TCONS_00017493 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017493
Unique NameTCONS_00017493
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017493 ID=TCONS_00017493|Name=TCONS_00017493|organism=Clytia hemisphaerica|type=transcript|length=1328bp
tttgtttaaatctatcgatggctttatgggcagcttcccctagaagttta
gAGTATcatgcttattatgtgaagtttttttcaatttttcatgacaaggc
tattatatttcaatatacttgctAAAAAtctaatgtcttttcattcatct
taaatattcccacgagtatacccaaaattaatcatcttattcccaaagca
actaaacagctgtttgcttccgatgataaatcagaatagaacaaaaggca
ttgactctccatctatctttattaccttcatgattCAATTCACCCTAATG
GTcgatgttttcattttagttcgAAGACCACGAGAAGCAGTCCATGACTC
TGCTCATCTGTTGTATCTGTCAAAGAAATCAAGAGAGCAAGCACAAGAAC
TCAAAACTGATATTGTTGCATTTGATAATGTAACATTCATCAAAAAACTG
ATTGGTTCAGTGAATGGATATCAACTCACTGGATGTTCCGAAGAAGATGA
TGATGAAATAGACCTTCCCAAAGATGCCTGGAAAACACTTGGAAGAAAGG
CTGTATCACTTTTCAAGAAGGCCCCAGCATTCGAATTCCTacTGGGACCA
TTGGTAATTGAAGTTCAAGTCAAAGAAAAGGTTGTTCGCCAAAGAAAGAA
GGATGAAAATGTCGCCACTAAAAAATTGGAACAGATTGTCAGCGttgaaa
aacaagaagaagCCACTACGAAAGAGGTGGACAGAATttacaaaatcttg
aaaaagaaaaccaaagatGGGTCTCGTCCTATCTGTTTCTTCAACTTTGC
AGTCAATCCTGAATCGTTTGGTCAAACTgttgaaaatatattccatATCG
CTTTCCTCATAAAAGACAGTCGTGTGATCGTTGACTTTGACGAGGACGAC
ATCCCGACAATTAATTTGAATAAGAATCGAACGGAAGAACATACATCAGA
AACGCAACGTAGACAGGTGGTCATGCCTCTCACCATGAAAGAATGGAAGG
AACTGGTTGAAGTGTACGATATTCAGGAATCAACGATACCAACTCGAGCT
AAAATTCATTGAAGGACATTGTTTAAATACATCAAAGAACTCTTTATTTC
GCTTCGTGCTGGATTGATTTGGCCTGATTGCAGCAGGTACGCTCATAAct
aaaaaaacgaaaacattCAATTCCTGGGATATCTAAGGGTTAAAAGAGGA
Ctgtaagtaatagttatcggacagttgcgagtacaatatgagaaatattt
tacgagctccgagatttttccgtacaatattcggaaaatccggaacgagt
gaaatatttccatattgtacgagcaact
Run BLAST on NCBI

protein sequence of TCONS_00017493-protein

>TCONS_00017493-protein ID=TCONS_00017493-protein|Name=TCONS_00017493-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
MINQNRTKGIDSPSIFITFMIQFTLMVDVFILVRRPREAVHDSAHLLYLS
KKSREQAQELKTDIVAFDNVTFIKKLIGSVNGYQLTGCSEEDDDEIDLPK
DAWKTLGRKAVSLFKKAPAFEFLLGPLVIEVQVKEKVVRQRKKDENVATK
KLEQIVSVEKQEEATTKEVDRIYKILKKKTKDGSRPICFFNFAVNPESFG
QTVENIFHIAFLIKDSRVIVDFDEDDIPTINLNKNRTEEHTSETQRRQVV
MPLTMKEWKELVEVYDIQESTIPTRAKIH
Run BLAST on NCBI

transcript from alignment at sc0000269:141817..147979+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017493 ID=TCONS_00017493|Name=TCONS_00017493|organism=Clytia hemisphaerica|type=transcript|length=6163bp|location=Sequence derived from alignment at sc0000269:141817..147979+ (Clytia hemisphaerica)
tttgtttaaatctatcgatggctttatgggcagcttcccctagaagttta
gAGTATcatgcttattatgtgaagtttttttcaatttttcatgacaaggc
tattatatttcaatatacttgctAAAAAtctaatgtcttttcattcatct
taaatattcccacgagtatacccaaaattaatcatcttattcccaaagca
actaaacagctgtttgcttccgatgataaatcagaatagaacaaaaggca
ttgactctccatctatctttattaccttcatgattCAATTCACCCTAATG
GTcgatgttttcattttagttcgAAGACCACGAGAAGCAGTCCATGACTC
TGCTCATCTGTTGTATCTGTCAAAGAAATCAAGAGAGCAAGCACAAGAAC
TCAAAACTGATATTGTTGCATTTGATAATGTAACATTCATCAAAAAACTG
GTACACCTTATGGGAACTTATTTTCGTGATGCTAGATTTGCCAACATTTg
agtttttcatgattttctaaaataaaaacccttTGTTTTTGTCTAAAATC
ACCTTTTTTAGACAATAAAAGCTAATTTACCATACCCTTTGCAAAAATTA
GTACtattcaatattaaaaaatcgCTGCTTCACCAAATAACTTCCTCGCC
AAATTAATGTTTAGGGTTTTTGCTGCTCCTAGTTGAGACAATAGCCTGAG
AACTCAAAATGtgtaaatcacaaaaaatttgTACAGCTACTTGAAATAAT
TTAAAACCAAGCTGGCACATTATTATGGAGAGTTTTGTTAAACAGTTCTA
ATGAGCAGCCAGCTTGGCTTATGTCCAAAATATTCAGTAACTTGCATTTT
CAGAGGAAATGTATTCATTTGAATTAAgagcaaactttttgattgttAGC
CATAGGGTTGTTATTTTCAAATACAGTTATGACTCTGACTATGAAATCAC
TATTTCCCTATTTCACTAGATTGGTTCAGTGAATGGATATCAACTCACTG
GATGTTCCGANAATACAGTTATGACTCTGACTATGAAATCACTATTTCCC
TATTTCACTAGATTGGTTCAGTGAATGGATATCAACTCACTGGATGTTCC
GAAGAAGATGATGATGAAATAGACCTTCCCAAAGATGCCTGGAAAACACT
TGGAAGAAAGGCTGTATCACTTTTCAAGAAGGCCCCAGCATTCGAATTCC
TGTatgattttactttctttttataatttatttcttGCTAAATTATTTCA
CGATTTATTTTACTATCCTATGGAAATCATTCTCAAGGGCGGGAATTAGT
CTAATTAAAATTTCCTCACAATTTGGAAATTCTCAGCTTAAAAGAGCATC
GGTTGATATTAATAATGTTAtattctcttttattttttttctaagacTGG
GACCATTGGTAATTGAAGTTCAAGTCAAAGAAAAGGTTGTTCGCCAAAGA
AAGAAGGATGAAAATGTCGCCACTAAAAAATTGGAACAGGTTTCATTTTA
TTTCCTTTGTGTTCCTTCATCACTCAAACTACGGGGTTTAATctaaagta
aataaaataataattttttttgaaatcaagaATTATTTATATATAATAAA
TTACAATAGAATGCCTTTAAGAAATTTTAACAACACGATCTTAAGACAAA
TTATATGATAAGAATTTCTCGATGTCTCTCGTCAGaaccagtgtttttta
taaaaagctcCAGAAATCGAGATGACAAGATAATCGTTAAAAGAATGGCT
CTAGGTAGCCAAGGGAACGTTCCCGACAAAACTACCCCTAATGTAGGaga
tatataatattttcaacaCTATCAGCTCCCAATCTTTATGGGCCTTTTTA
GGGTGTCCTAAAGTGTATGGATATTCAAATCAAATCCTAGACAGAAATGA
AAACTTCTGAATACATAATTAAAATCGACGAAATCGAAAGTTTCTTATAG
TCCAGGGAAAGTGTGCTAAAAATGAATACAATTGTGCATTTTTgactaga
aagcatgaaatttggtatgtacagtggtaccttagggggtaagaaacatt
ttaagcctctgacccacttccgaaacacctgtttgtgtattttacagacc
agaatgcctcccaggcaagaaaaaacatgtcatatgatatatcgttggaa
tggttttctcacactgattctaaaaaacatcacaacatatatctgcaaat
ggactgggtccgagttatgggctacggaagtaatttacagaccagtctgc
atgcccgaaaattttttttacttttgttccaaaacacgtcatatcatata
ccgttggaaaggttttttcatactgattttaaaaatcatcatgatatgca
tctcaaaatggactgggtccgtGAAATAAGCCATAGGAGTTATTGACAGA
CCAGAACGGCTCCCGGGCAtacacaaaatatttttatctccaaaaCATGT
CATGTTATATACCGTTTGAAAGGTTTTTTCagactgattctaaaaaaggc
tattctggtctgtaaaatactctCATGGCCTATAACTCAGACCCAGTCCA
TTTTGAGATACATATCAtgatgatttttagaatcagcgtgagaaaacctt
tccaacggtatatgatatgacatgttttggaacaaaaataaaaaaaaatt
tcgggcATGCAGACTAGTCTATAAATTACTTccgtaaaattatttttctt
gcctgggaggcattctggtctgtaaaatacacaaacaggtgttccGGAAG
TGGGTtagaggcttaaaatgtttcttaccccctaaggtaccactgtacca
aatttcatgctttctagtcAAAAACGCACAATTGATGCACACTTTCCCTG
GACTATTAAAAATGTCTACCCATCAAAATATTTGGATTGTCAATTTTTCA
TGAACAGACTTTAGAAAGACAGACAAAACTTTTTGCTTAGCTTCATAAGG
ACAAATGATATTATGAAGTACCACAACGGTGAAAATATGTTGTTCCAAAA
TATCTGCAGCTTTTGAGGCATAATAAATAGTGCCAACGTTCGAGATGTCG
TACATGTAAACAACTGGTCGCATTTGGATAACAGAAATAAGCAAACCCAA
CTGACAGTATCCAGTCGTTTCAACAGAAACATTGATCGTTTATAGCGGCA
TAATTTGCTAGGTTAAGATAGTTGTTATATACAAGATCCAATATATGGGG
TTGGTTAGATACACTGAGATTGCAGCAATGATAAAACGCTCCCTAAACTA
CCATCAATCCCACCAAATATATTTCTTCTCATTGTAAGGCTGGTGGTATG
TACTTTACCAATTGAATAGCGCTTTTTCAATGGACAATGTCAAAAAGTTT
CGAATTTTTCTTCATATTGAATTTACTTAAATCACTAGGCTAGAAAAGAT
AAGTATCTAACATGTTCTCAAAAGTCCTTTTCTGCCGCTGAATACAGGGT
TCGATTGCTTTCTTGGTTAAATACAAGGTTCCCCTCTTGATCTCATTTTC
AGCTCAAGTCCTGACTTGTAATGATATGTTTGTTCTTCCTACAGATTGTC
AGCGttgaaaaacaagaagaagCCACTACGAAAGAGGTGGACAGAATtta
caaaatcttgaaaaagaaaaccaaagatGGGTCTCGTCCTATCTGTTTCT
TCAACTTTGCAGTCAATCCTGAATCGTTTGGTCAAACTgttgaaaatata
ttccatATCGCTTTCCTCATAAAAGTAAGTAGTGTTTgttgtttatttac
tttataTTTTGCAAGACCTTGTCAACCCTTTTGGCTAAACAAATTATTCT
AAGAAATAAGTGTACCAAGGATGTAAATTGCCTTCTTTAATTTATCGAAT
TCATACTTGAATAAATAGATTTTATTACTGGTGAACATCTTAGATAGAGT
AGATATTTTACCTGGATAGCCATGTTATCTCGGACTCTTAgtcagtcttt
cgattgttttcacatGGTCCACGGTCCGTCGGCCTAGCAATTAGAGAGTT
TCCAAAATCACATTGAGAACGGTGACGGCGACGTGAGTGGTCTTTACCGT
CGTCGTTGTCGTCAGCAGTCTTCTACATTCGAATTTCGCTTTCTTTTCTC
ACACACCGTAAAGTATAATTCATTTCTCATTCATAATTACAAAATATCTA
TTGTGTAGCTTTATGGCTTTTAATGGAATTCAATAATATTGGcgggaaaa
aatcaaaacattcgattttcttccttttttcaaaacatagaaaaaaaaca
tgcgattttttttttcaaaattctcagaGCAATAAGTGTGGAGAACTGTC
TTTGTAATCAAGTATATCATTTGGATTTGCATTACTAGCCATCTTGTCTt
gtttgttgttatttttgtcTTATTTGTGTCTTGAGAGTTGAAGTCCCGCC
CGAAAAAATAGAACGTTTCAAGGGGTTTCCTCGGAGGTTCAAGCATGCGT
TCTCGCTGTGATTTTGGAACTGTTTATTTATGAACtgagaaaaacatttg
aagGAACGGGGATTCGGGCTCGAGAAGCTGATCCGTCGTTGACCACTTGG
CTATTGCTCTCTAAATGAGTACCGTCGATTTTTACTCACTTTTCAGGACA
GTCGTGTGATCGTTGACTTTGACGAGGACGACATCCCGACAATTAGTAAG
TCTCACTCTTCATattctactctcgggtacctcgCTGGTCTAACTGGCTG
GATGGCTTGATCTTAATATTGATAAATGTGTTGGAACGAATCGCTTTGAA
AAAATGCTGAGCTAGCAAAAGAATTGTAGTTTTTAAAACGCACCATTAGA
AAAAATATTGCGTGTTTCGTCAGTTGATTGtttgacaaaaaaatgtttga
aatgtttAAAATGTTTAATGTTTAAAATTACATAATACTTGCACTGGAAA
CCCTGTACCAAGCTTTacttgatcggagtttttttcgAAAGTGGTACCCA
CAAAGAAGTCATTACAATGTTAAAGATTAACGTCTAGTGatgctacatca
tcaaaagtatgcgaggaaaagtagatctagcgctttcgatgcatttacac
cgctattagGTAATGCTACCATTAAAACTCAGATCAAAGAATTtggttgg
ccgggattgagaaactgccTCCGAGGTCAAAGCTCAGTGAATACAGACCA
TTAATTTAGAACGCCTTGACATAAAAAAATGTTGAGTAAGAAAATAAACG
AATGGGGTCTACATTTATATATTTTGCACGTAGCCTCATATACTACTTTG
GCTTTAATGTAGAGAAATTTCTTTATAATTGATTTTCTCGTTCTATGATG
TAATTTTCGCTGACATTGAAACTTTTGTTTCTTGGTAGATTTGAATAAGA
ATCGAACGGAAGAACATACATCAGAAACGCAACGTAGACAGGTGGTCATG
CCTCTCACCATGAAAGAATGGAAGGTAGGCCAATATTGTTTTACTACAAA
ACACTCTGATCGTAACTTTGTCGTAAAGTTAAAAAGAATAAGAGCTGTAA
GGATGCACATAAGGTTATCCATTTTTTCTTTGATACTTCACGGCAAGCTC
ATGGGATGTTAAACAACGATTAACCTGGTGAAGAAGTGGAaagttttggg
atttttcctCCATTTTGAACGTTAGTTCGTTGGTTTAACCCTgatatata
aatttttgttttactttctcattatatgttcccatggaaattcaaaacca
atttttgccaagctggcaacTATTCTTAAAAGACTTTTTTTAGGAGCTTA
GAAAAAACTTGTAAAGACTGTGTAAAGGCACTTATGTGCTGCTTATCAAT
CAGAAATGAACATTCATCGCTTTATTATTCCTAGGAACTGGTTGAAGTGT
ACGATATTCAGGAATCAACGATACCAACTCGAGCTAAAATTCATTGAAGG
ACATTGTTTAAATACATCAAAGAACTCTTTATTTCGCTTCGTGCTGGATT
GATTTGGCCTGATTGCAGCAGGTACGCTCATAActaaaaaaacgaaaaca
ttCAATTCCTGGGATATCTAAGGGTTAAAAGAGGACtgtaagtaatagtt
atcggacagttgcgagtacaatatgagaaatattttacgagctccgagat
ttttccgtacaatattcggaaaatccggaacgagtgaaatatttccatat
tgtacgagcaact

Coding sequence (CDS) from alignment at sc0000269:141817..147979+

>TCONS_00017493 ID=TCONS_00017493|Name=TCONS_00017493|organism=Clytia hemisphaerica|type=CDS|length=5880bp|location=Sequence derived from alignment at sc0000269:141817..147979+ (Clytia hemisphaerica)
atgataaatcagaatagaacaaaaggcattgactctccatctatctttat
taccttcatgattCAATTCACCCTAATGGTcgatgttttcattttagttc
gAAGACCACGAGAAGCAGTCCATGACTCTGCTCATCTGTTGTATCTGTCA
AAGAAATCAAGAGAGCAAGCACAAGAACTCAAAACTGATATTGTTGCATT
TGATAATGTAACATTCATCAAAAAACTGATTGGTTCAGTGAATGGATATC
AACTCACTGGATGTTCCGAAGAAGATGATGATGAAATAGACCTTCCCAAA
GATGCCTGGAAAACACTTGGAAGAAAGGCTGTATCACTTTTCAAGAAGGC
CCCAGCATTCGAATTCCTacTGGGACCATTGGTAATTGAAGTTCAAGTCA
AAGAAAAGGTTGTTCGCCAAAGAAAGAAGGATGAAAATGTCGCCACTAAA
AAATTGGAACAGATTGTCAGCGttgaaaaacaagaagaagCCACTACGAA
AGAGGTGGACAGAATttacaaaatcttgaaaaagaaaaccaaagatGGGT
CTCGTCCTATCTGTTTCTTCAACTTTGCAGTCAATCCTGAATCGTTTGGT
CAAACTgttgaaaatatattccatATCGCTTTCCTCATAAAAGACAGTCG
TGTGATCGTTGACTTTGACGAGGACGACATCCCGACAATTAATTTGAATA
AGAATCGAACGGAAGAACATACATCAGAAACGCAACGTAGACAGGTGGTC
ATGCCTCTCACCATGAAAGAATGGAAGGAACTGGTTGAAGTGTACGATAT
TCAGGAATCAACGATACCAACTCGAGCTAAAATTCATTGAatgataaatc
agaatagaacaaaaggcattgactctccatctatctttattaccttcatg
attCAATTCACCCTAATGGTcgatgttttcattttagttcgAAGACCACG
AGAAGCAGTCCATGACTCTGCTCATCTGTTGTATCTGTCAAAGAAATCAA
GAGAGCAAGCACAAGAACTCAAAACTGATATTGTTGCATTTGATAATGTA
ACATTCATCAAAAAACTGATTGGTTCAGTGAATGGATATCAACTCACTGG
ATGTTCCGAAGAAGATGATGATGAAATAGACCTTCCCAAAGATGCCTGGA
AAACACTTGGAAGAAAGGCTGTATCACTTTTCAAGAAGGCCCCAGCATTC
GAATTCCTacTGGGACCATTGGTAATTGAAGTTCAAGTCAAAGAAAAGGT
TGTTCGCCAAAGAAAGAAGGATGAAAATGTCGCCACTAAAAAATTGGAAC
AGATTGTCAGCGttgaaaaacaagaagaagCCACTACGAAAGAGGTGGAC
AGAATttacaaaatcttgaaaaagaaaaccaaagatGGGTCTCGTCCTAT
CTGTTTCTTCAACTTTGCAGTCAATCCTGAATCGTTTGGTCAAACTgttg
aaaatatattccatATCGCTTTCCTCATAAAAGACAGTCGTGTGATCGTT
GACTTTGACGAGGACGACATCCCGACAATTAATTTGAATAAGAATCGAAC
GGAAGAACATACATCAGAAACGCAACGTAGACAGGTGGTCATGCCTCTCA
CCATGAAAGAATGGAAGGAACTGGTTGAAGTGTACGATATTCAGGAATCA
ACGATACCAACTCGAGCTAAAATTCATTGAatgataaatcagaatagaac
aaaaggcattgactctccatctatctttattaccttcatgattCAATTCA
CCCTAATGGTcgatgttttcattttagttcgAAGACCACGAGAAGCAGTC
CATGACTCTGCTCATCTGTTGTATCTGTCAAAGAAATCAAGAGAGCAAGC
ACAAGAACTCAAAACTGATATTGTTGCATTTGATAATGTAACATTCATCA
AAAAACTGATTGGTTCAGTGAATGGATATCAACTCACTGGATGTTCCGAA
GAAGATGATGATGAAATAGACCTTCCCAAAGATGCCTGGAAAACACTTGG
AAGAAAGGCTGTATCACTTTTCAAGAAGGCCCCAGCATTCGAATTCCTac
TGGGACCATTGGTAATTGAAGTTCAAGTCAAAGAAAAGGTTGTTCGCCAA
AGAAAGAAGGATGAAAATGTCGCCACTAAAAAATTGGAACAGATTGTCAG
CGttgaaaaacaagaagaagCCACTACGAAAGAGGTGGACAGAATttaca
aaatcttgaaaaagaaaaccaaagatGGGTCTCGTCCTATCTGTTTCTTC
AACTTTGCAGTCAATCCTGAATCGTTTGGTCAAACTgttgaaaatatatt
ccatATCGCTTTCCTCATAAAAGACAGTCGTGTGATCGTTGACTTTGACG
AGGACGACATCCCGACAATTAATTTGAATAAGAATCGAACGGAAGAACAT
ACATCAGAAACGCAACGTAGACAGGTGGTCATGCCTCTCACCATGAAAGA
ATGGAAGGAACTGGTTGAAGTGTACGATATTCAGGAATCAACGATACCAA
CTCGAGCTAAAATTCATTGAatgataaatcagaatagaacaaaaggcatt
gactctccatctatctttattaccttcatgattCAATTCACCCTAATGGT
cgatgttttcattttagttcgAAGACCACGAGAAGCAGTCCATGACTCTG
CTCATCTGTTGTATCTGTCAAAGAAATCAAGAGAGCAAGCACAAGAACTC
AAAACTGATATTGTTGCATTTGATAATGTAACATTCATCAAAAAACTGAT
TGGTTCAGTGAATGGATATCAACTCACTGGATGTTCCGAAGAAGATGATG
ATGAAATAGACCTTCCCAAAGATGCCTGGAAAACACTTGGAAGAAAGGCT
GTATCACTTTTCAAGAAGGCCCCAGCATTCGAATTCCTacTGGGACCATT
GGTAATTGAAGTTCAAGTCAAAGAAAAGGTTGTTCGCCAAAGAAAGAAGG
ATGAAAATGTCGCCACTAAAAAATTGGAACAGATTGTCAGCGttgaaaaa
caagaagaagCCACTACGAAAGAGGTGGACAGAATttacaaaatcttgaa
aaagaaaaccaaagatGGGTCTCGTCCTATCTGTTTCTTCAACTTTGCAG
TCAATCCTGAATCGTTTGGTCAAACTgttgaaaatatattccatATCGCT
TTCCTCATAAAAGACAGTCGTGTGATCGTTGACTTTGACGAGGACGACAT
CCCGACAATTAATTTGAATAAGAATCGAACGGAAGAACATACATCAGAAA
CGCAACGTAGACAGGTGGTCATGCCTCTCACCATGAAAGAATGGAAGGAA
CTGGTTGAAGTGTACGATATTCAGGAATCAACGATACCAACTCGAGCTAA
AATTCATTGAatgataaatcagaatagaacaaaaggcattgactctccat
ctatctttattaccttcatgattCAATTCACCCTAATGGTcgatgttttc
attttagttcgAAGACCACGAGAAGCAGTCCATGACTCTGCTCATCTGTT
GTATCTGTCAAAGAAATCAAGAGAGCAAGCACAAGAACTCAAAACTGATA
TTGTTGCATTTGATAATGTAACATTCATCAAAAAACTGATTGGTTCAGTG
AATGGATATCAACTCACTGGATGTTCCGAAGAAGATGATGATGAAATAGA
CCTTCCCAAAGATGCCTGGAAAACACTTGGAAGAAAGGCTGTATCACTTT
TCAAGAAGGCCCCAGCATTCGAATTCCTacTGGGACCATTGGTAATTGAA
GTTCAAGTCAAAGAAAAGGTTGTTCGCCAAAGAAAGAAGGATGAAAATGT
CGCCACTAAAAAATTGGAACAGATTGTCAGCGttgaaaaacaagaagaag
CCACTACGAAAGAGGTGGACAGAATttacaaaatcttgaaaaagaaaacc
aaagatGGGTCTCGTCCTATCTGTTTCTTCAACTTTGCAGTCAATCCTGA
ATCGTTTGGTCAAACTgttgaaaatatattccatATCGCTTTCCTCATAA
AAGACAGTCGTGTGATCGTTGACTTTGACGAGGACGACATCCCGACAATT
AATTTGAATAAGAATCGAACGGAAGAACATACATCAGAAACGCAACGTAG
ACAGGTGGTCATGCCTCTCACCATGAAAGAATGGAAGGAACTGGTTGAAG
TGTACGATATTCAGGAATCAACGATACCAACTCGAGCTAAAATTCATTGA
atgataaatcagaatagaacaaaaggcattgactctccatctatctttat
taccttcatgattCAATTCACCCTAATGGTcgatgttttcattttagttc
gAAGACCACGAGAAGCAGTCCATGACTCTGCTCATCTGTTGTATCTGTCA
AAGAAATCAAGAGAGCAAGCACAAGAACTCAAAACTGATATTGTTGCATT
TGATAATGTAACATTCATCAAAAAACTGATTGGTTCAGTGAATGGATATC
AACTCACTGGATGTTCCGAAGAAGATGATGATGAAATAGACCTTCCCAAA
GATGCCTGGAAAACACTTGGAAGAAAGGCTGTATCACTTTTCAAGAAGGC
CCCAGCATTCGAATTCCTacTGGGACCATTGGTAATTGAAGTTCAAGTCA
AAGAAAAGGTTGTTCGCCAAAGAAAGAAGGATGAAAATGTCGCCACTAAA
AAATTGGAACAGATTGTCAGCGttgaaaaacaagaagaagCCACTACGAA
AGAGGTGGACAGAATttacaaaatcttgaaaaagaaaaccaaagatGGGT
CTCGTCCTATCTGTTTCTTCAACTTTGCAGTCAATCCTGAATCGTTTGGT
CAAACTgttgaaaatatattccatATCGCTTTCCTCATAAAAGACAGTCG
TGTGATCGTTGACTTTGACGAGGACGACATCCCGACAATTAATTTGAATA
AGAATCGAACGGAAGAACATACATCAGAAACGCAACGTAGACAGGTGGTC
ATGCCTCTCACCATGAAAGAATGGAAGGAACTGGTTGAAGTGTACGATAT
TCAGGAATCAACGATACCAACTCGAGCTAAAATTCATTGAatgataaatc
agaatagaacaaaaggcattgactctccatctatctttattaccttcatg
attCAATTCACCCTAATGGTcgatgttttcattttagttcgAAGACCACG
AGAAGCAGTCCATGACTCTGCTCATCTGTTGTATCTGTCAAAGAAATCAA
GAGAGCAAGCACAAGAACTCAAAACTGATATTGTTGCATTTGATAATGTA
ACATTCATCAAAAAACTGATTGGTTCAGTGAATGGATATCAACTCACTGG
ATGTTCCGAAGAAGATGATGATGAAATAGACCTTCCCAAAGATGCCTGGA
AAACACTTGGAAGAAAGGCTGTATCACTTTTCAAGAAGGCCCCAGCATTC
GAATTCCTacTGGGACCATTGGTAATTGAAGTTCAAGTCAAAGAAAAGGT
TGTTCGCCAAAGAAAGAAGGATGAAAATGTCGCCACTAAAAAATTGGAAC
AGATTGTCAGCGttgaaaaacaagaagaagCCACTACGAAAGAGGTGGAC
AGAATttacaaaatcttgaaaaagaaaaccaaagatGGGTCTCGTCCTAT
CTGTTTCTTCAACTTTGCAGTCAATCCTGAATCGTTTGGTCAAACTgttg
aaaatatattccatATCGCTTTCCTCATAAAAGACAGTCGTGTGATCGTT
GACTTTGACGAGGACGACATCCCGACAATTAATTTGAATAAGAATCGAAC
GGAAGAACATACATCAGAAACGCAACGTAGACAGGTGGTCATGCCTCTCA
CCATGAAAGAATGGAAGGAACTGGTTGAAGTGTACGATATTCAGGAATCA
ACGATACCAACTCGAGCTAAAATTCATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009791XLOC_009791Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017493-proteinTCONS_00017493-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017493-exon-sc0000269-1491911889:141817..142266TCONS_00017493-exon-sc0000269-1491911889:141817..142266Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1510915933:141817..142266TCONS_00017493-exon-sc0000269-1510915933:141817..142266Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1575043694:141817..142266TCONS_00017493-exon-sc0000269-1575043694:141817..142266Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1491911889:142878..143017TCONS_00017493-exon-sc0000269-1491911889:142878..143017Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1510915933:142878..143017TCONS_00017493-exon-sc0000269-1510915933:142878..143017Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1575043694:142878..143017TCONS_00017493-exon-sc0000269-1575043694:142878..143017Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1491911889:143212..143305TCONS_00017493-exon-sc0000269-1491911889:143212..143305Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1510915933:143212..143305TCONS_00017493-exon-sc0000269-1510915933:143212..143305Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1575043694:143212..143305TCONS_00017493-exon-sc0000269-1575043694:143212..143305Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1491911889:145361..145540TCONS_00017493-exon-sc0000269-1491911889:145361..145540Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1510915933:145361..145540TCONS_00017493-exon-sc0000269-1510915933:145361..145540Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1575043694:145361..145540TCONS_00017493-exon-sc0000269-1575043694:145361..145540Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1491911889:146413..146461TCONS_00017493-exon-sc0000269-1491911889:146413..146461Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1510915933:146413..146461TCONS_00017493-exon-sc0000269-1510915933:146413..146461Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1575043694:146413..146461TCONS_00017493-exon-sc0000269-1575043694:146413..146461Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1491911889:147155..147240TCONS_00017493-exon-sc0000269-1491911889:147155..147240Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1510915933:147155..147240TCONS_00017493-exon-sc0000269-1510915933:147155..147240Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1575043694:147155..147240TCONS_00017493-exon-sc0000269-1575043694:147155..147240Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1491911889:147651..147979TCONS_00017493-exon-sc0000269-1491911889:147651..147979Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1510915933:147651..147979TCONS_00017493-exon-sc0000269-1510915933:147651..147979Clytia hemisphaericaexon
TCONS_00017493-exon-sc0000269-1575043694:147651..147979TCONS_00017493-exon-sc0000269-1575043694:147651..147979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:141817..147979 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
121.508	115.201	132.828	129.738	26.1954	20.4878	17.2299	18.4967	19.6329	17.545	10.0504	10.6366	6.33141	6.29082	8.95594	8.35935	15.2056	14.9479	2.38632	3.11636	10.8687	11.5757	48.573	39.9093	17.3287	18.4462	5.90326	5.06665	20.9134	23.8835
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014854Nse4_C
IPR029225Nse4_Nse3-bd
Blast
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BLAST of TCONS_00017493 vs. Swiss-Prot (Human)
Match: NSE4A (Non-structural maintenance of chromosomes element 4 homolog A OS=Homo sapiens GN=NSMCE4A PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 4.261e-31
Identity = 86/260 (33.08%), Postives = 146/260 (56.15%), Query Frame = 1 
Query:  307 VFILVRRPREAVHDSAHLLYLSKKSREQAQELKTDIVAFDNVTFIKKLIGSVNGYQLTGCSEE---DDDEIDLP---KDAWKTLGRKAVSLFKKAPAFEFLLGPL-----VIXXXXXXXXXXXXXXDENVATKKLEQIVSVEKQEEATTKEVDRIYKILKKKTK-DGSRPICFFNFAVNPESFGQTVENIFHIAFLIKDSRVIVDFDEDDIPTI---NLN-KNRTEEHTSETQRRQVVMPLTMKEWKELVEVYDIQESTI 1038
            +F  V R REAV D+  L+  S   +E+A++L++D+ +FD + +++ L+  +    L   +EE   D+D  D      D+WK  GR A + F K   F FLLG +     V + +V         ++E     +L ++   E  +EAT KEV+RI  +L+   + D   P+ FF+F V+P SF +TVENIFH++F+I+D    +  D+D +P I   ++N +N   EH ++  R Q ++ L+ ++W+E+V+ ++I E  I
Sbjct:  120 LFNEVSRAREAVLDAHFLVLASDLGKEKAKQLRSDLSSFDMLRYVETLLTHMGVNPLE--AEELIRDEDSPDFEFIVYDSWKITGRTAENTFNKTHTFHFLLGSIYGECPVPKPRVDRPRKVPVIQEERAMPAQLRRME--ESHQEATEKEVERILGLLQTYFREDPDTPMSFFDFVVDPHSFPRTVENIFHVSFIIRDGFARIRLDQDRLPVIEPVSINEENEGFEHNTQV-RNQGIIALSYRDWEEIVKTFEISEPVI 374
The following BLAST results are available for this feature:
BLAST of TCONS_00017493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NSE4A4.261e-3133.08Non-structural maintenance of chromosomes element ... [more]
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