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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016164 ID=TCONS_00016164|Name=TCONS_00016164|organism=Clytia hemisphaerica|type=transcript|length=2523bpRun BLAST on NCBI protein sequence of TCONS_00016164-protein >TCONS_00016164-protein ID=TCONS_00016164-protein|Name=TCONS_00016164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=720bp MAASSPYSKRVVALVDMDCFYVQVAQRKEPSLRGQPSAVVQYNLWKGGGIRun BLAST on NCBI transcript from alignment at sc0000226:408877..414087- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016164 ID=TCONS_00016164|Name=TCONS_00016164|organism=Clytia hemisphaerica|type=transcript|length=5211bp|location=Sequence derived from alignment at sc0000226:408877..414087- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000226:408877..414087- >TCONS_00016164 ID=TCONS_00016164|Name=TCONS_00016164|organism=Clytia hemisphaerica|type=CDS|length=19467bp|location=Sequence derived from alignment at sc0000226:408877..414087- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016164 vs. Swiss-Prot (Human)
Match: POLH (DNA polymerase eta OS=Homo sapiens GN=POLH PE=1 SV=1) HSP 1 Score: 411.379 bits (1056), Expect = 1.039e-130 Identity = 247/678 (36.43%), Postives = 376/678 (55.46%), Query Frame = 3
Query: 381 RVVALVDMDCFYVQVAQRKEPSLRGQPSAVVQYNLWKGGGIIAVSYEARKFGVTRQMRGDEAKRKCPDIKLFQVPESRGKADLTMFRDAGAEVIEVLAQFTDCLERASIDEAYMDLTNAINREIQNYSVEEVALSTFKDTHLVGYDNKNISSELTTDQEITDCDLYKTWHDLLQRD---EDSYRMAIGAVIAHRMRKAVQEKTGFSCSAGVGPNKMLAKIVAGFHKPNQQTMVVMDNVPEMFESTKMRKIRSLGGKLGQLLEDKFKVEFMSQLVPLSLQELQAVAGVKNGTVVHGLCRGIDREPVRPRQLAQSVGCSKNFRGKMTLRTRNDVHKWLTNLCEEVHERLEKERLNNDRIPTLFTVACTSEDN--VTQSRRFF-VNKIDLENLRDEAFKALCELNASNNPSRQEWTPAIVNLHITTGKFIPLGGSGSRAINTFMQNSATAVDKHKSPWDTFQTQQPRQSKPNSSLFSTQKTNNSQISNYFSRG---NPTLETS-STLTKPPNTQHSKSPPKPKALNSYFSRKETDESKPLTTQLDRSLEEYPIPGPDLHENSNRVSSKTSDKFNMSTSQFHNMTK---------PSTSKLSTQKDTIP---------RTDHTSTIDKLLGKQQQNLXXXXXXXXXXXEDLMICDRCGKRLLAWDLPDHMDFHFAKDLQDSL 2330
RVVALVDMDCF+VQV QR+ P LR +P AVVQY WKGGGIIAVSYEAR FGVTR M D+AK+ CPD+ L QV ESRGKA+LT +R+A EV+E++++F +ERASIDEAY+DLT+A+ +Q + ++ T++ G ++E T +E W D LQ D ++ +GAVI MR A++ +TGF CSAG+ NK+LAK+ G +KPN+QT+V +VP++F +RKIRSLGGKLG + + +E+M +L + +LQ+ G KNG+ ++ +CRGI+ +PV+PRQL +++GCSKNF GK L TR V WL L +E+ ERL K+R +NDR+ T V+ + + ++ RR + + D + +AF + N S + EW+P + L + KF S S I +F+ + +++ K +TQ S P ++ +T+K S + ++F + E S S+LT P S SP KP + F ++ ++P Q L++ + N++ VSS + ++ + +++ SKL P ++ H S+ K + + Q + + +ED + C++CG + WD+P+HMD+HFA +LQ S
Sbjct: 7 RVVALVDMDCFFVQVEQRQNPHLRNKPCAVVQYKSWKGGGIIAVSYEARAFGVTRSMWADDAKKLCPDLLLAQVRESRGKANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSAVQERLQKLQGQPISADLLPSTYIEGLPQGPTTAEETVQKEGMRKQGLFQWLDSLQIDNLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACGLNKPNRQTLVSHGSVPQLFSQMPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEHDPVKPRQLPKTIGCSKNFPGKTALATREQVQWWLLQLAQELEERLTKDRNDNDRVATQLVVSIRVQGDKRLSSLRRCCALTRYDAHKMSHDAFTVIKNCNTSG--IQTEWSPPLTMLFLCATKFSASAPSSSTDITSFLSSDPSSLPKVPVTSSEAKTQ---GSGP--AVTATKKATTS-LESFFQKAAERQKVKEASLSSLTAPTQAPMSNSPSKP---SLPFQTSQSTGTEPFFKQKSLLLKQKQL-------NNSSVSSPQQNPWSNCKALPNSLPTEYPGCVPVCEGVSKLEESSKATPAEMDLAHNSQSMHASSASKSVLEVTQK--ATPNPSLLAAEDQVPCEKCGSLVPVWDMPEHMDYHFALELQKSF 663 The following BLAST results are available for this feature:
BLAST of TCONS_00016164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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