TCONS_00016018 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016018
Unique NameTCONS_00016018
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016018 ID=TCONS_00016018|Name=TCONS_00016018|organism=Clytia hemisphaerica|type=transcript|length=515bp
GCTCtgtttttgtgaaaatcatATGCAAAtagacagtttttttctttcat
gatGTACCTAATGGGCAAGATTCTGCTATTTACATATAAAGGCTTGGCAG
AATCCTGAGGGCCTTTAAAATGGATAATCCTGAGTGCCTTATTTTGGAGT
TTTTCCAGCTTGTCTAATGAGGCAACCTTGACATGACCAAGAGATTGGAT
AAAGTAGCTGATATGAGATTCAAAAAGGGCATAGTAAACAGATAAAAGAG
TTTTGTAGTCTACATAGTGTCGAAGTTTACTGAGCATACCAACTGCTCTT
GAAAGCTTGAGGGCAGTCTTGGAAATTTGAGAATCCCAGTCAAGATTTTC
ATCAATGATGACACCTAAGTAACTTACCGTTTTTGATAGCTCCAGTTTTT
GGCCACTCAGTCTAAAATTCAGGTTTTTCGTAATTGTCTTGAACTTGGAT
TTGAAAAGAATTATTTCTGTTTTTGATGCATTCAGGCAGATTTTGTTTGC
TCTGAGCCAGTGGAC
Run BLAST on NCBI

protein sequence of TCONS_00016018-protein

>TCONS_00016018-protein ID=TCONS_00016018-protein|Name=TCONS_00016018-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
VHWLRANKICLNASKTEIILFKSKFKTITKNLNFRLSGQKLELSKTVSYL
GVIIDENLDWDSQISKTALKLSRAVGMLSKLRHYVDYKTLLSVYYALFES
HISYFIQSLGHVKVASLDKLEKLQNKALRIIHFKGPQDSAKPLYVNSRIL
PIRYIMKEKNCLFAYDFHKNR
Run BLAST on NCBI

transcript from alignment at sc0000224:25048..25562

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016018 ID=TCONS_00016018|Name=TCONS_00016018|organism=Clytia hemisphaerica|type=transcript|length=515bp|location=Sequence derived from alignment at sc0000224:25048..25562 (Clytia hemisphaerica)
GTCCACTGGCTCAGAGCAAACAAAATCTGCCTGAATGCATCAAAAACAGA
AATAATTCTTTTCAAATCCAAGTTCAAGACAATTACGAAAAACCTGAATT
TTAGACTGAGTGGCCAAAAACTGGAGCTATCAAAAACGGTAAGTTACTTA
GGTGTCATCATTGATGAAAATCTTGACTGGGATTCTCAAATTTCCAAGAC
TGCCCTCAAGCTTTCAAGAGCAGTTGGTATGCTCAGTAAACTTCGACACT
ATGTAGACTACAAAACTCTTTTATCTGTTTACTATGCCCTTTTTGAATCT
CATATCAGCTACTTTATCCAATCTCTTGGTCATGTCAAGGTTGCCTCATT
AGACAAGCTGGAAAAACTCCAAAATAAGGCACTCAGGATTATCCATTTTA
AAGGCCCTCAGGATTCTGCCAAGCCTTTATATGTAAATAGCAGAATCTTG
CCCATTAGGTACatcatgaaagaaaaaaactgtctaTTTGCATatgattt
tcacaaaaacaGAGC

Coding sequence (CDS) from alignment at sc0000224:25048..25562

>TCONS_00016018 ID=TCONS_00016018|Name=TCONS_00016018|organism=Clytia hemisphaerica|type=CDS|length=513bp|location=Sequence derived from alignment at sc0000224:25048..25562 (Clytia hemisphaerica)
GTCCACTGGCTCAGAGCAAACAAAATCTGCCTGAATGCATCAAAAACAGA
AATAATTCTTTTCAAATCCAAGTTCAAGACAATTACGAAAAACCTGAATT
TTAGACTGAGTGGCCAAAAACTGGAGCTATCAAAAACGGTAAGTTACTTA
GGTGTCATCATTGATGAAAATCTTGACTGGGATTCTCAAATTTCCAAGAC
TGCCCTCAAGCTTTCAAGAGCAGTTGGTATGCTCAGTAAACTTCGACACT
ATGTAGACTACAAAACTCTTTTATCTGTTTACTATGCCCTTTTTGAATCT
CATATCAGCTACTTTATCCAATCTCTTGGTCATGTCAAGGTTGCCTCATT
AGACAAGCTGGAAAAACTCCAAAATAAGGCACTCAGGATTATCCATTTTA
AAGGCCCTCAGGATTCTGCCAAGCCTTTATATGTAAATAGCAGAATCTTG
CCCATTAGGTACatcatgaaagaaaaaaactgtctaTTTGCATatgattt
tcacaaaaacaGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008945XLOC_008945Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016018-exon-sc0000224-1491911889:25048..25562TCONS_00016018-exon-sc0000224-1491911889:25048..25562Clytia hemisphaericaexon
TCONS_00016018-exon-sc0000224-1510915933:25048..25562TCONS_00016018-exon-sc0000224-1510915933:25048..25562Clytia hemisphaericaexon
TCONS_00016018-exon-sc0000224-1575043694:25048..25562TCONS_00016018-exon-sc0000224-1575043694:25048..25562Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016018-proteinTCONS_00016018-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000224supercontigsc0000224:25048..25562 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.398618	0.22612	0	0.513723	0.174233	0.123551	0.298119	0	0	0	0.352389	0	0.0771083	0	0.0658348	0.282603	0	0.102335	0	0	0	0	0	0.120857	0	0.222191	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00016018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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