TCONS_00016442-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00016442-protein
Unique NameTCONS_00016442-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length207

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00016442-protein ID=TCONS_00016442-protein|Name=TCONS_00016442-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
SNQLQFIIDAFKGQVYALSTHPYGCRVIQRILEHCTIDQTSPILAELHEH
TERLIQDQYGNYVIQHVLEHGSPDDKSAIVNMVRGNVLLLSQHKFASNVI
EKCVTHASRAERSRLIEEVCNYVDGPHGALYSMMKDQYANYVVQKMIDVA
EPLQRKVLMMKIRPHVATLRKYTYGKHILAKLETFEKAYMQPTDLLFLPA
TTQIAPF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_009179XLOC_009179Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00016442TCONS_00016442Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001313Pumilio_RNA-bd_rpt
IPR011989ARM-like
IPR033133PUM-HD
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001313Pumilio RNA-binding repeatSMARTSM00025pum_5coord: 46..81
e-value: 2.8E-9
score: 46.8
coord: 10..45
e-value: 3.3E-8
score: 43.3
coord: 125..160
e-value: 7.2E-7
score: 38.8
coord: 82..117
e-value: 4.3E-6
score: 36.3
IPR001313Pumilio RNA-binding repeatPFAMPF00806PUFcoord: 47..79
e-value: 2.4E-8
score: 33.1
coord: 11..44
e-value: 1.9E-9
score: 36.6
coord: 129..154
e-value: 3.3E-7
score: 29.5
coord: 84..115
e-value: 7.5E-6
score: 25.3
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 121..160
score: 9.084
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 82..117
score: 9.247
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 10..45
score: 10.157
IPR001313Pumilio RNA-binding repeatPROSITEPS50302PUMcoord: 46..81
score: 12.117
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..193
e-value: 5.4E-64
score: 215.8
IPR033133Pumilio homology domainPROSITEPS50303PUM_HDcoord: 1..186
score: 68.313
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 2..183

Blast
[Close]
BLAST of TCONS_00016442-protein vs. Swiss-Prot (Human)
Match: PUM1 (Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3)

HSP 1 Score: 323.939 bits (829), Expect = 6.342e-104
Identity = 150/182 (82.42%), Postives = 165/182 (90.66%), Query Frame = 0 
Query:    4 LQFIIDAFKGQVYALSTHPYGCRVIQRILEHCTIDQTSPILAELHEHTERLIQDQYGNYVIQHVLEHGSPDDKSAIVNMVRGNVLLLSQHKFASNVIEKCVTHASRAERSRLIEEVCNYVDGPHGALYSMMKDQYANYVVQKMIDVAEPLQRKVLMMKIRPHVATLRKYTYGKHILAKLETF 185
            LQFIIDAFKGQV+ALSTHPYGCRVIQRILEHC  DQT PIL ELH+HTE+L+QDQYGNYVIQHVLEHG P+DKS IV  +RGNVL+LSQHKFASNV+EKCVTHASR ER+ LI+EVC   DGPH ALY+MMKDQYANYVVQKMIDVAEP QRK++M KIRPH+ATLRKYTYGKHILAKLE +
Sbjct:  986 LQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKIRPHIATLRKYTYGKHILAKLEKY 1167

HSP 2 Score: 94.7449 bits (234), Expect = 1.241e-22
Identity = 50/178 (28.09%), Postives = 96/178 (53.93%), Query Frame = 0 
Query:    7 IIDAFKGQVYALSTHPYGCRVIQRILEHCTIDQTSPILAELHEHTERLIQDQYGNYVIQHVLEHGSPDDKSAIVNMVRGNVLLLSQHKFASNVIEKCVTHASRAERSRLIEEVCNYVDGPHGALYSMMKDQYANYVVQKMIDVAEPLQRKVLMMKIRPHVATLRKYTYGKHILAKLET 184
            + +  +G V +L+   YGCRVIQ+ LE    DQ + ++ EL  H  + ++DQ GN+V+Q  +E   P     I++  +G V  LS H +   VI++ + H    +   ++EE+  + +        +++DQY NYV+Q +++   P  +  ++ +IR +V  L ++ +  +++ K  T
Sbjct:  917 LAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTE-------QLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVT 1087

HSP 3 Score: 76.6406 bits (187), Expect = 2.360e-16
Identity = 47/170 (27.65%), Postives = 84/170 (49.41%), Query Frame = 0 
Query:   13 GQVYALSTHPYGCRVIQRILEHCTIDQTSPILAELHEHTERLIQDQYGNYVIQHVLEHGSPDDKSAIVNMVRGNVLLLSQHKFASNVIEKCVTHASRAERSRLIEEVCNYVDGPHGALYSMMKDQYANYVVQKMIDVAEPLQRKVLMMKIRPHVATLRKYTYGKHILAKL 182
            G +   S   +G R IQ  LE  T  +   +  E+ +   +L+ D +GNYVIQ   E GS + K A+   +RG+VL L+   +   VI+K +      +++ ++ E+        G +   +KDQ  N+VVQK I+  +P   + ++   +  V  L  + YG  ++ ++
Sbjct:  851 GHIMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMVREL-------DGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRI 1013
The following BLAST results are available for this feature:
BLAST of TCONS_00016442-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PUM16.342e-10482.42Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=... [more]
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