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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000023_pilon:477914..484089+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_041084 ID=XLOC_041084|Name=XLOC_041084|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6176bp|location=Sequence derived from alignment at sc0000023_pilon:477914..484089+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATTGTTTGGTTTACCTAATTTGCTGGCTATTAGTTGGCAGTATATT
TTGTAGTAAGTATATTCAAAACTATTGTAACCTTATTCCTGAAGTCCATC
CGCTTTAAATCTTCTGTACtaaaataatttcatattttgtgtCTGTCACA
CTAAAATGGTAGGCCAGTTGCGATTTCGTATGGTTTGTCAGAGGGTTGAt
ttcccgggggggtactagggttgcgaccTGACGGGGGGttccgcccgact
ttcgaactttggacacttaccgggactaaaaaggagaaaaagaagggaaa
ttttgggaattttacgacccttagcgggacaaatctgaccaattttgacc
aaatttcgatctttcagggggtaaaaagttgaaattttcctatttttccg
accctaagtgggactgaaatttgattttctgatttttccgacccttagcg
ggacgtttggaagtccaaaaaggAACCCTTAAGGGCGacAcataccgtac
cctccaTtttcctAagtacccccccaccccccccggGTTAATTTGAATAG
GAAAGAAGGATTTTGTGCAGCGACAATTTAAACCGTCTAATTTGCACTCA
ATCTCAATTTTACTTCTGATTGCTCAACCAAAGTTTCGATTCTAATAAAC
TATAAAataaaacccatatttactacttgtaagggttgatgcaaaaaggc
ccttttcgccgccggactaATTCGTTTTAAGTGTACAATAAATCAGCTTT
CGAAATCAATGTTCAAAAAGTACTTGTAAACCGAAAATaacttgtttttt
tcaattttcatcttcattatttAAGATTTacgagttttttttatttgaac
atTGTAATGctcggaaatatcttttcaacaatagaaattttgctgactca
gcagaaaagggcaaaaaacgttgaaaaacgcttagtcagcaaaatttcaa
actcaaatatctcatgatctagcctaggaaaccctataaatgacccctct
aatcgatagtactcttcgaggCGCATCTCGCATCTGTTAAAACTGGTATC
TTTcgctgaaaattttctcaaaaatgctgacgtcagcacaaaatattgca
tttttgaagacgtatcgaCCAATTCCGGGTGACTAAGTCCACTAAATGAG
ACAAATGgccccattttggagatctactcttcaagctctatctgatggca
caatcagttttagctaaatgagaacttcaaaaatcgactttctaaggacc
cccaggctaaaatgaccctacccccttcaagcccccataaaaaattttcc
ccagctttgtcagcttggcaaaaactggattcggggtcccaagggaccat
atgatgggaaaataaaataaaaacccatatttactaattgtaagggtgat
cctggatcgccgccggactaaATGGCGTTCGATAAAATCTTCGACAATTA
CTCAAAATCATACTGGCCGTTTTGAAATACTGTTAGGATTctgtttcaat
gtttttgttaaaAGGATATcttaatttataagaacatccaaaattttgaa
tcctTCGGATGAtcttaactttctgagttttaattagcctaaaaatgttc
ttattttccccaatCTTGAGTATTTTTTCCTAAGAATTCGGGTGTTTCCA
AGTCCCCAAAgtcataaaatgttcttaatttgttcttaacattttatcca
tttaagctttatgttcttatatagtttgttcttataaaaagaaaacgtgt
acctCTTGGACCTAAAATGAAGAATGGCAGTAATGATTGACCATAATGAT
GTTTAATTATTATACATCCATGATCCTTATTTACAGAATCGGATAAACAA
GCACGAGACATTCTAAAAGAAATTGACGATTACATTGCTGCTGAAGTGAA
AGGtttttttgaatacaccttttcgtccgtagccgccaattactgcgcgg
gcatttttttgtccattttaacaccctaaactcgatccaatcctttttta
cacctattgtctataggtgcaaaacaaagactgggacggttttaggttgg
taaaacggacaaaaaaatgccaactcggcaattggcggctacggtcgaaa
aggtgtattgcatTCTTAcaattttgatatttattatgAGGAAACCTGTT
ACGctgaattttgaatgttttatttCAATAGTGAATTTTATATTCTGCAT
CTGCAAATACGTTTCACTGCTTAACACAAGAAATTAAGCCTTAGAAACCC
GGTTTTTTACATCAAGTACACATGAAATTTATTCTCAAATGTACCAATGC
TCTTCAATAACCCCGGTGTGAGGTTCTCAACCTCTTAAAGACTAGCAAAC
CTCGCCGTTGTATTTTACTACAAGCTCACTACATTCGCTGAATACAGCCA
AAgactttatctgatattccgatggcggattggcggccacccatgctaaa
gctctaaagaagtGGACcgatttcccatcggagagtgATATTCGGAAGGA
AACGTCGCGAAGCATACTGATGCGTATTCCTTTGGTCCTTAATCATGTTC
AGACGCTACGGTTTctgttacggatcgagagtgttcatattggttttggA
ACTTtcttcggagcaagaaaacgaagCAGTttcgttccgatgaaaatagt
ggagcgaagcCGCTTCGATCTGTTTTACTTTggaacgtcttcttttttga
cctttcgaattttgacgttcacactgtTTCGGAACGATACGGAACAGTAA
CATTTAAACATGGTCTTTAACCTAGCGTTATTCTATCTTAATCTACGTTA
TTGTGCTTGTATATTTATTTAGCCGAAAGCGCTGATATAGCCTCGAAGCC
AAAGAAAGATTTCCACACAGAGAAAGGTAGTTTTGAAATCGTCTACATAG
AGGCCGGTCCAGCTGGTGGCATACATCGTTGTTTTATTTAAACGTTAATT
TAGAAGTTTGCGTTACGTAACGGACGTTAGATATATATTGCTTGAACTTG
TATGGCAGCTGAATCATGCCTTCATTTACCTAGCATATTTTCTCAATGTT
CTGATGAATTTCAATATACACTCATCTTCTCTAAAATACCTCAAGTCTGT
CAGTCAGATTTTAGATGTCATTAGGGTCGAGATTAGGGTAATTTATATGT
AGACGGGTTGGCCCAGCTAGGTAAGGTGGCATGGATTTTCGAACGTTACG
TCACagttttcgaaaaatcaatagacgatatcggcttaacgtgaaatttc
agatttgacctccgagaattccccacaatgctttgtgcagaaaaaaattc
accttgaacttttttccgcgcaaagcattgtgggcaattctcggaggtca
aatctgagttttcacgctaagccgatatcgtctattggctAAAAATAGAG
CAAGTGAGGTTCGAAAATCCATGCCACCTTACCTAGACGGGCCAGCCCGC
CTCCATATGAACAGCCCCTTAGAGTTAAAATCATTAAAtgaaaacggcta
aaaaacttCTATCTTTATCTTAGGCATTGAGCTAACAATCGAAGAACTag
aaaagatgttgacagaggaaactaaaaaggaaacgcaaaagaattttgac
gaagaaaaaagtaaagatgatctaatgaaaaaagaagatgaagaagagaa
aagagattttaacgATGCTATCGAtatcgaaaaagaaattgaagccTTGG
AAAATAAGGAATTCGGTTAGTAGCAAATTGTTTTGGGTCGATAAACATAA
CCTGGTTTATGCTGCTTGTTGTGATAACTTTAGCAAACCTCTATGAACTC
CTAAAAAACTCTGGGTTTTCAAGTTTGATACTCaaaccaaagatttatta
tacactggataaacgactcataaaacgatggagagcgatcattgtatttt
cattgtttcagaaaacaattgatgttcaagctgtgtccgcaaaggacaac
tgtcatggcggctcgaagatgtctgatttaaaaaaatgtttatcagtctt
attctaaaaaagttctctagctctttctttttgtacatttgcaaaaaagg
tttgaaagtaaggctagcataccaagctggatacatttgtgaaatctggt
gtgagaaaatcatcattagacaaaaaattcagacaaaatgcttatagtga
cacgaaattttcaattagaaatatctttccaagactgtccccagaagagc
tgaaattagcaTACattagacttgagtgtcttggctccactgtggtatga
aaatcctttggaggcacgtggtggcaaggcggtttttttgaggttgaagt
ttgaaaatttccggtgtcaacattcaatttcttatacacaacacgtcttt
tgcatctttctcgcagcttgaaacgtcataacgacttataattatcaatt
aagtggaagaatctgactctcacaggaaagtttcaagtctcttttgggaa
ttggatgagtggttttcgataagaaatgcaataaaaatgcttcgaaaaaa
catttaatgagggaaggagagtgaacaataatatcattactgcggacata
gctagttcACGAGAAATCGGAAAAAATCtgttacagtatatggcccccaa
aacggagacggaccccaaaacggaggttttcattaaaatgaagattctga
cttgtagatttatcagaattaaacgatttttgtttattttgaaagaatga
tggttatacgtaaaaatgagcatgtttttgctggtttgagacagattcaa
aataacatatttgcgtctaaaggaaatattttaacaccaaaattagataa
aaattgcatataactcactctagctccttggaaattgaaaataagttatg
aaaacggggtataggaaactttctaaacctaatgccgttcagaaaatgca
aatacatctgtgattttagaggctgggtaaaagatatagcatcttgaagg
tcaaccaatattttggagccctagaatatcagcattgacaaaaccgaaaa
ttctaaatatgagaaaaagaaaaaatcttggaattctattcctatcacct
tgagttAatagtttataacaaaaaataacatatatataaaaattttcgct
gaatcagcaaaaacgcccaaattctgtcattttttttttgcaaaatatag
gaaaaaatatctttaaagcttaatatttcagtttcagttaagattttttt
cctaaaattttcacagcttattccatacatgaatggaactattttcaaaa
gagatttgttttcaaaacttgattaagacgttgttaaatcaaaattgtca
ttttgaaatttttctaaattttcagtttggactttgcaatatcgaaaatc
ttgaaatatttcataaaaatcataaattttaaaaatccgCGGGTCGTAAT
TTAAGGGAAACacaatatgttcatagtttttccccctattaccactgggt
ttaataatttgattttaaacaaACACGACCTCGTTTTAGGGgcccccaaa
cctgcattttgacaaccaggggtatactgtaaaaaaattttatcaaataa
atttatgcccaaaaccctctaaatcatatttcaaaactatggtcaaaatg
ttgtattcatatcttaaagatatctcgagaaatcgctaaaatttcaaacc
tccgttttggggaccattagaaaaaagctacctgtctttaagcgattgaa
aaatattgttgaaattgaaaattttgaaaaagaacttccaggaaataaag
tagagatgttaaagtttttcatgcagcaaaaatttttgtaaaacctcttt
tcctctagatttgagagaaatttcaaatttgatcgccgttttgggggcca
catactgtagacATTAAtgaggtaatatttgctcttcatctttgattttt
tctacagtaattagattgacacatgcgcgataaaatttctattattggtc
ttcagcctctgatactcagggtagttgaatacaccttttctttttcatga
taGAAGAAGCAATGGATAATTATGATTTCTTTCACGATTCTGGAAACATC
ACCAAAGCTGAAGAATCAACTATTGATGCTCTGTGGAAGAAATTTACAAG
TCAAAAGCAAGACGAATTTTTTGATATCGATGGAGaccaaaaagacaaag
aaagtttgaaaagaggtttgaaaatt Coding sequence (CDS) from alignment at sc0000023_pilon:477914..484089+ >XLOC_041084 ID=XLOC_041084|Name=XLOC_041084|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1080bp|location=Sequence derived from alignment at sc0000023_pilon:477914..484089+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATTGTTTGGTTTACCTAATTTGCTGGCTATTAGTTGGCAGTATATT
TTGTAATGAATTGTTTGGTTTACCTAATTTGCTGGCTATTAGTTGGCAGT
ATATTTTGTAAATCGGATAAACAAGCACGAGACATTCTAAAAGAAATTGA
CGATTACATTGCTGCTGAAGTGAAAGAATCGGATAAACAAGCACGAGACA
TTCTAAAAGAAATTGACGATTACATTGCTGCTGAAGTGAAAGCCGAAAGC
GCTGATATAGCCTCGAAGCCAAAGAAAGATTTCCACACAGAGAAAGCCGA
AAGCGCTGATATAGCCTCGAAGCCAAAGAAAGATTTCCACACAGAGAAAG
GCATTGAGCTAACAATCGAAGAACTagaaaagatgttgacagaggaaact
aaaaaggaaacgcaaaagaattttgacgaagaaaaaagtaaagatgatct
aatgaaaaaagaagatgaagaagagaaaagagattttaacgATGCTATCG
AtatcgaaaaagaaattgaagccTTGGAAAATAAGGAATTCGGCATTGAG
CTAACAATCGAAGAACTagaaaagatgttgacagaggaaactaaaaagga
aacgcaaaagaattttgacgaagaaaaaagtaaagatgatctaatgaaaa
aagaagatgaagaagagaaaagagattttaacgATGCTATCGAtatcgaa
aaagaaattgaagccTTGGAAAATAAGGAATTCGAAGAAGCAATGGATAA
TTATGATTTCTTTCACGATTCTGGAAACATCACCAAAGCTGAAGAATCAA
CTATTGATGCTCTGTGGAAGAAATTTACAAGTCAAAAGCAAGACGAATTT
TTTGATATCGATGGAGaccaaaaagacaaagaaagtttgaaaagaggttt
gaaaattAAGAAGCAATGGATAATTATGATTTCTTTCACGATTCTGGAAA
CATCACCAAAGCTGAAGAATCAACTATTGATGCTCTGTGGAAGAAATTTA
CAAGTCAAAAGCAAGACGAATTTTTTGATATCGATGGAGaccaaaaagac
aaagaaagtttgaaaagaggtttgaaaatt
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000023_pilon | genome | sc0000023_pilon:477914..484089 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 370-540:6006 |
| Aaloc | 178-366:3526 |
| Aaloc | 124-174:2825 |
| Aaloc | 58-120:1839 |
| Aaloc | 1-54:1 |
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