_00017778|Name=TCONS_00017778|organism=Clytia hemisphaerica|type=transcript|length=1168bp
ATTGTTGGTAGATCGACCTGCAGACGCTGAAGAAGCGGCGACCAGTGGTT
GCATCATTAACACCTGTGGATGGGTGACCGGTGGAGGCTTCAAAATACTA
CTAAATGTCGTCGAAGAATTCAAAGTGGATGTGATCTTAGTTTTGGATCA
AGAGCGTGTTTacaatgatttcaaaacgaaACTTGGTGATTCTGTTCAAT
GTGTACATCTACCCAAGTCTGGTGGAGTTTTTGAACGTTCCCAAAACCAA
CGTCGTTCGGCACGTGAAGATCGTATACGTGAATACTTCTATGGAAATCG
TACGCCGTTATATCCGCACGTGTTTGACGTGAAGTTCAGTGAAGTCAAAA
TATATTCAATCGGTGcgCCCGAGGTACCAGATTCATGTTTACCGTTGGGA
ATGGCACCGACCACCGATAGTAGTATGAGAGAAGTTGCCGTCTCACCGAG
TACGAATTTGTTACATTCCTTATGTGCAGTAAGTGCAGCAGATGCGCCGG
AAGATCTTTGTCGAACGAATGTTGTTGGTTTTGTTGTCATaacTAACGTT
GATATGGAGAACGAAATCTTCACTGTCCTCTCGCCCGCTCCCAGACCTCT
TCCAAAAGAATATCTCATTGTTAGTAATATCAAATTCATGGACTTGAAAT
AAGAATACACTTGATACATTAGAAGTGGTCATCTAACGACAGCTGCAAGG
AAGATGTACCTAACGCGCTATCATTGTGAAGAAAGGATCCAGTTTCATGA
TAAAGAATGTTTTCTGTATTCATTAGAAAGCTTGAAATTCAAACTTGAGC
TGGATATTGATTGTATGGGACAATGAAAATTAAGCGTTATTCACAAAATG
CAAGGGCTTAAAAGGAGTATTAGACATTTGGTAAAGTAGTAATAACCGTT
GCAGAACTTGTGAAATCGAACACGTTGTTCGGTTTCGAAAAGAACGAATC
GCCTTCATGGATTGTTAATCCGTTGTTGTCAAGTTATTGGCTGTTGCCTT
CAGATTTTAGCAGCGACAATATATTCAGGTAGCTGAACGCAGTTGcaatt
taaagtattttataaGTTGTTTACTGTGACTTAAGTATCGGAACACAAAT
TACCGGCAAAAACTGTAAataattttccatatttttatgaaaaaaatgat
aataaaaaataacataaa
Run BLAST on NCBI

protein sequence of TCONS_00017778-protein

>TCONS_00017778-protein ID=TCONS_00017778-protein|Name=TCONS_00017778-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
LLVDRPADAEEAATSGCIINTCGWVTGGGFKILLNVVEEFKVDVILVLDQ
ERVYNDFKTKLGDSVQCVHLPKSGGVFERSQNQRRSAREDRIREYFYGNR
TPLYPHVFDVKFSEVKIYSIGAPEVPDSCLPLGMAPTTDSSMREVAVSPS
TNLLHSLCAVSAADAPEDLCRTNVVGFVVITNVDMENEIFTVLSPAPRPL
PKEYLIVSNIKFMDLK
Run BLAST on NCBI

transcript from alignment at sc0000276:69327..87476+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017778 ID=TCONS_00017778|Name=TCONS_00017778|organism=Clytia hemisphaerica|type=transcript|length=18150bp|location=Sequence derived from alignment at sc0000276:69327..87476+ (Clytia hemisphaerica)
ATTGTTGGTAGATCGACCTGCAGACGCTGAAGAAGGTATCGTCTCGTCAC
CTTGAAATTAATAACTTTATCTAAAAAATGTcctaaaaacagattttttt
tgGTTTACAAGGCGGTGAGTTTCTGAATTGCTGAAAAGTCTTTTATGTTC
TTGAGTATATTTTGTCTTTGCATACTGTGAGATGAGACTAAAACGAACAT
CGGGATTTGTTTTATTAATCAATCGGAAAACTGTCGAAAAGAATTTTAAG
CGATTTTCAATCCACAttcttttaatcatttttcaataactaataaggcg
agaccaaattaatttattgttctacccgggcccgaccgaccctttttttt
ccaaattggaaaaataataatatcgaatttGAAAAGCTGGACGATGGACt
ttatacaagttttttttgttgaaaaattcaaattcatcctaaagtctatt
cacgataagtgtgcactctttttttgaagaaattctttaatctNgttgaa
aaattcaaattcatccttaagtctattcacgataagtgtgcactcttttt
ttgaagaaattctttaatctttataaatttggtatcattggaaagatatt
attgagtggaacaatttgaaataaaaaaatctttaaaaaaattctaaaaa
cgaagatgaaaatgaagaagaaaaaaattgagaacttgtagaaaagtgct
ataactatcattttcactgaagtgaatccttgatcatcggacgtcatcac
tgtgaaaaaatttctcaaaaattaatcatccagtcaaaagatatcaaaca
aagttataagctgattgacgtctaaaacgctgttttctggggtcaatcac
ttattaactttgtatcataactttatattgaataaatattttagtgaaat
ttcttcacagtgatgacctcctaagattaAAGAGTTTCTCCagtgaagat
ttttttaaagacttttttatttcaaattgttccactcacaaatatctcac
caacgataccaaatttataaagattgaagaattccttcaaaagttatagg
taaaagaaaaaagagtgcacacttatcgtgaacagactttagaacTTATA
TTAGATgaatttaaaatattaaaacGGAAACAACACAAAAGTCACTCATT
GGCGgcagggggggcacgcagttactacaagacagtatgacacttactac
cgtggtggtactgtattcagaagttatgaaaacattactacacagtgtag
taactgctgtttgggggtggtgccaaacactaaaactagtacttttggtg
tagtaagtgcttatattttaattctttttaaagaactttcaaaatttttc
acaaaaaatgaatttttttgtgaaaaaattctttgttaaaaaaaatattt
tagttatAAATGgacggaaaaaaatttgaaatctttctcagacccaactt
tgaaattatcgcaatttagggtaatttcgagcatgtttttgatgatcact
caaaaacaggggtggtacctagaaatcttttctgaaaacagttactacca
aggtgtagtaactgcaaagggtggtggtcctgaaaaaaagtgttgaaaaa
gcacttactacaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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atgccgtacgtcaaatatcgaacttgctttcacccgccattacttgcctt
actcgccattacCCTCTTGCtatgtacgggaaaaacaccaaaacaccgta
taagcaaaaTCGACATAATGCcttacgtcaaatatcgaacttgctttcac
ccgccattacttgccttactcgccattacCCTCGCCACTgtaaccgtagc
cgtagagaattccagatacataatctcgctattgaTCGGGCTCATCCCCT
GGAGTCGAGACCTAGAAGAATTGTTGAGCAGGAGGATCAGCAGGACGGAC
ATATTGTTGTTGATGGATGTTTGTTTTGCGGTGGTGTTTTTGGTACTAGC
TTCGTTTAACCGTTGAACAGCACCATTGCAGAATCGGAGATGCTGTAGAG
CTCCCCTCTTGTTTCGCCTACTTTGTCATTTTACTGACAATTTTCGTTAT
CTTGTTGGGCTGGATTGTCGTCTCTCATTTCCATTTTAGTAAACTTTCAT
CAGATACTCTCTAAAGTAAAACATTCATTTGTTTGCGAGTTTCTTCACTA
GCATGTCTCATCAAATCATTTTTCGTTTTATTAACTTTTTTCCGGAACGG
AGCATGACATTCCGATGTCTTACGTAGCCGTCGTAATAACCTCTGTTTTG
GTTGGTGTTGATTTATTTGTGTTAGAAACAAACAGAGTCCACgccaccgg
ggggggggggggggggcatagccccccccccccctctttcgACTCGCCCC
CCCCCACCCTCCATccccttcccccccccccccttctttcAATTTCCTTT
TGAGGGGTCTtgtaaaaattttctatttttcatttttttttttgtttttt
tttttttttaaaaacaaaaagggccccccccccccctcttttaatttttg
gttgcgcctccttagactctatatccattgccccccccccactttcattt
caatttcatgtcGAGAGTTCTGATAAAGAGGTTCTGTCTacaattattgt
ctttgttgttCGTTGCTTCATATTTGCTCCAATTATTTAGTTTGCTTTTA
TACCTGAGATTAGAAAATACGAAAAGGATTCCGTATCAAATGTATTTGAT
CTTTTGTAAAGGTTCTACTTGTTTTAGAATTCTCCTGCTCTTCCCAGAgc
taataccgagtttatgtatcggaggatatcgaggatGACGGTTAGTCGAC
GCAAAACAAAGCCGATAGTTGATGTAAGGCTCTATCCACTATCCACTTTG
CTCACTTAAAAAGAAGACGCCATGTTGGTGTTTTTAACCGTCTTCAAGCA
AATGGACGGTAATAATTTTGGTGACGCaagtcaactttgctttatatcgt
ctccttcgatttatcaatttatacataaactcgctgatGCTTCGCCCATG
ACGCGCATGCTCTATTAATGCTGCAGCACCACATGCGAATCATGGAAGTT
TGGCATTATCTCTTGCGGTTCTGAATTTTTAAACTCCTCTAAAATAACTC
GACTGAATTTATAAATCAGTGTTCTTTTTCCATGgatttgatttttggaa
aagtgAAACGCACCCAAATGATTTATGAAAATAATCTTTCTTTGTCGATT
TTTTTTGTCGTGTACTCAACGTGAACATGTAAGTGTTATGAGATTTAGAC
AACGATCAAATATCTTCCGTTTGAATTTTCCCATTTTATTCACGTATTTG
ATAGCgagtacctcaccaaaaaccggggtTTTTCATTCCCTTACTTATGT
AGTGAGTTTCACTTGATGATTTTCGAAGAAAGAAGCCTCTCAAtggtttt
gacgcaaattcgattttttcactgcttcaaaatttcgaaagtttaaagtg
acgtcaaaaaatcgaatttttagagcccgaaaacctgggctcaaaacatt
caaaataagTCGCAAAGTGAATAATAGACGTTATTACATAGAAAAAAGCC
GTGACGTCTACACTATAGACTATGTATTTTATATTTATGAATAATTATTA
GCaagtaattaaaaaagtaatGGATATACAACGGTTTCAAGCACATCGTC
CTTTTAAATTATAATCACTCTCACACACAAATAATTGTTAGAATCATTGT
TGACGCCCTATCCCCTCCTATAGCGGGATTTTCGATTtactttttactta
tttttgggaaatcaagaaatttcaaaaagaagaaTCGGAAAGTCCTATTA
GCGAGGGAAACTCACGCATCTAGGCAGAAATTACGAAATTTAATTCtaca
taatttattttattcatttgtcAGATGAAAAAAGTGCGATGAAAAATTGT
AGTGAAGTGTTGCAGCTGAGAAGACATGCTCACTTCttctcttgaaaaag
aaaatgaaacagCGATACTCGCTATAATCATCTTTTTCCCGGTGTGGTAA
TTGAGCAAATGTCACGTACCGTAAAACTTTATTCTCTATATAGGGACTTT
CCAACTAGGTACCATACATATACCCTCTCTCTAAGAATAATATTGACTTT
AACattaatattgaaaaaaaagttttcagaagaATCAAACGATCTGAGTA
ACGGATCTCTTGAATCATATTtgaattttgttcattttttgtaCATATGT
ATTTTGCACTTTCATctcaatattttggaaaaagacAACAATGCAGTGGT
TGTCATTATTAAGGATTTCTTCAACCAAAGGCATGAAATCTTCAGttagg
gacataacagtacttgcgtaatttgtaaacaaactgtatgcagcggatac
aaaatcaaaacaaatgtgacatgtcaaaataaaaaatcaaaccaaatatg
gctagtttttattgttcaattgttttacaagtttgttttggacacgtgat
tttcattgttctctttaatgacacgtgttttgcgcaatgtttacatttta
ctactgtaatgtccctttaaagtcGTTACTGAACCTTTATCCTTTATTCT
AAGAAGTTGATTAACCTGCCTGGTGTCGTTGATAATATCTTTGCCATTGT
CACTAATTCAGAACCGACCATTTCTTAATATTAGGTtgtacagtcaactc
tctctaattcgaaactctacattttttttaattcgaactaaaatactgGT
CCCtttaagatcgaattagagagagtcaactgattcgatcaataaataat
tatttatttaatTAAGTGATTACTTATGATATGAGGGGTATTCAACCAAC
CCTAGTACCGTGGACAGACTAGACATAGAGACTTTATATAACATGAACCG
ATtccgtgtgacgtcattttcacccacgatccacgattttttattagaaa
tggTAGAAAGATTATGTACAGGATTGTTTAGAAACACTTTGATAACTCAA
AGTCttcaaatatttcccgtttggACCTGCACATAGTTTTTCGTTTCATG
GGTAAAATTTATGTCAGCTAGGAACAGGCAGCTTGTTTGAGGTTTGCTTG
AAGATAGTGCCTAACTGGATTTTGCCGAATCGGTCTATAGTATAGACAAT
TTCGAAAGAAAAGTAAAGGTATAATTTCCGTTTTCTAGTTGTAGACCGTG
GTTATAAAAACAGACTTGTGTATAAGTCTAGGGGGGATGGCTGCGTATCT
TAAAATGAAATCCTGTCCTCTTCGGTGATCCATCCATTTGCAcgataaaa
tgaaatttcaagtAACATTCGGAAAGCATGGCTAAAAAGTGGGTGAATTT
ATAAACCCGAAGTGCTAGATGCCGTACTTTAAGCCAtctcaggcaaaaaa
agtgaatatcagaaacaatattgttgctattgttttcgaagacccgcgaa
gcttctgattggtcaagtgctgaaattttattgtaatgtcacgtgaccta
ggtaggattacctacctaaccacgacacttttcagcaaaagtacgccatC
TAGCCTATCGGGCTTTAGAAATCTATGGGGTGAAACCTGACCTGCAATGG
TTCTACTTTGCATAAAAGTcctaaatataatataaaaaaaagtacGTGAT
GTATATAAGTTTTTCTACATCGGCAAattaattctgaaaaaaaaggaaaa
agagaaTTAATGGAATTGAATGGTAATGTTTTGTTATGTGGAGGTGCTGT
GATTTATATTTGAAGGTTTAATCAAATCCGAGAAGGGGTGTTTAAACAAT
aatatgtttcactttttttatttttaaataagtttgcgtttatcgtccca
gtgatattcatattggaagtttatcgtggcttggatcttATTATGGctta
ttctctttttttttactgTTACTTAGAGATTTATTTTGTCTTTCATAGGA
GATTTCATCTTGCCCTTATTAAAGTAAAACATTTGGAATCTTTTATATGT
ATACACAGTCAATTTAGCATATATATGAAAATTGTCGGAAAAGATAAAAT
TAGTCGATTAGATTCCGGGTTGAGAGAATAAGTTTNNNNNNNNNNNNNNN
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cggcttaaaaacgggttttttggactttgtgaaaaattggatcattaatt
ttttctgatttttagcatgaaagtagggtacaatcatagtcttcaaaatc
aaaaaagacctataccacgtgatagagctcttcaaactgagcaaaaaaat
gtattatatcaaagtctcaacttttctaaatcaaaagttatgggggtttt
tgtggtaaaaaagtgctataattttgcataaattatgcagattgtgggga
aattccctgttttcaatcaatttttgaatatgggggggggttgaattttt
tatttatttttgaaacaataaaaatccACTGGCCAGGGCCtacatttccg
cactaagattcttgttacttttctggaatctttctcCTATATATTTTTCA
CAGGATAAtcggcaagagattggggagggtttgtttaatgggatgcagtt
taaagcagttataaagaAGTCAAAGTCAaatctcaaggagtattatttct
tcaaagcttaaagttggctagtttttaccctgcaattttctagtccagaa
gctggagctggagctcaactacactcattttttttataagcataacgttt
ataagcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNattatttttctcaagtatattgcagttctct
gaattattctgaattgaaagattttgtttacgctttatagaatagaattc
tttagtcgcatttttaaaggaatattttttttaatggattgagatttttc
attaaaaaaacagggctatgacctgtgtgtacaatcagaggaatgtaaag
agatggaaaaacagcttcttgaaaacaatggaaaaacggctcgtcatata
ccaggtctcttgcccttaagggagtttatgtcNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNgtgttgtgacaaaattcttttgtttcaagcctgattatg
cgcaaacttttagggcttatattttgggtataCCTCTCCTagacgaaaag
gtacctatatcttctggctcagaatttcctagcgattctattGATATAAC
CGCATTATGACCGCATCATTATATGTAAAGCTAGAGcgcgagaaaattat
aacttcatattgactttactcgacttctgacagatttacaagaaccaatt
taatatcattgcgttaagaatttctttttctatacattagtaaaaatatt
gctccttattcttaaaaattgaactagtaatcggcaaaaNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNttgtatggcgagccgtcttttctggactttca
tttaatgacctaatcaaagtttttacaatagaattttcaatagaagtgat
cgttgaactttgagtaatctgaaaagctgtttttccatctctttacattt
ctctggtacaatacattgtgtatattttgtgtaacgcttcattcaaaatg
cataatgctgcaggagtcacgtatcacgcgtcttcgtcgttgatgttcaa
gtattatgcgaaattttcgactttaagtcgtcttgtttatttttaaataa
gtttgcgtttatcgccccagtgatattcatattggaagtttatcgtggct
tggatcttATTATGGcttattctctttttttttactgTTACTTAGAGATT
TATTTTGTCTTTCATAGGAGATTTCATCTTGCCCTTATTAAAGTAAAACA
TTTGGAATCTTTTATATGTATACACAGTCAATTTAGCATATATATGAAAA
TTGTCGGAAAAGATAAAATTAGTCGATTAGATTCCGGGTTGAGAGAATAA
GTTTAGCTTTGTATCGCTTATTATCTTTCACATTTCAGAAAAAATGATAT
AGATCAAATCTTCACACAAAAACTTCTCAACTTCCCGCAGTAACATTGac
catttttccaaaaatgggAAACACGACCAACGAAACACTGGGCACagtgg
aagaaattttcaatcgTAATGTCACACTTATCTACTANACCAACGAAACA
CTGGGCACagtggaagaaattttcaatcgTGATGTCACACTTATCTACTA
TTCGTTGACAATAACAatcattttctgcgcatgtgcTTTGAACCTGATGT
TTATTTACATATATCTGACGAGAAGAATACGGCATACCAATTTCAACTTT
TGTTTGTTTCAGTTAGCTGTTAGTAACATGGTGCAACAAATAGGGTTTAT
TCCTTTCATAGCTGTTAAGAACCGTCGTCATATACAGTCAGGGTACTGGT
ATCTCGAAGCAATACAGTGCGGGTTTATTGATGGGCTGTCGGTGTTTTTC
ACGGCAGCTTTTGTGACGGTTTATATCATTTGTTTTATGTCGGTCAATTG
GTATAGAATCATTAAAAAGCCGTTTATtgtcaaaaacacaaaaaagcgAT
ATATTTCGGGATACGTCATCACCTTGTGGTTGACAGGCTTTATTTTAGTG
ACACCAAATTTCTTGACATTCAAACTGGATTACAAGCATGGTTTCTGTGT
CCGTAACGATGTTTTCGGCCAATCATTCAATTTCTTTTACAAAGCTTTTC
TCCTAATGGTCGGCCTCATTCTTCCTGTGACTACCATGTGTTTTACCTAT
ATGCTTGTCATATTTCTGATGTGTCGTCGGCGGACAAAGAAACACGAGGA
TTTCAAGAGTCGCACAAAGGAGAAACATAGGATGAAGGTTATCAGATATA
TAGGCATTTTGATCAGTGTGTTTTTAGTGACGTGGTTACCTTTCGGTATC
TTTTGGCTACTCATTATGACTGGCTACTTTGACAGAGGTATAAGGGGCCA
GTACGAAAAAACTAGATATAATAATTGGGTGATGGTACCATGTCTTTTAG
CAAGCATTTTGAACATTATATTTTACGGAAAGAATAATAAAGAACTGCGT
TCAGCCACACGAAAGATTTCCACCTTATCCGTGATAATGAATTGGACGAA
AGAAAAACGATCGTCAGTTTTGGCGAAATGATGAACCTTTTGCAAAATGT
TGACTCCCTTAGACATTGTTGAAACATTatcattttaaaatttgtaCATT
ATTAATACGCGTATTTTTATGTGTTTCAAGATAGGCATTCGCTTCAGGAA
TTTGTTTACGCTAGAATttcatttacaaaatttaaTCACTTTAGTAATAT
AAAATTCGTAACCACGGATAACAATAGACGTATAAACTGctaaatttctt
taaaagttGACCAAAGCCATTTTTGAAATTCACACTTGCAATTCCATTTA
GAAAACTTTAAATTCCCCATTTCTCGGCAAGCCATCGAGATTTGAGAGAC
AAATCACTTTTATTCTGACTGAATAAGGTGTTGCAACTTTTATTAACTTA
AATTCTGAAGTGACTTTCTGGCTCTTGAAtgcatggtttcagcccacttt
ttaGTTGCGCCCATTGAAGCATGGTGCCCCCAACGAgttaggtccccttg
agaaattgctttgagttaggtacccctattcagccgatgatttttttgaa
ttaacaccttttgttcttttttcattcctaaaatcttaatggtgctgggg
taaaaaaattcaataatttgaaatattttaaaatattcgatttggaaaat
ataaccagcccccagagcctccatcaagacagctaggtacccttaatgaa
taggtaaccccaaagaattgcaaaacAATAGCCTGCTactactaacctgg
cctaggtgcccttcagatttctggggggggggcttagATCATGGAATGTA
GATTTGTGGCTTAAACCCACAATTTCCGGTCAGAATTCATGCGTCCTAGT
GCCCAACAACTCACCAAAATAACAATCGTTTTAATCGTTTTGTTCTTTCC
TTCTCCAAGCGGCGACCAGTGGTTGCATCATTAACACCTGTGGATGGGTG
ACCGGTGGAGGCTTCAAAATACTACTAAATGTCGTCGAAGAATTCAAAGG
TGTGTATTTGACCTTACTACAACGTTAAATTTGCCTTTCCCCTCAGTTTT
TCAGCTGACAATCTATAAAAGGGTTGTCATTAAACTGGCGTGAGTTTTTG
ACTAAGTTTGTTTGACATAATTACAAAAATTTGCCAACAAAATTGTGAAA
CGTTCTTTAAAAAGTGTCATGTCAATTCATACATTTGCATGTGctaaaat
taagaatattaaCTATGTTTATAGAGGTTACATCTGAAACGTTCATAGAT
TATTATTTTCGaattatttctttctttctttccagTGGATGTGATCTTAG
TTTTGGATCAAGAGCGTGTTTacaatgatttcaaaacgaaACTTGGTGAT
TCTGTTCAATGTGTACATCTACCCAAGTCTGGTGGAGTAAGCAGTAGCCA
TTTTGTTTGCGGgctaaaaaattattgaaatttctAGATTTAATTTCGTG
GATCAGAGAAAGGAattcgtttttattttttcattttctgaaattGCTCA
AAACATCGACctacaaaatcaatttcttttttatatatttataaaaacta
ttttttaagAACACCATTCTCATATTTGGGCCTTCAGaatcaaaagctct
attttttggaacaatagaaatttaagGACTCTCAGGCTCAGCTAAAATTT
acgggttctaataaaaaagcgtATAATTTCAGTGTAAAGTTTTGCATAGC
TTTTTAATTTTCGTTGAATTAACACTtcttagtttttgaaaaaatattca
gcGATTTTTAAAATTCCTCGTCCAATAAGTAAATTCAAACCGAAAAGACT
TCCCGCTTGAGTTCAAATCTGTGACAGTCGACTGTTGTCTCTTATGCAGT
TAGCCCGTTCACATATGAGTATgaacgttttctttataagaacatccaaa
attgctgaagccttcggatgctcttaacttttcagatttaagcctaaaaa
tgttcttaacttgtaattttgtgcgtttttctaagaaattgggtgcttta
gagtccccaaagccttaaaatgtttttaacactgaacattttggccatgg
aagccatctgttcttatatagtttgttcttataaaaaaacgtgtattatt
gTTTCCTCTAATTCATTAGGTTTTTGAACGTTCCCAAAACCAACGTCGTT
CGGCACGTGAAGATCGTATACGTGAATACTTCTATGGAAATCGTACGCCG
TTATATCCGCACGTGTTTGACGTGAAGTTCAGTGAAGTCAAAATATATTC
AATCGGTGGTAAGGGatactgaaaaaatttttttgctacaGTTTTTAATA
AAGTTGACATTTTTAAGttggtcaaaaaattttaacataatttttgattg
actgaGTCGATTTAAAGTTATAtacaccaaaatttaagttaggcTTATAT
CTGTAAGCTCACAATAATATCtggacaaacctgtatacttatTACTGGCG
CACCCGGAAAAGTTTGCAAGGCTCGGTAAGTCATTTAACTTAGCAGGCAG
ACCAGCAGGTCTAGTAAACTACCGAACCGTCCTTTACGCGATTCGAACAT
TACCGTACTttacctataacaatccaaaagtactctttaacaatcaaaag
cgccaaaatcgcaaaaattcaGATAATGCTGCGATATTGCCACTTTTTTT
GCGATTAAGTACGGTATGATATTATCTgatctctttcattttttaatttt
cagcgCCCGAGGTACCAGATTCATGTTTACCGTTGGGAATGGCACCGACC
ACCGATAGTAGTATGAGAGAAGTTGCCGTCTCACCGAGTAAGAGATCTTT
ATTGTTGGTCTACGGGACCATCCATATAGTACATATGCAGTGAGAAGGGT
AGATGGAGTCTAGCAGAAGCCTACGTTGAATTATATTATTTATATTGTCT
TCTGCGTACAAGGCCCCCCTCCTGTGTCAAGTATTTGGAAATAATATATG
GAATTATCAATTCAAATCTTACTGTCCAACCTCTGAAAAGGATTTTTCAA
CGGTtatttctgagaaaaatacttcaaaatttcCAACAAGAAAGTATACA
GCCTTTAAAGTATAAGTCGAACAATATGCTTGCACCCTCGAATAGCCTCG
AATATTTTCTTATTACTCGAATTCGGAATCTGTAGATTTAAAGAATCGAC
GCGTCGAAAAATTGTAGATATGTTATTATTGTAATTTCTTACCTATATCT
TCTGCTCCCATTGGATAGGTACGAATTTGTTACATTCCTTATGTGCAGTA
AGTGCAGCAGATGCGCCGGAAGATCTTTGTCGAACGAATGTTGTTGGTTT
TGTTGTCATGTgagttcttaatattttgattaGACCTTGCTTGCTAATTT
CATATCGAGGCTACACTacaatgtttttaatttcataaaattttctaATC
AAGTTTCCAGTATCAGAAAGGTAGTATAAAGTTGTTGCAGTTCTTTTGGA
AAAGATCTTCAATCGCCCACAGGGCATTAAAAACAAATCTCAAGTGAATG
TCGTACAGACACCCTGTTTACTGTAAACTAaactcaatataatttgcagc
ggagacaaaaaaggctctTGTTTTCCGGATGGAGGGATGTCTTTTAAATT
TGTTGTACGCGAGCTTTGCGTcagatttgatgtttttaaatttagttGCA
AAgactgcaaattatattgagacagactctAGGTCATTTGAATGTTCTgc
tatgtttttctttctttttcagaacTAACGTTGATATGGAGAACGAAATC
TTCACTGTCCTCTCGCCCGCTCCCAGACCTCTTCCAAAAGAATATCTCAT
TGTTAGTAATATCAAATTCATGGACTTGAAATAAGAATACACTTGATACA
TTAGAAGTGGTCATCTAACGACAGCTGCAAGGAAGATGTACCTAACGCGC
TATCATTGTGAAGAAAGGATCCAGTTTCATGATAAAGAATGTTTTCTGTA
TTCATTAGAAAGCTTGAAATTCAAACTTGAGCTGGATATTGATTGTATGG
GACAATGAAAATTAAGCGTTATTCACAAAATGCAAGGGCTTAAAAGGAGT
ATTAGACATTTGGTAAAGTAGTAATAACCGTTGCAGAACTTGTGAAATCG
AACACGTTGTTCGGTTTCGAAAAGAACGAATCGCCTTCATGGATTGTTAA
TCCGTTGTTGTCAAGTTATTGGCTGTTGCCTTCAGATTTTAGCAGCGACA
ATATATTCAGGTAGCTGAACGCAGTTGcaatttaaagtattttataaGTT
GTTTACTGTGACTTAAGTATCGGAACACAAATTACCGGCAAAAACTGTAA
ataattttccatatttttatgaaaaaaatgataataaaaaataacataaa

Coding sequence (CDS) from alignment at sc0000276:69327..87476+

>TCONS_00017778 ID=TCONS_00017778|Name=TCONS_00017778|organism=Clytia hemisphaerica|type=CDS|length=4557bp|location=Sequence derived from alignment at sc0000276:69327..87476+ (Clytia hemisphaerica)
TTGTTGGTAGATCGACCTGCAGACGCTGAAGAAGCGGCGACCAGTGGTTG
CATCATTAACACCTGTGGATGGGTGACCGGTGGAGGCTTCAAAATACTAC
TAAATGTCGTCGAAGAATTCAAAGTGGATGTGATCTTAGTTTTGGATCAA
GAGCGTGTTTacaatgatttcaaaacgaaACTTGGTGATTCTGTTCAATG
TGTACATCTACCCAAGTCTGGTGGAGTTTTTGAACGTTCCCAAAACCAAC
GTCGTTCGGCACGTGAAGATCGTATACGTGAATACTTCTATGGAAATCGT
ACGCCGTTATATCCGCACGTGTTTGACGTGAAGTTCAGTGAAGTCAAAAT
ATATTCAATCGGTGcgCCCGAGGTACCAGATTCATGTTTACCGTTGGGAA
TGGCACCGACCACCGATAGTAGTATGAGAGAAGTTGCCGTCTCACCGAGT
ACGAATTTGTTACATTCCTTATGTGCAGTAAGTGCAGCAGATGCGCCGGA
AGATCTTTGTCGAACGAATGTTGTTGGTTTTGTTGTCATaacTAACGTTG
ATATGGAGAACGAAATCTTCACTGTCCTCTCGCCCGCTCCCAGACCTCTT
CCAAAAGAATATCTCATTGTTAGTAATATCAAATTCATGGACTTGAAATA
ATTGTTGGTAGATCGACCTGCAGACGCTGAAGAAGCGGCGACCAGTGGTT
GCATCATTAACACCTGTGGATGGGTGACCGGTGGAGGCTTCAAAATACTA
CTAAATGTCGTCGAAGAATTCAAAGTGGATGTGATCTTAGTTTTGGATCA
AGAGCGTGTTTacaatgatttcaaaacgaaACTTGGTGATTCTGTTCAAT
GTGTACATCTACCCAAGTCTGGTGGAGTTTTTGAACGTTCCCAAAACCAA
CGTCGTTCGGCACGTGAAGATCGTATACGTGAATACTTCTATGGAAATCG
TACGCCGTTATATCCGCACGTGTTTGACGTGAAGTTCAGTGAAGTCAAAA
TATATTCAATCGGTGcgCCCGAGGTACCAGATTCATGTTTACCGTTGGGA
ATGGCACCGACCACCGATAGTAGTATGAGAGAAGTTGCCGTCTCACCGAG
TACGAATTTGTTACATTCCTTATGTGCAGTAAGTGCAGCAGATGCGCCGG
AAGATCTTTGTCGAACGAATGTTGTTGGTTTTGTTGTCATaacTAACGTT
GATATGGAGAACGAAATCTTCACTGTCCTCTCGCCCGCTCCCAGACCTCT
TCCAAAAGAATATCTCATTGTTAGTAATATCAAATTCATGGACTTGAAAT
AATTGTTGGTAGATCGACCTGCAGACGCTGAAGAAGCGGCGACCAGTGGT
TGCATCATTAACACCTGTGGATGGGTGACCGGTGGAGGCTTCAAAATACT
ACTAAATGTCGTCGAAGAATTCAAAGTGGATGTGATCTTAGTTTTGGATC
AAGAGCGTGTTTacaatgatttcaaaacgaaACTTGGTGATTCTGTTCAA
TGTGTACATCTACCCAAGTCTGGTGGAGTTTTTGAACGTTCCCAAAACCA
ACGTCGTTCGGCACGTGAAGATCGTATACGTGAATACTTCTATGGAAATC
GTACGCCGTTATATCCGCACGTGTTTGACGTGAAGTTCAGTGAAGTCAAA
ATATATTCAATCGGTGcgCCCGAGGTACCAGATTCATGTTTACCGTTGGG
AATGGCACCGACCACCGATAGTAGTATGAGAGAAGTTGCCGTCTCACCGA
GTACGAATTTGTTACATTCCTTATGTGCAGTAAGTGCAGCAGATGCGCCG
GAAGATCTTTGTCGAACGAATGTTGTTGGTTTTGTTGTCATaacTAACGT
TGATATGGAGAACGAAATCTTCACTGTCCTCTCGCCCGCTCCCAGACCTC
TTCCAAAAGAATATCTCATTGTTAGTAATATCAAATTCATGGACTTGAAA
TAATTGTTGGTAGATCGACCTGCAGACGCTGAAGAAGCGGCGACCAGTGG
TTGCATCATTAACACCTGTGGATGGGTGACCGGTGGAGGCTTCAAAATAC
TACTAAATGTCGTCGAAGAATTCAAAGTGGATGTGATCTTAGTTTTGGAT
CAAGAGCGTGTTTacaatgatttcaaaacgaaACTTGGTGATTCTGTTCA
ATGTGTACATCTACCCAAGTCTGGTGGAGTTTTTGAACGTTCCCAAAACC
AACGTCGTTCGGCACGTGAAGATCGTATACGTGAATACTTCTATGGAAAT
CGTACGCCGTTATATCCGCACGTGTTTGACGTGAAGTTCAGTGAAGTCAA
AATATATTCAATCGGTGcgCCCGAGGTACCAGATTCATGTTTACCGTTGG
GAATGGCACCGACCACCGATAGTAGTATGAGAGAAGTTGCCGTCTCACCG
AGTACGAATTTGTTACATTCCTTATGTGCAGTAAGTGCAGCAGATGCGCC
GGAAGATCTTTGTCGAACGAATGTTGTTGGTTTTGTTGTCATaacTAACG
TTGATATGGAGAACGAAATCTTCACTGTCCTCTCGCCCGCTCCCAGACCT
CTTCCAAAAGAATATCTCATTGTTAGTAATATCAAATTCATGGACTTGAA
ATAATTGTTGGTAGATCGACCTGCAGACGCTGAAGAAGCGGCGACCAGTG
GTTGCATCATTAACACCTGTGGATGGGTGACCGGTGGAGGCTTCAAAATA
CTACTAAATGTCGTCGAAGAATTCAAAGTGGATGTGATCTTAGTTTTGGA
TCAAGAGCGTGTTTacaatgatttcaaaacgaaACTTGGTGATTCTGTTC
AATGTGTACATCTACCCAAGTCTGGTGGAGTTTTTGAACGTTCCCAAAAC
CAACGTCGTTCGGCACGTGAAGATCGTATACGTGAATACTTCTATGGAAA
TCGTACGCCGTTATATCCGCACGTGTTTGACGTGAAGTTCAGTGAAGTCA
AAATATATTCAATCGGTGcgCCCGAGGTACCAGATTCATGTTTACCGTTG
GGAATGGCACCGACCACCGATAGTAGTATGAGAGAAGTTGCCGTCTCACC
GAGTACGAATTTGTTACATTCCTTATGTGCAGTAAGTGCAGCAGATGCGC
CGGAAGATCTTTGTCGAACGAATGTTGTTGGTTTTGTTGTCATaacTAAC
GTTGATATGGAGAACGAAATCTTCACTGTCCTCTCGCCCGCTCCCAGACC
TCTTCCAAAAGAATATCTCATTGTTAGTAATATCAAATTCATGGACTTGA
AATAATTGTTGGTAGATCGACCTGCAGACGCTGAAGAAGCGGCGACCAGT
GGTTGCATCATTAACACCTGTGGATGGGTGACCGGTGGAGGCTTCAAAAT
ACTACTAAATGTCGTCGAAGAATTCAAAGTGGATGTGATCTTAGTTTTGG
ATCAAGAGCGTGTTTacaatgatttcaaaacgaaACTTGGTGATTCTGTT
CAATGTGTACATCTACCCAAGTCTGGTGGAGTTTTTGAACGTTCCCAAAA
CCAACGTCGTTCGGCACGTGAAGATCGTATACGTGAATACTTCTATGGAA
ATCGTACGCCGTTATATCCGCACGTGTTTGACGTGAAGTTCAGTGAAGTC
AAAATATATTCAATCGGTGcgCCCGAGGTACCAGATTCATGTTTACCGTT
GGGAATGGCACCGACCACCGATAGTAGTATGAGAGAAGTTGCCGTCTCAC
CGAGTACGAATTTGTTACATTCCTTATGTGCAGTAAGTGCAGCAGATGCG
CCGGAAGATCTTTGTCGAACGAATGTTGTTGGTTTTGTTGTCATaacTAA
CGTTGATATGGAGAACGAAATCTTCACTGTCCTCTCGCCCGCTCCCAGAC
CTCTTCCAAAAGAATATCTCATTGTTAGTAATATCAAATTCATGGACTTG
AAATAATTGTTGGTAGATCGACCTGCAGACGCTGAAGAAGCGGCGACCAG
TGGTTGCATCATTAACACCTGTGGATGGGTGACCGGTGGAGGCTTCAAAA
TACTACTAAATGTCGTCGAAGAATTCAAAGTGGATGTGATCTTAGTTTTG
GATCAAGAGCGTGTTTacaatgatttcaaaacgaaACTTGGTGATTCTGT
TCAATGTGTACATCTACCCAAGTCTGGTGGAGTTTTTGAACGTTCCCAAA
ACCAACGTCGTTCGGCACGTGAAGATCGTATACGTGAATACTTCTATGGA
AATCGTACGCCGTTATATCCGCACGTGTTTGACGTGAAGTTCAGTGAAGT
CAAAATATATTCAATCGGTGcgCCCGAGGTACCAGATTCATGTTTACCGT
TGGGAATGGCACCGACCACCGATAGTAGTATGAGAGAAGTTGCCGTCTCA
CCGAGTACGAATTTGTTACATTCCTTATGTGCAGTAAGTGCAGCAGATGC
GCCGGAAGATCTTTGTCGAACGAATGTTGTTGGTTTTGTTGTCATaacTA
ACGTTGATATGGAGAACGAAATCTTCACTGTCCTCTCGCCCGCTCCCAGA
CCTCTTCCAAAAGAATATCTCATTGTTAGTAATATCAAATTCATGGACTT
GAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009965XLOC_009965Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017778-proteinTCONS_00017778-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017778-exon-sc0000276-1491911889:69327..69361TCONS_00017778-exon-sc0000276-1491911889:69327..69361Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1510915933:69327..69361TCONS_00017778-exon-sc0000276-1510915933:69327..69361Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1575043694:69327..69361TCONS_00017778-exon-sc0000276-1575043694:69327..69361Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1491911889:84036..84125TCONS_00017778-exon-sc0000276-1491911889:84036..84125Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1510915933:84036..84125TCONS_00017778-exon-sc0000276-1510915933:84036..84125Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1575043694:84036..84125TCONS_00017778-exon-sc0000276-1575043694:84036..84125Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1491911889:84412..84512TCONS_00017778-exon-sc0000276-1491911889:84412..84512Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1510915933:84412..84512TCONS_00017778-exon-sc0000276-1510915933:84412..84512Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1575043694:84412..84512TCONS_00017778-exon-sc0000276-1575043694:84412..84512Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1491911889:85246..85384TCONS_00017778-exon-sc0000276-1491911889:85246..85384Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1510915933:85246..85384TCONS_00017778-exon-sc0000276-1510915933:85246..85384Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1575043694:85246..85384TCONS_00017778-exon-sc0000276-1575043694:85246..85384Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1491911889:85830..85913TCONS_00017778-exon-sc0000276-1491911889:85830..85913Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1510915933:85830..85913TCONS_00017778-exon-sc0000276-1510915933:85830..85913Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1575043694:85830..85913TCONS_00017778-exon-sc0000276-1575043694:85830..85913Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1491911889:86345..86435TCONS_00017778-exon-sc0000276-1491911889:86345..86435Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1510915933:86345..86435TCONS_00017778-exon-sc0000276-1510915933:86345..86435Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1575043694:86345..86435TCONS_00017778-exon-sc0000276-1575043694:86345..86435Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1491911889:86849..87476TCONS_00017778-exon-sc0000276-1491911889:86849..87476Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1510915933:86849..87476TCONS_00017778-exon-sc0000276-1510915933:86849..87476Clytia hemisphaericaexon
TCONS_00017778-exon-sc0000276-1575043694:86849..87476TCONS_00017778-exon-sc0000276-1575043694:86849..87476Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000276supercontigsc0000276:69327..87476 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.4465	26.6598	66.768	69.0922	50.4878	40.6452	47.8477	54.9021	38.8123	39.387	31.4086	25.9932	21.2332	21.5654	19.6623	19.9058	41.6019	33.361	9.16296	13.9505	27.649	27.3213	41.9506	38.4091	34.3573	37.6819	21.4067	14.238	24.6366	26.3977
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR010655Pre-mRNA_cleavage_Clp1
IPR032319CLP1_P
Vocabulary: Biological Process
TermDefinition
GO:0031124mRNA 3'-end processing
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031124 mRNA 3'-end processing
Blast
[Close]
BLAST of TCONS_00017778 vs. Swiss-Prot (Human)
Match: CLP1 (Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Homo sapiens GN=CLP1 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 1.933e-79
Identity = 116/206 (56.31%), Postives = 160/206 (77.67%), Query Frame = 2 
Query:   35 AATSGCIINTCGWVTGGGFKILLNVVEEFKVDVILVLDQERVYNDFKTKLGDSVQCVHLPKSGGVFERSQNQRRSAREDRIREYFYGNRTPLYPHVFDVKFSEVKIYSIGAPEVPDSCLPLGMAPTTDSSMREVAVSPSTNLLHSLCAVSAADAPED-LCRTNVVGFVVITNVDMENEIFTVLSPAPRPLPKEYLIVSNIKFMDLK 649
            A+ SGC+INTCGWV G G++ L++    F+VDV++VLDQER+YN+ K  L   V+ V LPKSGGV ERS++ RR  R++RIREYFYG R   YPH F+VKFS+VKIY +GAP +PDSCLPLGM+   D+ ++ V V+P  +++H L +VS A+  E+ L  T+V GF+V+T+VD+E+++FTVLSPAPRPLPK +L++ +I+FMDLK
Sbjct:  221 ASVSGCVINTCGWVKGSGYQALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDERIREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMS-QEDNQLKLVPVTPGRDMVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIRFMDLK 425
The following BLAST results are available for this feature:
BLAST of TCONS_00017778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CLP11.933e-7956.31Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Homo... [more]
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