TCONS_00016388 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016388
Unique NameTCONS_00016388
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length642

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016388 ID=TCONS_00016388|Name=TCONS_00016388|organism=Clytia hemisphaerica|type=transcript|length=642bp
ATGTTAGGCCTTGTGAAGCAACATGACCAAATGGATAATGTAAATTCGTG
AATATGCCTCTGACATGAAGACATTCACATACCTTGCCAAATCTCTCTCC
TCGTCAGTTTTTCAACCATTCTTGCAAGCTCATCATTAATATCTCCCATC
TCAGCAAATCCAACAAGCTTTCCCGTTGCTCTGTCATAAACCAAATCTCc
cttaattttcatttcatcaaaaattatggAAACGTTTTTTTCATACTCCT
TTAGTTCTTTCAGTTTCGAATCTTCAATTAAGCGTGCTATTATGTCAGGA
TTAAATCCACTTTGTGGTGTCGTAAAGTTTGTGTATTTTCTGATTGTGTT
AACACAAGGAAGcatgaaaaatttgttttgtttgttaatGAGCTGCCTGT
ATGCTGCTGGTGATGAATGGTATATTGAAAGGGCAAACCTTACAATTAAA
GGGTGCCATCTCATTGATCTTGCATCTTTCAAGGATGCATATTTTGCCTG
TTGTTGCCAGAGTAACCACTGAGGTGTTCCTTCCTCAAAACCGGGATCAT
CTTTCTGAAGTACGTCCTTTACCATATCATGATGAGTTTTATCAAGTTGA
ACTCCGTCATGTGTAATCATCTGATTTATTTTATCAGTGAGT
Run BLAST on NCBI

protein sequence of TCONS_00016388-protein

>TCONS_00016388-protein ID=TCONS_00016388-protein|Name=TCONS_00016388-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
LTDKINQMITHDGVQLDKTHHDMVKDVLQKDDPGFEEGTPQWLLWQQQAK
YASLKDARSMRWHPLIVRFALSIYHSSPAAYRQLINKQNKFFMLPCVNTI
RKYTNFTTPQSGFNPDIIARLIEDSKLKELKEYEKNVSIIFDEMKIKGDL
VYDRATGKLVGFAEMGDINDELARMVEKLTRREIWQGM
Run BLAST on NCBI

transcript from alignment at sc0000233:157111..157752

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016388 ID=TCONS_00016388|Name=TCONS_00016388|organism=Clytia hemisphaerica|type=transcript|length=642bp|location=Sequence derived from alignment at sc0000233:157111..157752 (Clytia hemisphaerica)
ACTCACTGATAAAATAAATCAGATGATTACACATGACGGAGTTCAACTTG
ATAAAACTCATCATGATATGGTAAAGGACGTACTTCAGAAAGATGATCCC
GGTTTTGAGGAAGGAACACCTCAGTGGTTACTCTGGCAACAACAGGCAAA
ATATGCATCCTTGAAAGATGCAAGATCAATGAGATGGCACCCTTTAATTG
TAAGGTTTGCCCTTTCAATATACCATTCATCACCAGCAGCATACAGGCAG
CTCattaacaaacaaaacaaatttttcatgCTTCCTTGTGTTAACACAAT
CAGAAAATACACAAACTTTACGACACCACAAAGTGGATTTAATCCTGACA
TAATAGCACGCTTAATTGAAGATTCGAAACTGAAAGAACTAAAGGAGTAT
GAAAAAAACGTTTccataatttttgatgaaatgaaaattaaggGAGATTT
GGTTTATGACAGAGCAACGGGAAAGCTTGTTGGATTTGCTGAGATGGGAG
ATATTAATGATGAGCTTGCAAGAATGGTTGAAAAACTGACGAGGAGAGAG
ATTTGGCAAGGTATGTGAATGTCTTCATGTCAGAGGCATATTCACGAATT
TACATTATCCATTTGGTCATGTTGCTTCACAAGGCCTAACAT

Coding sequence (CDS) from alignment at sc0000233:157111..157752

>TCONS_00016388 ID=TCONS_00016388|Name=TCONS_00016388|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at sc0000233:157111..157752 (Clytia hemisphaerica)
CTCACTGATAAAATAAATCAGATGATTACACATGACGGAGTTCAACTTGA
TAAAACTCATCATGATATGGTAAAGGACGTACTTCAGAAAGATGATCCCG
GTTTTGAGGAAGGAACACCTCAGTGGTTACTCTGGCAACAACAGGCAAAA
TATGCATCCTTGAAAGATGCAAGATCAATGAGATGGCACCCTTTAATTGT
AAGGTTTGCCCTTTCAATATACCATTCATCACCAGCAGCATACAGGCAGC
TCattaacaaacaaaacaaatttttcatgCTTCCTTGTGTTAACACAATC
AGAAAATACACAAACTTTACGACACCACAAAGTGGATTTAATCCTGACAT
AATAGCACGCTTAATTGAAGATTCGAAACTGAAAGAACTAAAGGAGTATG
AAAAAAACGTTTccataatttttgatgaaatgaaaattaaggGAGATTTG
GTTTATGACAGAGCAACGGGAAAGCTTGTTGGATTTGCTGAGATGGGAGA
TATTAATGATGAGCTTGCAAGAATGGTTGAAAAACTGACGAGGAGAGAGA
TTTGGCAAGGTATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009150XLOC_009150Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016388-proteinTCONS_00016388-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016388-exon-sc0000233-1491911889:157111..157752TCONS_00016388-exon-sc0000233-1491911889:157111..157752Clytia hemisphaericaexon
TCONS_00016388-exon-sc0000233-1510915933:157111..157752TCONS_00016388-exon-sc0000233-1510915933:157111..157752Clytia hemisphaericaexon
TCONS_00016388-exon-sc0000233-1575043694:157111..157752TCONS_00016388-exon-sc0000233-1575043694:157111..157752Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000233supercontigsc0000233:157111..157752 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.327739	0.479396	0.371083	0	1.21543	0.436568	1.15874	0.788945	0.276179	0.855232	0	0.491113	0.217969	0.79227	0.930505	0.79886	0.861113	0.378263	0.958083	0.546853	0.158438	0.347763	0.375779	0.256228	0.263909	0.392554	0.224698	0	0.363765	0.277964
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021896Transposase_37
Vocabulary: Molecular Function
TermDefinition
GO:0004803transposase activity
Vocabulary: Biological Process
TermDefinition
GO:0006313transposition, DNA-mediated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006313 transposition, DNA-mediated
molecular_function GO:0004803 transposase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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