TCONS_00016442 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016442
Unique NameTCONS_00016442
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016442 ID=TCONS_00016442|Name=TCONS_00016442|organism=Clytia hemisphaerica|type=transcript|length=3258bp
TCAAATCAACTTCAATTTATCATTGACGCGTTCAAGGGACAGGTTTACGC
GCTATCGACACATCCATATGGCTGTCGTGTGATTCAAAGGATCTTGGAGC
ACTGTACCATTGATCAAACGTCTCCCATCCTTGCTGAACTCCATGAACAC
ACAGAGCGCTTAATACAGGACCAATATGGAAATTATGTGATTCAACATGT
TTTAGAACATGGTAGCCCTGACGACAAGTCGGCCATTGTTAATATGGTCA
GAGGAAATGTTTTACTCTTGAGTCAGCACAAATTTGCAAGtaATGTGATT
GAGAAATGTGTAACCCATGCTTCCCGTGCTGAACGTTCAAGACTTATCGA
AGAAGTTTGCAATTATGTTGACGGCCCCCATGGTGCCCTCTACAGTATGA
TGAAGGATCAGTATGCAAATTATGTTGTTCAGAAAATGATTGATGTTGCT
GAGCCCCTTCAAAGAAAGGTTTTGATGATGAAAATTAGACCACATGTTGC
AACACTGCGCAAATATACTTACGGAAAACATATCCTAGCCAAGTTGGAGA
CTTTCGAGAAAGCGTACATGCAGCCAACAGATTTGTTGTTTTTGCCCGCT
ACAACCCAGATTGCACCATTTTAGTTGGATACTGTTTGAAAGAAGTAGTA
TTCTGTATGGTGgttttttttctcaatgttgttgattttttggaaatctt
tatTTTGGATGATTGGGTTATCtttttggtagattttttttctgtcttta
ttttttgtcattttttaaaatgattttagtACCAATAGTTATATAATGAA
CAGATAGAAATTCTTCAATTACGGTTGATTTTTAAAGACCTATTGCTGAA
TTTCTTACCATATTTTTCATTTAGCTTTATATTGTTTATATTATTACATA
CTCTATATACATAATGTCTaacaaattttgatttgtttattaCTTTATAT
TTTGCTTTATATTGACTTAACGGTGATGGCTTTTAACATTTTATCAGact
taaaatgtcattttaacCCTTGTGATATTATGTCTCAGGGTATTAGATTT
AACGGTCAGTATacttaatttttgttttaagtttgtttttgattttcact
ttttagtagtgaatttttgtttatttttgattatataTTTGATTTGATGC
AGATAggattttgaaatctttgataCGACCCCTTTAACAGTAATATTGTG
TagttaaaaattatatatagcAGTAATGATTTTCTTATAGAATTTTATTT
GTTTCTATTTTGGgttgattttttgtttatgaTCTCTTTATAACTAACCC
CTCTTGGAAGAGTGGTATTTGGAATTCTCCCAGCAAACAAAATTGGTTAT
TGTTGTATATTCGATGACCACAAATACAGAACCACAGGTACGTATCGTTT
ACTTCACCCCatatataaatttttgattATGTATATTGACTTAAGTCCAC
TTATTATGCCCCTATTAGGTTAAGCATTCTCTTTGCATTTCTCTGCTATT
GATGTATAGTGATAGTTTGTCAGGTTGAATGGATAAATTCAAGATGATAT
GTGCACTGCCCTGCATAACATAAACTCCCTTTTACAACTAAACTGATTGG
TTGCATGTGACTTATTCTGTGAAGAAAGGCCATAACATTTAATGATCTTG
TGAAGTCACTGCAGTGGTGCATGTCCTGAATTTTGAATTTACTGTTCTGC
CTGAACAAACTTGATTGATTGTCATGTACAGGGGACCCTTTGCACTTCTA
CTACGATCTTGTAAGTTGTAATTGTGTTTATATGAACATATGTAAATATG
AAGGAAAAAGCATATGTACAttgtcaaaagaaaaaacagcATTTTTTTAC
GGAAATTTTATTGTGTTTTTGTTTAGGTGGAAAAACTACTTTTTTGAGCA
TGGTATATATGTAATTAAAAACAGGCAATAAAAGTAATATTTTATTTCAC
TATCAACCCCCTCCTGACCCTGAAATTTTGGATTAGCGAGTTTAATGTGT
TTTTTCGAATCTTTAAAACAAGAGAAAGTTTTAATGGCTTGTTTTAGTTT
TGTAAATGGTACTTTTTTAAAGGTTCGTCCAATTGCCCCCTTTTCCCTAA
ATGATATATATTTAGTGTTTCGAATATTTTAATCTGTTTTTGGTGTTTAT
AAGTCCCTTATATGAGAAAATCCAacaattttttggtgttttatgCTATT
GTACATTTTTAAGTGTACATTATTGGCTTTACCATGTttgatttgaatat
ttgctATATTGTAACAGTTTGTTCTTCCAATGAATGGCTTTAAGCTGTTA
TACAAATCCATTAAGTTATCAAGTTGCATGTTACAAACTCTTTTAACCTG
TAAAATGATTTTTGTATAGACTATGTATAGATCGCTTGCACGTATTTTTA
ATGAATCATACTAATTAGTGCACCTTTAATTAAAGTGAAAACGCACTGTA
TAAACAATGTATGTATAAGACCCAcaagttttttgttgttgaaaattGAT
GCTGTTGGTGTATAGAGGAAAAGAAGGACCTAATAAAGTCACTCGTGCAT
TTATTGATAGTGTATACTTTATCATAATATTTTTAGAattgaacaaaaaa
acaatGTTTATTAGTACCCTCTTGTatgtaaaacttgaaaaaaccaCAAT
ATTGTAAAGATTGTATCAAAAAAACAAACCTAACGTAATGATAATTTAGG
ATTAAACACAAGGAAACTAAGCTTCCAAGCGATGATTACCATGAACGGGC
GAGCAACTCtctttttttataggaactGGTTATTGCTGAGCCTCATTCTC
TTCAGAAAAGCTTACATAAAGATTTGTCTCGCTTTTTCTAAGTATGAAAA
GCTTTCGAACTTAGTTTCCCTCATGTATACATATATAATTTAATaccatt
ttgtgattttttttgacatGACATTATCTAAAATACAGTCCAAAAGCTCA
gcaaatttttgaatgaaaatcattttgaaacTTCTCCATCAATGAAATGC
CTATATTATTATCAGGAGTCATGATTAGTTTTTTTATTAAGAACCTAGAA
CAGTTTTTTGGTGTAGTTATATGTGTAAGCTTATATAcaggaaaaattgt
aaaaaaaaatccgaaataatcaactcttttttttttttggaaaaagggCT
TTACAAAACAAATGATGACTTTTCAGTTATTTccattttctattgtttaa
accAATACAGTCTGATTCAAGAAGTGATACCTtgttggaaaaataattta
gaGTGGTT
Run BLAST on NCBI

protein sequence of TCONS_00016442-protein

>TCONS_00016442-protein ID=TCONS_00016442-protein|Name=TCONS_00016442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
SNQLQFIIDAFKGQVYALSTHPYGCRVIQRILEHCTIDQTSPILAELHEH
TERLIQDQYGNYVIQHVLEHGSPDDKSAIVNMVRGNVLLLSQHKFASNVI
EKCVTHASRAERSRLIEEVCNYVDGPHGALYSMMKDQYANYVVQKMIDVA
EPLQRKVLMMKIRPHVATLRKYTYGKHILAKLETFEKAYMQPTDLLFLPA
TTQIAPF
Run BLAST on NCBI

transcript from alignment at sc0000237:405431..409833-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016442 ID=TCONS_00016442|Name=TCONS_00016442|organism=Clytia hemisphaerica|type=transcript|length=4403bp|location=Sequence derived from alignment at sc0000237:405431..409833- (Clytia hemisphaerica)
TCAAATCAACTTCAATTTATCATTGACGCGTTCAAGGGACAGGTAGTCAG
TACAATTCGTCAATCTTACACTTATCTTACTTTGTTATTTTGTTTCTCAT
GACATGCATACCTCAATATTTAAATTGGAAAAATCTATTTGAGAGATGCT
CAAAGGAGGAAGTTCAAGTTTGTTAAAATTCCTCTTACACTTATTTTACT
TTATTTTCTCATTTCTCTTCCAGAAAGAATATGAATATTGGGGGTGGGAT
ATAACATTTTTTGGAATTTAACCCCCTGAACATTGTGACTGCATCAGTTG
ACCCCCCCCCTTTCTGGCAAATGAAGTTCAAGTTTGTAAAAACTCCTTGT
CTTGTATTGCTCAAATATTGTTAGACTTTTCATAATGAATTCATAATGAA
ATGCAAAGATCATTTCCAGGATTATTTTTGACCAAATTAATTCTTTCTTT
ACAGGTTTACGCGCTATCGACACATCCATATGGCTGTCGTGTGATTCAAA
GGATCTTGGAGCACTGTACCATTGATCAAACGTCTCCCATCCTTGCTGAA
CTCCATGAACACACAGAGCGCTTAATACAGGACCAATATGGAAATTATGT
GATTCAACATGTTTTAGAACATGGTAGCCCTGACGACAAGTCGGCCATTG
TTAATATGGTCAGAGGAAATGTTTTACTCTTGAGTCAGCACAAATTTGCA
AGGTAGGTAGTGCTTCTCCTAATTCATGAATATTGATAAGGTAGCCAATC
AGATTCGCGCGTTTCCAATCAAAACAGTAATATTACGTGATTTCAACCAT
TGTTTAACAGCCAATAGAATTCGGCGCCAGGACCTTCATTAATAATCGGC
CTAGTACTGTCTTTCCTCTGTTCTTACGTTAAGTCCGGTACACACGTCGA
ATTTTTTAGACCGTGTAGGCCGAACCTCTCAGCTAGCTCAGAATCAGTCA
GTGAAGTAATCTACAGACAAAGCTTTTACTTGGCACGAATAAACCATTGT
TTTGAAGTACATACTAAATCTCACTTTTCTTTTCTTTTCTTTTTATAGTA
ATGTGATTGAGAAATGTGTAACCCATGCTTCCCGTGCTGAACGTTCAAGA
CTTATCGAAGAAGTTTGCAATTATGTTGACGGGTAAGTTGCTCAACCTTT
TAATTCAAAATTTTCGATAAGATTTCCTTTTGTAAAATGCTTTCATGTGT
CTGTCAGTTGTTGACAATTCATTTCACCAAGAACTATCTAAAGTATCAAA
CTTCCTTTGCTGTATTTGATTCTTTTTTTCTTCATCTCCAGTTGCATCTA
AAATCTATATAAGAAAAAACATAACCCAAAGATCAGCATCCTTCTTAGTT
TTTAAATAAGAAACAACAAGAAAGTGTTCCACCAAAATTTACGAACTTTC
TTGTTGTTTTTTATTTAAAAAACTAAGAAGGATGCTGACCTTCGGGTTAT
GTTTTTTCTTATATTTTTTGAAATTTTCTGGTACTGTTGGATTCTAAAAT
CTATATTCCACCCTTTTAGCCCCCATGGTGCCCTCTACAGTATGATGAAG
GATCAGTATGCAAATTATGTTGTTCAGAAAATGATTGATGTTGCTGAGCC
CCTTCAAAGAAAGGTTTTGATGATGAAAATTAGACCACATGTTGCAACAC
TGCGCAAATATACTTACGGAAAACATATCCTAGCCAAGTTGGAGACTTTC
GAGAAAGCGTACATGCAGCCAACAGATTTGTTGTTTTTGCCCGCTACAAC
CCAGATTGCACCATTTTAGTTGGATACTGTTTGAAAGAAGTAGTATTCTG
TATGGTGGTTTTTTTTCTCAATGTTGTTGATTTTTTGGAAATCTTTATTT
TGGATGATTGGGTTATCTTTTTGGTAGATTTTTTTTCTGTCTTTATTTTT
TGTCATTTTTTAAAATGATTTTAGTACCAATAGTTATATAATGAACAGAT
AGAAATTCTTCAATTACGGTTGATTTTTAAAGACCTATTGCTGAATTTCT
TACCATATTTTTCATTTAGCTTTATATTGTTTATATTATTACATACTCTA
TATACATAATGTCTAACAAATTTTGATTTGTTTATTACTTTATATTTTGC
TTTATATTGACTTAACGGTGATGGCTTTTAACATTTTATCAGACTTAAAA
TGTCATTTTAACCCTTGTGATATTATGTCTCAGGGTATTAGATTTAACGG
TCAGTATACTTAATTTTTGTTTTAAGTTTGTTTTTGATTTTCACTTTTTA
GTAGTGAATTTTTGTTTATTTTTGATTATATATTTGATTTGATGCAGATA
GGATTTTGAAATCTTTGATACGACCCCTTTAACAGTAATATTGTGTAGTT
AAAAATTATATATAGCAGTAATGATTTTCTTATAGAATTTTATTTGTTTC
TATTTTGGGTTGATTTTTTGTTTATGATCTCTTTATAACTAACCCCTCTT
GGAAGAGTGGTATTTGGAATTCTCCCAGCAAACAAAATTGGTTATTGTTG
TATATTCGATGACCACAAATACAGAACCACAGGTACGTATCGTTTACTTC
ACCCCATATATAAATTTTTGATTATGTATATTGACTTAAGTCCACTTATT
ATGCCCCTATTAGGTTAAGCATTCTCTTTGCATTTCTCTGCTATTGATGT
ATAGTGATAGTTTGTCAGGTTGAATGGATAAATTCAAGATGATATGTGCA
CTGCCCTGCATAACATAAACTCCCTTTTACAACTAAACTGATTGGTTGCA
TGTGACTTATTCTGTGAAGAAAGGCCATAACATTTAATGATCTTGTGAAG
TCACTGCAGTGGTGCATGTCCTGAATTTTGAATTTACTGTTCTGCCTGAA
CAAACTTGATTGATTGTCATGTACAGGGGACCCTTTGCACTTCTACTACG
ATCTTGTAAGTTGTAATTGTGTTTATATGAACATATGTAAATATGAAGGA
AAAAGCATATGTACATTGTCAAAAGAAAAAACAGCATTTTTTTACGGAAA
TTTTATTGTGTTTTTGTTTAGGTGGAAAAACTACTTTTTTGAGCATGGTA
TATATGTAATTAAAAACAGGCAATAAAAGTAATATTTTATTTCACTATCA
ACCCCCTCCTGACCCTGAAATTTTGGATTAGCGAGTTTAATGTGTTTTTT
CGAATCTTTAAAACAAGAGAAAGTTTTAATGGCTTGTTTTAGTTTTGTAA
ATGGTACTTTTTTAAAGGTTCGTCCAATTGCCCCCTTTTCCCTAAATGAT
ATATATTTAGTGTTTCGAATATTTTAATCTGTTTTTGGTGTTTATAAGTC
CCTTATATGAGAAAATCCAACAATTTTTTGGTGTTTTATGCTATTGTACA
TTTTTAAGTGTACATTATTGGCTTTACCATGTTTGATTTGAATATTTGCT
ATATTGTAACAGTTTGTTCTTCCAATGAATGGCTTTAAGCTGTTATACAA
ATCCATTAAGTTATCAAGTTGCATGTTACAAACTCTTTTAACCTGTAAAA
TGATTTTTGTATAGACTATGTATAGATCGCTTGCACGTATTTTTAATGAA
TCATACTAATTAGTGCACCTTTAATTAAAGTGAAAACGCACTGTATAAAC
AATGTATGTATAAGACCCACAAGTTTTTTGTTGTTGAAAATTGATGCTGT
TGGTGTATAGAGGAAAAGAAGGACCTAATAAAGTCACTCGTGCATTTATT
GATAGTGTATACTTTATCATAATATTTTTAGAATTGAACAAAAAAACAAT
GTTTATTAGTACCCTCTTGTATGTAAAACTTGAAAAAACCACAATATTGT
AAAGATTGTATCAAAAAAACAAACCTAACGTAATGATAATTTAGGATTAA
ACACAAGGAAACTAAGCTTCCAAGCGATGATTACCATGAACGGGCGAGCA
ACTCTCTTTTTTTATAGGAACTGGTTATTGCTGAGCCTCATTCTCTTCAG
AAAAGCTTACATAAAGATTTGTCTCGCTTTTTCTAAGTATGAAAAGCTTT
CGAACTTAGTTTCCCTCATGTATACATATATAATTTAATACCATTTTGTG
ATTTTTTTTGACATGACATTATCTAAAATACAGTCCAAAAGCTCAGCAAA
TTTTTGAATGAAAATCATTTTGAAACTTCTCCATCAATGAAATGCCTATA
TTATTATCAGGAGTCATGATTAGTTTTTTTATTAAGAACCTAGAACAGTT
TTTTGGTGTAGTTATATGTGTAAGCTTATATACAGGAAAAATTGTAAAAA
AAAATCCGAAATAATCAACTCTTTTTTTTTTTTGGAAAAAGGGCTTTACA
AAACAAATGATGACTTTTCAGTTATTTCCATTTTCTATTGTTTAAACCAA
TACAGTCTGATTCAAGAAGTGATACCTTGTTGGAAAAATAATTTAGAGTG
GTT

Coding sequence (CDS) from alignment at sc0000237:405431..409833-

>TCONS_00016442 ID=TCONS_00016442|Name=TCONS_00016442|organism=Clytia hemisphaerica|type=CDS|length=2496bp|location=Sequence derived from alignment at sc0000237:405431..409833- (Clytia hemisphaerica)
CCCCCATGGTGCCCTCTACAGTATGATGAAGGATCAGTATGCAAATTATG
TTGTTCAGAAAATGATTGATGTTGCTGAGCCCCTTCAAAGAAAGGTTTTG
ATGATGAAAATTAGACCACATGTTGCAACACTGCGCAAATATACTTACGG
AAAACATATCCTAGCCAAGTTGGAGACTTTCGAGAAAGCGTACATGCAGC
CAACAGATTTGTTGTTTTTGCCCGCTACAACCCAGATTGCACCATTTTAG
TAATGTGATTGAGAAATGTGTAACCCATGCTTCCCGTGCTGAACGTTCAA
GACTTATCGAAGAAGTTTGCAATTATGTTGACGGGTTTACGCGCTATCGA
CACATCCATATGGCTGTCGTGTGATTCAAAGGATCTTGGAGCACTGTACC
ATTGATCAAACGTCTCCCATCCTTGCTGAACTCCATGAACACACAGAGCG
CTTAATACAGGACCAATATGGAAATTATGTGATTCAACATGTTTTAGAAC
ATGGTAGCCCTGACGACAAGTCGGCCATTGTTAATATGGTCAGAGGAAAT
GTTTTACTCTTGAGTCAGCACAAATTTGCAAGTCAAATCAACTTCAATTT
ATCATTGACGCGTTCAAGGGACAGCCCCCATGGTGCCCTCTACAGTATGA
TGAAGGATCAGTATGCAAATTATGTTGTTCAGAAAATGATTGATGTTGCT
GAGCCCCTTCAAAGAAAGGTTTTGATGATGAAAATTAGACCACATGTTGC
AACACTGCGCAAATATACTTACGGAAAACATATCCTAGCCAAGTTGGAGA
CTTTCGAGAAAGCGTACATGCAGCCAACAGATTTGTTGTTTTTGCCCGCT
ACAACCCAGATTGCACCATTTTAGTAATGTGATTGAGAAATGTGTAACCC
ATGCTTCCCGTGCTGAACGTTCAAGACTTATCGAAGAAGTTTGCAATTAT
GTTGACGGGTTTACGCGCTATCGACACATCCATATGGCTGTCGTGTGATT
CAAAGGATCTTGGAGCACTGTACCATTGATCAAACGTCTCCCATCCTTGC
TGAACTCCATGAACACACAGAGCGCTTAATACAGGACCAATATGGAAATT
ATGTGATTCAACATGTTTTAGAACATGGTAGCCCTGACGACAAGTCGGCC
ATTGTTAATATGGTCAGAGGAAATGTTTTACTCTTGAGTCAGCACAAATT
TGCAAGTCAAATCAACTTCAATTTATCATTGACGCGTTCAAGGGACAGCC
CCCATGGTGCCCTCTACAGTATGATGAAGGATCAGTATGCAAATTATGTT
GTTCAGAAAATGATTGATGTTGCTGAGCCCCTTCAAAGAAAGGTTTTGAT
GATGAAAATTAGACCACATGTTGCAACACTGCGCAAATATACTTACGGAA
AACATATCCTAGCCAAGTTGGAGACTTTCGAGAAAGCGTACATGCAGCCA
ACAGATTTGTTGTTTTTGCCCGCTACAACCCAGATTGCACCATTTTAGTA
ATGTGATTGAGAAATGTGTAACCCATGCTTCCCGTGCTGAACGTTCAAGA
CTTATCGAAGAAGTTTGCAATTATGTTGACGGGTTTACGCGCTATCGACA
CATCCATATGGCTGTCGTGTGATTCAAAGGATCTTGGAGCACTGTACCAT
TGATCAAACGTCTCCCATCCTTGCTGAACTCCATGAACACACAGAGCGCT
TAATACAGGACCAATATGGAAATTATGTGATTCAACATGTTTTAGAACAT
GGTAGCCCTGACGACAAGTCGGCCATTGTTAATATGGTCAGAGGAAATGT
TTTACTCTTGAGTCAGCACAAATTTGCAAGTCAAATCAACTTCAATTTAT
CATTGACGCGTTCAAGGGACAGCCCCCATGGTGCCCTCTACAGTATGATG
AAGGATCAGTATGCAAATTATGTTGTTCAGAAAATGATTGATGTTGCTGA
GCCCCTTCAAAGAAAGGTTTTGATGATGAAAATTAGACCACATGTTGCAA
CACTGCGCAAATATACTTACGGAAAACATATCCTAGCCAAGTTGGAGACT
TTCGAGAAAGCGTACATGCAGCCAACAGATTTGTTGTTTTTGCCCGCTAC
AACCCAGATTGCACCATTTTAGTAATGTGATTGAGAAATGTGTAACCCAT
GCTTCCCGTGCTGAACGTTCAAGACTTATCGAAGAAGTTTGCAATTATGT
TGACGGGTTTACGCGCTATCGACACATCCATATGGCTGTCGTGTGATTCA
AAGGATCTTGGAGCACTGTACCATTGATCAAACGTCTCCCATCCTTGCTG
AACTCCATGAACACACAGAGCGCTTAATACAGGACCAATATGGAAATTAT
GTGATTCAACATGTTTTAGAACATGGTAGCCCTGACGACAAGTCGGCCAT
TGTTAATATGGTCAGAGGAAATGTTTTACTCTTGAGTCAGCACAAATTTG
CAAGTCAAATCAACTTCAATTTATCATTGACGCGTTCAAGGGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009179XLOC_009179Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016442-exon-sc0000237-1575043694:409792..409833TCONS_00016442-exon-sc0000237-1575043694:409792..409833Clytia hemisphaericaexon
TCONS_00016442-exon-sc0000237-1575043694:409132..409379TCONS_00016442-exon-sc0000237-1575043694:409132..409379Clytia hemisphaericaexon
TCONS_00016442-exon-sc0000237-1575043694:408702..408785TCONS_00016442-exon-sc0000237-1575043694:408702..408785Clytia hemisphaericaexon
TCONS_00016442-exon-sc0000237-1575043694:405431..408314TCONS_00016442-exon-sc0000237-1575043694:405431..408314Clytia hemisphaericaexon
TCONS_00016442-exon-sc0000237-1510915933:409792..409833TCONS_00016442-exon-sc0000237-1510915933:409792..409833Clytia hemisphaericaexon
TCONS_00016442-exon-sc0000237-1510915933:409132..409379TCONS_00016442-exon-sc0000237-1510915933:409132..409379Clytia hemisphaericaexon
TCONS_00016442-exon-sc0000237-1510915933:408702..408785TCONS_00016442-exon-sc0000237-1510915933:408702..408785Clytia hemisphaericaexon
TCONS_00016442-exon-sc0000237-1510915933:405431..408314TCONS_00016442-exon-sc0000237-1510915933:405431..408314Clytia hemisphaericaexon
TCONS_00016442-exon-sc0000237-1491911889:409792..409833TCONS_00016442-exon-sc0000237-1491911889:409792..409833Clytia hemisphaericaexon
TCONS_00016442-exon-sc0000237-1491911889:409132..409379TCONS_00016442-exon-sc0000237-1491911889:409132..409379Clytia hemisphaericaexon
TCONS_00016442-exon-sc0000237-1491911889:408702..408785TCONS_00016442-exon-sc0000237-1491911889:408702..408785Clytia hemisphaericaexon
TCONS_00016442-exon-sc0000237-1491911889:405431..408314TCONS_00016442-exon-sc0000237-1491911889:405431..408314Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016442-proteinTCONS_00016442-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000237supercontigsc0000237:405431..409833 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.82657	0.0649026	0.444168	0.333483	42.8344	24.9865	10.3919	13.3253	7.82285	5.87216	3.11603	1.09692	2.78485	3.68818	6.00622	1.27091	11.8413	5.43227	1.09175	2.6299	18.2494	5.17238	11.4675	7.09969	4.38242	7.66044	3.88601	0.501798	11.9803	9.93749
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001313Pumilio_RNA-bd_rpt
IPR011989ARM-like
IPR033133PUM-HD
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0003723 RNA binding
Blast
[Close]
BLAST of TCONS_00016442 vs. Swiss-Prot (Human)
Match: PUM1 (Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3)

HSP 1 Score: 324.324 bits (830), Expect = 7.789e-93
Identity = 150/182 (82.42%), Postives = 165/182 (90.66%), Query Frame = 1 
Query:   10 LQFIIDAFKGQVYALSTHPYGCRVIQRILEHCTIDQTSPILAELHEHTERLIQDQYGNYVIQHVLEHGSPDDKSAIVNMVRGNVLLLSQHKFASNVIEKCVTHASRAERSRLIEEVCNYVDGPHGALYSMMKDQYANYVVQKMIDVAEPLQRKVLMMKIRPHVATLRKYTYGKHILAKLETF 555
            LQFIIDAFKGQV+ALSTHPYGCRVIQRILEHC  DQT PIL ELH+HTE+L+QDQYGNYVIQHVLEHG P+DKS IV  +RGNVL+LSQHKFASNV+EKCVTHASR ER+ LI+EVC   DGPH ALY+MMKDQYANYVVQKMIDVAEP QRK++M KIRPH+ATLRKYTYGKHILAKLE +
Sbjct:  986 LQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKY 1167

HSP 2 Score: 93.5893 bits (231), Expect = 4.222e-19
Identity = 50/178 (28.09%), Postives = 96/178 (53.93%), Query Frame = 1 
Query:   19 IIDAFKGQVYALSTHPYGCRVIQRILEHCTIDQTSPILAELHEHTERLIQDQYGNYVIQHVLEHGSPDDKSAIVNMVRGNVLLLSQHKFASNVIEKCVTHASRAERSRLIEEVCNYVDGPHGALYSMMKDQYANYVVQKMIDVAEPLQRKVLMMKIRPHVATLRKYTYGKHILAKLET 552
            + +  +G V +L+   YGCRVIQ+ LE    DQ + ++ EL  H  + ++DQ GN+V+Q  +E   P     I++  +G V  LS H +   VI++ + H    +   ++EE+  + +        +++DQY NYV+Q +++   P  +  ++ +IR +V  L ++ +  +++ K  T
Sbjct:  917 LAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTE-------QLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1087
The following BLAST results are available for this feature:
BLAST of TCONS_00016442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PUM17.789e-9382.42Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=... [more]
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