TCONS_00017493-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00017493-protein
Unique Name	TCONS_00017493-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	279

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00017493-protein ID=TCONS_00017493-protein|Name=TCONS_00017493-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
MINQNRTKGIDSPSIFITFMIQFTLMVDVFILVRRPREAVHDSAHLLYLS
KKSREQAQELKTDIVAFDNVTFIKKLIGSVNGYQLTGCSEEDDDEIDLPK
DAWKTLGRKAVSLFKKAPAFEFLLGPLVIEVQVKEKVVRQRKKDENVATK
KLEQIVSVEKQEEATTKEVDRIYKILKKKTKDGSRPICFFNFAVNPESFG
QTVENIFHIAFLIKDSRVIVDFDEDDIPTINLNKNRTEEHTSETQRRQVV
MPLTMKEWKELVEVYDIQESTIPTRAKIH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_009791	XLOC_009791	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00017493	TCONS_00017493	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014854	Nse4_C
IPR029225	Nse4_Nse3-bd

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014854	Non-structural maintenance of chromosome element 4, C-terminal	PFAM	PF08743	Nse4_C	coord: 186..273 e-value: 2.4E-29 score: 101.3
IPR029225	Nse4/EID protein, Nse3/MAGE-binding domain	PFAM	PF15412	Nse4-Nse3_bdg	coord: 42..94 e-value: 2.2E-4 score: 21.2

Blast

[Close]

BLAST of TCONS_00017493-protein vs. Swiss-Prot (Human)
Match: NSE4A (Non-structural maintenance of chromosomes element 4 homolog A OS=Homo sapiens GN=NSMCE4A PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.182e-37
Identity = 91/260 (35.00%), Postives = 150/260 (57.69%), Query Frame = 0

Query:   29 VFILVRRPREAVHDSAHLLYLSKKSREQAQELKTDIVAFDNVTFIKKLIGSVNGYQLTGCSEE---DDDEIDLP---KDAWKTLGRKAVSLFKKAPAFEFLLGPLVIEVQV-KEKVVRQRK----KDENVATKKLEQIVSVEKQEEATTKEVDRIYKILKKKTK-DGSRPICFFNFAVNPESFGQTVENIFHIAFLIKDSRVIVDFDEDDIPTI---NLN-KNRTEEHTSETQRRQVVMPLTMKEWKELVEVYDIQESTI 272
            +F  V R REAV D+  L+  S   +E+A++L++D+ +FD + +++ L+  +    L   +EE   D+D  D      D+WK  GR A + F K   F FLLG +  E  V K +V R RK    ++E     +L ++   E  +EAT KEV+RI  +L+   + D   P+ FF+F V+P SF +TVENIFH++F+I+D    +  D+D +P I   ++N +N   EH ++  R Q ++ L+ ++W+E+V+ ++I E  I
Sbjct:  120 LFNEVSRAREAVLDAHFLVLASDLGKEKAKQLRSDLSSFDMLRYVETLLTHMGVNPLE--AEELIRDEDSPDFEFIVYDSWKITGRTAENTFNKTHTFHFLLGSIYGECPVPKPRVDRPRKVPVIQEERAMPAQLRRME--ESHQEATEKEVERILGLLQTYFREDPDTPMSFFDFVVDPHSFPRTVENIFHVSFIIRDGFARIRLDQDRLPVIEPVSINEENEGFEHNTQV-RNQGIIALSYRDWEEIVKTFEISEPVI 374

The following BLAST results are available for this feature:

BLAST of TCONS_00017493-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00017493-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NSE4A	3.182e-37	35.00	Non-structural maintenance of chromosomes element ...	[more]

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TCONS_00017493-protein (polypeptide) - C. hemisphaerica