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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015324 ID=TCONS_00015324|Name=TCONS_00015324|organism=Clytia hemisphaerica|type=transcript|length=2586bp
tGGCACAGAACCACAATTTCCTTGCGATGATCAAATAGTCGATGTACCTG
GTGATGGGCATTGTTTAATATACGCGTGGGAGCTCTGTCTACATGCCAGC
TCCCAAAATGACATCTCATATATGAGTCTCAAAGATATGCTCGAGAGAGA
ACTCAAATCTAATAAAGAGACATacatgaaatttttgatgaaagcttcaa
aaattgatTATGATATAAATGTATTGAAATACATTTACAAGAAAACCTCC
AACAACGATCTATGTGACATTCTGATATTGGCTCTCAGTAATGCTACCTC
ACTCTCGTGCATGATATGGGAAGAAAGGAACAGACGTTTCACAAGAGCAC
ACACGATATTCCCCATCTCTGGATCTTCCAATGACAGAATACATGTTCTC
AAACGCAACGATCATTATTTGGCCATCGTGGACACAAACAATAAAGACGA
TGATGTTATAATTGTGCGAGAGGTAAAACCGTTGAAGATTGATGATGAAA
TCGAAATCACCAAAGAAGTTCCAGCTaatcctgaaaataaaaatagaatc
gGCAATTCCATCAAAACCGgTTATGGCAAGAAGTTTCAAggtgaaaagaa
aagaacgacCACTGTGCTGCCTGAGCCAAATCCTATAAAGATCGAAGTCG
AAATTCCGAAAGAAGAAGAACTATCTGACTCTGAATTACCTTCATTTCCA
CAACCGTATTCTCCATCGACCTATTTTCcagaggaagaagaagaagaaga
aacagaAAGTCAAGAAGCTATTTCGGAAACAGTCCAGCCtaagtttcaaa
gaaaaattccGCGGATAATTTGGGAAGGAAAGTCAGTAAATGAGGTACCA
AACATTCCTTACGACATTGATGACATAAAGGTTTACCATGTCCAAAGCTC
TGATGGTCTTTTACCGCAAAAATTGAGAGACGGTAGGAATTGGAAGCCTG
ATTCCAGAACAAGTTGGGCTGGCTATAAGTCCGTTCGATATCGTGAATGC
AGAGGTGGATTTACTTGCTCCAATCCTTCATGTCCTTATGTTAAAAAGTT
TGGAAAATCAAATACTGTTTCGTTTGATAAAAATCATTATTGTAAATTCT
GTCAAGCATCTGGGATTTACGAAAGGTGCGAAGCAAGGAAATATATAGCC
TATACACACAATCCTAATGAAGCTTATGTGTACCACTATGGCTTCCATAC
TTGTGTACCAAAAGAAATCCATCAGGCTCCTATCAGCGAAATCGTACGCG
AAGTTCAAAACAACCCATCTGTTCGACCTACTGAAATCCAGACAAATTTG
ATTCTTTCAGCTATCCGGAATAGAGATTCCTGGGATGAAATCATGCGTAC
CGCGGCACAAGTGGCAGATACAAGAAAAATTTCTAACGAGAAATCAAAGC
AGAAGAAGGTTGTTTATCCTTtaggtgaaaatttcaagggTGTATCTGAT
TTGAAAGAATTCACCGACACAAAGGACAAATTTTTGATATACGATATCAA
CCGAAAAAAACAATACATTTTCAAAAGATCAATGGATTCTTTGAAAATTG
CAAAAGATATGTGCGAATTAGACAACGTTTTGGAGAATGAGTATTGGCAA
TCACAAGAGAACTCTGAATTCTATAACCCTAACCGCAAGTACATCTCACC
CACTGCTGAAAAGACAAGTGCCGCTTGCTTCGATGCAGTGTAATCATGAG
GACGGCGAAACAGTTGAGACATTTTGGAGAGTGTGCAATAAAGCCTACAA
AGAGGCAAACAGTTGCACTAACCGTTTCGAGCCCTCTGGATGGGTGACAG
ATATGGCGACAGCGAATTTTAACGGGTTGTCGAAAATGTATGGTGAAGAT
GTGCTTGAAAAAGTAAAGGGTTGTGAATTCCACTACAAACAATCAGTAGA
AAAGAAAGCAAAGACTTTAGGCGAAAAAGGAGACGAATTTCGCGCAAAGT
CTTTAGAGCTATTGGAAGCGGCAACTGAAGAGGCATACACAGCCTTACAT
AGAGAACTTGAATCTTTTATATCAGGTATTGTTTTACTCGCTTTGCTACT
CCTTCAAACGAAGaaactttcgaaaatttgacaaaacacGAAAGTTTCtt
tccgcgaaagtttcttcgataaagggctctgaccatagtgaaaaatcgtt
tttggaatttgaagataaaaccttttgTTTTCACCTACttaacattttaa
aaaaagactcagtttgaaaaatcttgtttAAATATCATAGTAGTGTTAgt
taaattttttctgaaaatctttcTCATTCAATGTGTAAAAAAGTAATGAT
TGGTTTtatcagagatttgggaaaggAAGATAGGTATCGGCGTATTCATG
TATAGAAATATGTACTGTTATAGTCTTTTGTTTCTTTTGAAATCATTCAA
ATATAACTACTATAACAACCTTTTCTGCCAATCAGAGTAAGGAATTATAA
AACCTCTTTGCCAAATCTTTTGAGCCCGTGCCGAGAAAAACTGACTCTAC
CAACAGAATCCTGGTAATATTCGAATATTTTCTACCTGGAAAAATTTACA
TTTGACTTCCAAAAATTCTTGCTGCTAAGATATTCG Run BLAST on NCBI transcript from alignment at sc0000210:223535..231087+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00015324 ID=TCONS_00015324|Name=TCONS_00015324|organism=Clytia hemisphaerica|type=transcript|length=7553bp|location=Sequence derived from alignment at sc0000210:223535..231087+ (Clytia hemisphaerica)
tGGCACAGAACCACAATTTCCTTGCGATGATCAAATAGTCGATGTACCTG
GTGATGGGCATTGTTTAATATACGCGTGGGAGCTCTGTCTACATGCCAGC
TCCCAAAATGACATCTCATATATGAGTCTCAAAGATATGCTCGAGAGAGA
ACTCAAATCTAATAAAGAGACATacatgaaatttttgatgaaagcttcaa
aaattgatTATGATATAAATGTATTGAAATACATTTACAAGAAAACCTCC
AACAACGATCTATGTGACATTCTGATATTGGCTCTCAGTAATGCTACCTC
ACTCTCGTGCATGATATGGGAAGAAAGGAACAGACGTTTCACAAGAGCAC
ACACGATATTCCCCATCTCTGGATCTTCCAATGACAGAATACATGTTCTC
AAACGCAACGATCATTATTTGGCCATCGTGGACACAAACAATAAAGGTGA
AACTCGTTTTAGCTTTTAAACAACTTTAGACACTTTTGTTTTGAATCGAA
TTTTTAGAACAAAAATTTAGATTATGTAATAAGACAAGCCATTGATCCAG
CAataaattttaaggtttttagaAGAAAACTACGTAGAGGCGTAAAAATA
TTATAACTTGATTAAATTAGTGTATCGGTGCAGTATAGCTGGTAGTAAAA
TGATTCTTCCCTATACGAATAGATTTTGCTAAATCAACTTTTATGTTATA
CATTTCAGTGTCGTAGGAAGCCTTTTGATTTTcttggggggagggggtga
aaGTTAGTGACACCTCAAAGGCCAACTGTTGTTCAGAACGAAGAGCGAGG
AAATTCTGAATATTCACGGTCCTAGAATGCCAGAAATCttactcaaaaaa
tgaaaaagatgaaaaattcaaaGGAATATTACTCCAATTCTCACAGTAAA
ACAtctccaaaaaaattatttNTTTGTTTGGTCACGTGATCTCGTATTCT
TTTTGTAATTGGTCTTTGAAACTTGAACGCCACGTGGGTCTCTATCGGAA
AATATTAGTGAGAAAGTGGGGCACCCCGCGGTGCAGCGTGGTATTTCAAA
TGGAAAAGTGctaactagaactagaactttATAAAGACATTTCTTATAAT
TTTAGTAATAATGACAatggttttcaactttttaaattgtCTTTCACGAA
TGTTTTACAGAGTCTCTTGATAATCGACAGTCTTTAATCGTGAAGGATAT
TTGCAGCAGAAAAATCATTGGATAAGAAGAAATCCAAATTTACGGGTTTG
CAATTAAAGAAGTTAAACTTCACATCAACTTTTAATGTTAGGGTACAGAG
ATAGAGCAAGGTATTTTTCAATGTGCTTTATCCAGCTTCGCTATTACATA
TCCCTGCCTCgatcaacaaattttttttgaatgtttttttcatttaggAT
GAAAGCTTTTCGAGGCAAAATTCGAAGTGTTTAAAATATGTTTTGCGAGA
ATTTTATGAATTCAAGCTAATTTATGTATCTGATTTCTTAATAGAAGACG
ATGATGTTATAATTGTGCGAGAGGTAAAACCGTTGAAGATTGATGATGAA
ATCGAAATCACCAAAGAAGTTCCAGCTaatcctgaaaataaaaatagaat
cgGCAATTCCATCAAAACCGGTAAATTCTATACTATACATTTTATATAGA
ATTGTTTTTATTCATACTTTAAATTTAAATATTCCTTGAGCTTTTTTGGG
CCCCTTCAGGCCCACGTGTTTTAGGCAGGGCAGTGTGGTGTGTAGTGATG
TGGCTTTAAGTCAATCTTTTTCTAATTCTAATAGCTAGAGGACATAATCT
AGTGTAGCTGAACCaaggtttttttatattttcgttcactcaatgtcaaa
aaagtgaattttgggcattttttttGATACtgtaaaagaaattatttcaa
aatcttttgtgtTACAACTTAATGGGCGTTTTATTTCAGTCAACTCAGGG
GGCTACGCCCTCCTGTATGGTCCTTGTCAGATATAatcgacattggcact
taaagtgTTAAAAGAAAGTTAAGTGTAAACTTCCTTAACCTGAGTATCAG
AGGACAAGTTTTCTGTGAAAATATTGACCTCTGACGACAAATGCTATGAT
TTTCATCGCGCATGCCCGAACCATTTGCAAAATCTAATTGTTATCATGTC
AAAGAACTACCTAAGAATTATGGGATGGAGAGAAttcatacacccctgtc
tcagtgacctggTGGGAATTTTTTTGCTAGTGGGGATAAATAAAGAGACA
TAAAATCCAATGGGGTTAtcaaaaacgggtttttttccactggggatacg
aaattctattgttctttatTCGAAATATTGGTGGGGATGAGACATTTAAG
TCGATCagaatttagtttttttacgATTTTCAATAGGGATGGGCCTTTTT
CTAGTGGGGACGAATTTCTATGCTATTTTTCCGCCGGTGATGACTTTTTG
GGCCTGTATTTCCAGTGGGTAGGGGGTCCCACCGGttctgtgaaacaggg
gtgtattcaTTGCCTTTACTTGCTACAGTCTTATTTAGCAAATAATAAAC
CTTGTGCTCAGAACTAAAAGAATTACACCATTAGAAAGCTTNAATATTCC
TTGAGCTTTTTTGGGCCCCTTCAGGCCCACGTGTTTTAGGCAGGGCAGTG
TGGTGTGTAGTGATGTGGCTTTAAGTCAATCTTTTTCTAATTCTAATAGC
TAGAGGACATAATCTAGTGTAGCTGAACCaaggtttttttatattttcgt
tcactcaatgtcaaaaaagtgaattttgggcattttttttGATACtgtaa
aagaaattatttcaaaatcttttgtgtTACAACTTAATGGGCGTTTTATT
TCAGTCAACTCAGGGGGCTACGCCCTCCTGTATGGTCCTTGTCAGATATA
atcgacattggcacttaaagtgTTAAAAGAAAGTTAAGTGTAAACTTCCT
TAACCTGAGTATCAGAGGACAAGTTTTCTGTGAAAATATTGACCTCTGAC
GACAAATGCTATGATTTTCATCGCGCATGCCCGAACCATTTGCAAAATCT
AATTGTTATCATGTCAAAGAACTACCTAAGAATTATGGGATGGAGAGAAt
tcatacacccctgtctcagtgacctggTGGGAATTTTTTTGCTAGTGGGG
ATAAATAAAGAGACATAAAATCCAATGGGGTTAtcaaaaacgggtttttt
tccactggggatacgaaattctattgttctttatTCGAAATATTGGTGGG
GATGAGACATTTAAGTCGATCagaatttagtttttttacgattttcaatg
gggatgggCCTTTTTCTAGTGGGGACGAATTTCTATGCTATTTTTCCGCC
GGTGATGACTTTTTGGGCCTGTATTTCCAGTGGGTAGGGGGTCCCACCGG
ttctgtgaaacaggggtgtattcaTTGCCTTTACTTGCTACAGTCTTATT
TAGCAAATAATAAACCTTGTGCTCAGAACTAAAAGAATTACACCATTAGA
AAgctcttgattttctaaaaattatgaTATAAAAATCGCATCTTGAACAA
AACAAAAGACTTGACATTATTTTCTTAAAGCTTTCGGTCGTGTTCAGatc
tgaaagtttaagtttaaggtttaagtagtactttgttgatatgggaattc
aattataatcacttttcttttgtcatcatcgattggcgatctcgaggaat
ctcctttcctaacttgaaCGTTATATGTATGAAATAAAGACCTTTCTTAA
TTCCCTTGGGAATATGTTTTTTCATACCAAGAGCCTTTAACCTGATTGGC
CTTATGGGAGTATATGTGCAAGAAAAACATATATGCCATTCTCAAACTAa
gaaactaaagtctgtccagatataattggcagtggaaacaagaatgcctg
taacttttgatagtcaaatataattatagaaattttttttgcttgtttta
gagaatcaaaagcgctatatttgattgtattcttggtttaaaaatttcaa
gatttttagcggttaaatttgcgattgcaaaaattgagctttttatctac
ttatgctataactttcatttttacatcaATGGCAGTTCAACCTTagatta
agaagtttgttaaatttcaaggcaaacagaaaagtccttcggaagatatg
ggacccgaaataccccttggtagcacttttctgtgaaatatcaaatctcc
aacttattgctaaaaaacgggggtagtgatatcattgatataacagtttt
tggatcataacacattttatgatctttttaatgacctcatagccaaactg
tgtttagtgttttgggaattagcaaacttctttaatgactttaaaataac
aaaggcaatataagttcatgcttatcttttcaataaaaacaattatactg
tgatttcacttcgtttcgaaataatcaatgataccaataataccaaNNca
aatttaacaaacttcttaatctaaggttgaactaccactggtgtaaaaat
gaaaattatagcataagtaggaaaaaagctcaatttttgcaatcgcaaat
ttaaccgctaaagatcgcgaatttttcaaccaaaaatacattcaaatata
gcactattgattctctaaaacaagcaaaaacaatttccatgattatattt
gactatcaaaagttacaggcattcttgtttccactgccaattatatctgg
acagactttagataCTACTATCTCTATTTTCTCGCGTATTTTGTTATAAC
GTATTTTTCGTCCCTTAAGGGTGTATTGGCTTATATCTCTTTATAGAAAT
TACTTTTAGCTGGCTCAAGTTTACTTCCATTTtaacaagaagaaaaatca
gCAAATCCTGGGTCGAACTGGGtttttttaaactgtttttttttaagagc
gAAGCGATGTCGCGCCAGCGGCATGCGACGCTGGCTTGCCAGCTAGTACa
taataattttcttatttaggTTATGGCAAGAAGTTTCAAggtgaaaagaa
aagaacgacCACTGTGCTGCCTGAGCCAAGCAAGTTTTTCATAttacatt
ttcatattttgaccaTTAGTAAACCTAGAATTACTTCGGGAAATGAGGAT
TCAGAGTGACTCTTAAGAGACTTTTATGGACTTTTAAGGCgaacccaaaa
aattttttgtttccggtccaccgggtgacgaaaaaagaCACTCTCTCGGC
CGgccgcgaaaaatttttttgtgctaaatttcgatcccaaaactcgattt
tttaaagcactcgtaGAAGTTAAAAGGATGGTATTTTTTTGCCTTAAATC
TGCAGTAATTTGACACCAAAATGCAAATTTTGTAAGAAAAACTTTGAGTA
CGATGTCAAAATAATATTCTAATAATTGCCTGAAAGAGGGCCGGAAATTT
CTGGGTTTTGATACTTTTAAGATCGGCCTGTAAAACTCCTATtgtttttg
acttgaaattttgagctattgTATTATAGGTATAATTTAAATTTACCAAA
TGTTCAACTTTTActggtaaattttcaaacagcTCGAAGTCCATCGTGgg
ataaatttgtctttgtaatCAATCATTACCTCTAATCTCTCCATAGATCC
TATAAAGATCGAAGTCGAAATTCCGAAAGAAGAAGAACTATCTGACTCTG
AATTACCTTCATTTCCACAACCGTATTCTCCATCGACCTATTTTCcagag
gaagaagaagaagaagaaacagaAAGTCAAGAAGCTATTTCGGAAACAGT
CCAGCCtaagtttcaaagaaaaattccGCGGATAATTTGGGAAGGAAAGT
CAGTAAATGAGGTACCAAACATTCCTTACGACATTGATGACATAAAGGTT
TACCATGTCCAAAGCTCTGATGGTCTTTTACCGCAAAAATTGAGAGACGG
TAGGAATTGGAAGCCTGATTCCAGAACAAGTTGGGCTGGCTATAAGTCCG
TTCGATATCGTGAATGCAGAGGTGGATTTACTTGCTCCAATCCTTCATGT
CCTTATGTTAAAAAGTTTGGAAAATCAAATACTGTTTCGTTTGATAAAAA
TCATTATTGTAAATTCTGTCAAGCATCTGGGATTTACGAAAGGTGCGAAG
CAAGGAAATATATAGCCTATACACACAATCCTAATGAAGCTTATGTGTAC
CACTATGGCTTCCATACTTGTGTACCAAAAGAAATCCATCAGGCTCCTAT
CAGCGAAATCGTACGCGAAGTTCAAAACAACCCATCTGTTCGACCTACTG
AAATCCAGACAAATTTGATTCTTTCAGCTATCCGGAATAGAGATTCCTGG
GATGAAATCATGCGTACCGCGGCACAAGTGGCAGATACAAGAAAAATTTC
TAACGAGAAATCAAAGCAGAAGAAGGTTGTTTATCCTTtaggtgaaaatt
tcaagggTGTATCTGATTTGAAAGAATTCACCGACACAAAGGACAAATTT
TTGATATACGATATCAACCGAAAAAAACAATACATTTTCAAAAGATCAAT
GGATTCTTTGAAAATTGCAAAAGATATGTGCGAATTAGACAACGTTTTGG
AGAATGAGTATTGGCAATCACAAGAGAACTCTGAATTCTATAACCCTAAC
CGCAAGTACATCTCACCCACTGCTGAAAAGACAAGTGCCGCTTGCTTCGA
TGCAGTGTAATCATGAGGACGGCGAAACAGTTGAGACATTTTGGAGAGTG
TGCAATAAAGCCTACAAAGAGGCAAACAGTTGCACTAACCGTTTCGAGCC
CTCTGGATGGGTGACAGATATGGCGACAGCGAATTTTAACGGGTTGTCGA
AAATGTATGGTGAAGATGTGCTTGAAAAAGTAAAGGGTTGTGAATTCCAC
TACAAACAATCAGTAGAAAAGAAAGCAAAGACTTTAGGCGAAAAAGGAGA
CGAATTTCGCGCAAAGTCTTTAGAGCTATTGGAAGCGGCAACTGAAGAGG
CATACACAGCCTTACATAGAGAACTTGAATCTTTTATATCAGGTATTGTT
TTACTCGCTTTGCTACTCCTTCAAACGAAGaaactttcgaaaatttgaca
aaacacGAAAGTTTCtttccgcgaaagtttcttcgataaagggctctgac
catagtgaaaaatcgtttttggaatttgaagataaaaccttttgTTTTCA
CCTACttaacattttaaaaaaagactcagtttgaaaaatcttgtttAAAT
ATCATAGTAGTGTTAgttaaattttttctgaaaatctttcTCATTCAATG
TGTAAAAAAGTAATGATTGGTTTtatcagagatttgggaaaggAAGATAG
GTATCGGCGTATTCATGTATAGAAATATGTACTGTTATAGTCTTTTGTTT
CTTTTGAAATCATTCAAATATAACTACTATAACAACCTTTTCTGCCAATC
AGAGTAAGGAATTATAAAACCTCTTTGCCAAATCTTTTGAGCCCGTGCCG
AGAAAAACTGACTCTACCAACAGAATCCTGGTAATATTCGAATATTTTCT
ACCTGGAAAAATTTACATTTGACTTCCAAAAATTCTTGCTGCTAAGATAT
TCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00015324-exon-sc0000210-1491911889:223535..223980 | TCONS_00015324-exon-sc0000210-1491911889:223535..223980 | Clytia hemisphaerica | exon |
| TCONS_00015324-exon-sc0000210-1510915933:223535..223980 | TCONS_00015324-exon-sc0000210-1510915933:223535..223980 | Clytia hemisphaerica | exon |
| TCONS_00015324-exon-sc0000210-1575043694:223535..223980 | TCONS_00015324-exon-sc0000210-1575043694:223535..223980 | Clytia hemisphaerica | exon |
| TCONS_00015324-exon-sc0000210-1491911889:225032..225154 | TCONS_00015324-exon-sc0000210-1491911889:225032..225154 | Clytia hemisphaerica | exon |
| TCONS_00015324-exon-sc0000210-1510915933:225032..225154 | TCONS_00015324-exon-sc0000210-1510915933:225032..225154 | Clytia hemisphaerica | exon |
| TCONS_00015324-exon-sc0000210-1575043694:225032..225154 | TCONS_00015324-exon-sc0000210-1575043694:225032..225154 | Clytia hemisphaerica | exon |
| TCONS_00015324-exon-sc0000210-1491911889:228504..228563 | TCONS_00015324-exon-sc0000210-1491911889:228504..228563 | Clytia hemisphaerica | exon |
| TCONS_00015324-exon-sc0000210-1510915933:228504..228563 | TCONS_00015324-exon-sc0000210-1510915933:228504..228563 | Clytia hemisphaerica | exon |
| TCONS_00015324-exon-sc0000210-1575043694:228504..228563 | TCONS_00015324-exon-sc0000210-1575043694:228504..228563 | Clytia hemisphaerica | exon |
| TCONS_00015324-exon-sc0000210-1491911889:229131..231087 | TCONS_00015324-exon-sc0000210-1491911889:229131..231087 | Clytia hemisphaerica | exon |
| TCONS_00015324-exon-sc0000210-1510915933:229131..231087 | TCONS_00015324-exon-sc0000210-1510915933:229131..231087 | Clytia hemisphaerica | exon |
| TCONS_00015324-exon-sc0000210-1575043694:229131..231087 | TCONS_00015324-exon-sc0000210-1575043694:229131..231087 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000210 | supercontig | sc0000210:223535..231087 + |
Blast
The following BLAST results are available for this feature:
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