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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000143_pilon:604328..610602+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038211 ID=XLOC_038211|Name=XLOC_038211|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6275bp|location=Sequence derived from alignment at sc0000143_pilon:604328..610602+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATGCATGGCGAATAtcaaatgaattattttttaatcattattttatg
ttttctgTCAGGTATGgataaaactttaattttgaaaccCTGCCTGTGTT
CTGTGGACCCAGAGGGTACCCATcacagtaaaaaaattgagtaaaaccaC
CTGGGGGGAAGTACATTTCACACCTTGCAAAGTGAATGCTTTTCCCACCC
GGGTTAACTTATTGCACGTTCCAAGGTGTGAAATACATTTTTCTACCATG
GtgatttactcaatttttcttgtGCATTATGGGAAAAAGTTCAATTGTGA
GACAGCAATACATCCtcttctcatagacccactggaaacccttcccactg
gaaaaattggctaaaatatcgTCCTCGGTgtaaaattatactccaatttt
tatccccactgaaaataatcgaataaacCAACCCTCACTACAAAGATATC
ATGCTATtgttcccatccccactgaattttctgacttgaaagcaatagaa
tttaaatccccagccataaaaaacacgGGAATATAAGTCCACGTCGAGTT
TCATTTCAGTCCGTTATTCTTatccccactgactgaaaaaaatcctaccg
gatctgtgagaaggggatgtagaAATGTATTTTGAGAGAATTATTCTTTT
TCATGACGTCAGAAATGAGTGAAAACAGAACACTAGGGCAGGGTTTAACT
CTCTAAAGGTTTTATGTATAGCAATACATTTGAGCGAGTTTGACCATGAC
ATCTGTTTCCCCTTGAAATGATTAAAATggtattggttgaaaaattacaC
GACATTCCGTGACGAAGAATGTCATCTCTACTCCTTGTCTCATATTTGAT
AAACCCAAGAACCTTAACATATTTTCCTCGAATCTGTATACAACATTTGT
ATGTAATAAAAAGTAACCTGATGTTTTATGTCAGCTGAATTTCGGCGGAg
gatctttgaaaatttaatctttcgatctctttaacttgaacctctatTAC
TCATTAACTCAAGCAAATTTGTACACCcctgcgtgttcgagttatggaga
ctctagtGTGGTTAGAAGCACGAGACTGCCAACAACTGATTCATTTGCTT
TTCAGGATCGCTGTGCCAGACTACAAAATCACCAAGAACTTCACTGCCTA
CACCGCCATCTCCACCATCTACACCACCTCCGCTGCCAAGCACCACAAGA
CTTGAAGATGTCTTACCCTTAGAAATACCAATTGCCATAATTAACATTAC
GTTTCCAACAATTCAAAATCATAACCCTCTCAGTACTAAGCAACCAAGCC
AAAATGGTACCTCATTCGGTCAGGATAAAGCTTTACCGTCACTATCTGGG
GAAGCTGTTAATTCCCAAGCAAGAAATAATGGATCAGTGCAGAATCAGAA
TCAAGCATCAGAGCAAAATAATCCAATTTTGAACAGAAATGAGGCTAATA
ATGCAAATGGACAACCTCAAAAACCAGGAGCAAGCTTGAAAAATGGCTTT
GGTGaacaaaattcaaatataaATGGTCAGATTCAACCAGTTAGAGTTAA
CAACAACTTTGCAACTAACAACTCCAAACCTGCTTCAAACAATCTAGCAC
AAAGCTCTAATCAGAATTATTTTCAAGGTgtacaaaattcaaaaaccaAA
TCACAATCTCAGAATGTCAAAACTTTTTCAGAACAGAACACACCATTgtc
aaactttatgaaaacaCCGACAGATCCAAATATTGTACTACCAAAAGGCA
ATTcattaataaaacaaaaacttcCTCAACTAAAACAAAACAGAACATCT
TCTAGATTGACCAATCAGGAGACCTCACAAAAAGGACTTCTGCCAAACAA
AAGTAAACCACTGGGTTCACAACAAAACCAAGAAGCTGCATTAATAGAAA
ATCAAACACAACTACAAGATACAACAGGTGTTTTAAATCACCCTGTGAAG
AAGACTCCCATATCACCAATAGCAGGATCCATCAACGACCAAAGTACAGC
AAACCAAGTAACACCTACTACCCAAATCCAAacaaaatcaaaccaatctT
CACCAATTCAATCGCTTTTACCACAAACTTCAATCTCGCCACAAAACCTA
GACCAATCTAAAACACCAACTTTTGCACAAAATCAACCAACTGCCACTAG
AAATGAAACTAGTAAATTCTCCAAACAACAACCTCTAACATCTTCAAATG
AACAACTCCCGGCATTCCCAGAACAAAATCAGAAATACTCCACAAGGAAT
AAAACTTCGACTGTCTCAGTGACCAgcagaaacaaaaataataaccaGCC
TCCAGCAATTGCTTTCTCAAGCTCTTCAAATCAACCAGATCTCCAAACTA
AAGGTTGGTAATTTTGTTCGTTTCTAATCCTGTCACAGTTGATACACCAA
CatcgtttcaacgtttatctaacgttgtACGGACGTTGTGAGCATTAgac
aaacgttgaaacaatgttatCAGCCAACTGTGCTAATCCGATCATCCATT
CTGCCTATACCACGCTCTACTCTAAAAGGGATGTGGCAAATGTGACAATC
AGCCAAATCATTCAAAACCACGTTGCCTTttacttgaaaacgaaagcgaa
aatGACTGGGTCCTAATGTTTATGTATTTGATTGACAATTGCTTTTAGTG
TCATTGTTTTACTTTATCCAATCAGCGTGTTCAAAAGCTTATTGAACATT
CTTCCCACATCTGGAAGAAAAAGGTTAAAGCGGTGCGTAATCATCTCTCA
CGGAGCAATGGAGTAATACTTGCCATGCGCAGAGTATCAGAGTCTGCCCA
GAAATCAGATCAACATTGaacaacgttgtttgccagatggaggattttcg
aaaactctGTCTCAGTGACTTGCGATTTACCTATTAGGCTAAAAAGTCCT
GAGGTTCTCTTGTACTTTAGCACTCCCCCCTTTTAGTAAATCTCTGGTTA
AAGGGATTTCAATTAATACTACTTAAAAGTTCAATAGATtgaattaaggg
ctctgaccatagtcaaaatcAGTATTTCAGTTTAATGTCGATATTTTGGC
TGAAGGTTCCTTTTAGGAACTAGCAAAAAACTGCGTTTACAGAATTGTGA
AATATTAGTTCCTTCGTCAGATATTTAGTATCAAACTTTGTGTATCTAAA
ACCtcatcttttaaaatcaaaactctcTATAAAGTATGCATCAAGCTAAT
TACGGCAGAATAATTACAAGTCAAGCCAAGACAAGACGCAAAATGTTCAT
CGCTTACACATTGTATTTCAAAGTTAAACAGTGTTCACCATTAATAAAAG
TAAATTCCCATAATAGCAATGAATCATTTATTACTTTCATGATCATAAAA
TTAATCAATTTATGCAATGATGTCATTAAGAATAATTATagtttaaatct
aaaattattaaaaCCTTTTGCACAATTGAAGAATCATGTCgtttattttt
aaatagctaagtttgaatgggtaattaacctttttgtttcaaaatttctt
tacactgtccgcaaagaattgaactattttaaattttgcggaaaattttt
ctaaaaagatgatGTGtcaaagttatgactgtttatttaagcaaaatcca
gatgaaaaattgatgaaaaaccactattttgaagatttcgagacaaagaa
gcatttacaaaaattttccgcaacaatttttattgttcggtaaaagatac
accatctactgcgaaaattttttcaaaatgttttttcttcgccgaaacta
agctcttcaaagttgaaataagcttcctcgcaaaagtcttcattttcttc
ttcgtcaatttttttcaatgcaatttttgaattttcaaatttaggaatag
tttgtctaacagaaaatgtataacatgccatagttttgttggttacatca
gtcagaaaacacattttaaacacggcaattatgaaaaattcactatggtc
agagcccttaaataatATCCTAGGGGGTTCGAAATCTCGACATATTTCAT
CACGATTTTTAAATGGCGCGGGTCGAGCaaaattcgggcaaactggggag
gcaattttagaaaattttgattttgccaCTCGTATTAAaagtaaatatat
ttttaaaaatcacgcGCATGAatatttttgggtattttttctCGTTTTGG
CCCAAAACTGTCaattctaaggtgtaaaaaagcaaaggggcgccgaaatt
aaTAATCAAAGGCGCTTTTCTGCCACTGTTGTCTTTTGGCAcgccccctg
ccaccacgctagtGGATCTCGCTAACCTTAAAACACATAACAAcaataat
tcttttttcaaaatctaaggTGAGATAGAGTGTTACAATGCAAGTGACGG
AACCATCAAATGTAGAAATAAGATGCCACAACCTCACGTTTCTACGTCTC
AGTTCAAAGGTAAGAACTCTGGCGTTACCTATCTTTAAAATTCTTCGTTC
GTCATCCCGGggagggtactagggttggaaaatgtcgggtatgtgcggac
TGGATAAAGAAGGcgaaaaagtgaattttagagAGCATTTTCAAGTTCAA
TTTTGTCCTAACCTTAGAGATATCCTTTACTTTtccaactttttcaaaag
aatcaaCCCTTACCATCCAAACATACCCAGCACATATTTTTGTCTAAGTA
CCCCGAGTTCTTCAGGTTTCTTAGAAAGCATGAAGCATATTAAAGCCCAT
ATTGCAGTTGTAGAAAGATAAACTTGATATACATTTATTGATAAGGCTAT
CACTATGCCTCACTATCATTCTGCTGATTGGTGGAGTGTGAAACTTTCAT
TCAAAGACTTGCACCCCAATGGACTGCGCTCGAATCCCAAACACCTCCAG
GCAGTGCGTTAGGCAACATGGCAATAGACTCTCTACTTTCACGGATATAT
CACTATCTCTCAAAACTAGCCGATTACATCAAATTCGAAATTGAAAATGT
GTAACGATAAACTCGGTTAACAAGCATGAAGATATCTTTAGAATATCTAA
CGGATTTAAAACTTGAAATCTTTATATTTCTTTGTATAGCTTATACAATT
TATGTACAcgcctgtctcacagccccgtgAAATTTCCCATAGCAGGAATA
AGAATTTCCATCAAAATCCACATGGTGATGAAATTCTTTTGTGCTCatgt
caaaaaataattttagagtGCGATTTTTGCAACAAAGTCGATTTTCCTtc
ggggctgaaattgtaggctTTTTTCAACGAGATACGAGCTTTtagctaaa
ttttccagtggggtggCGTCCCCACCAGGGTTTTTTAAAAGACGTGTACA
TAGAAGAAGGAATTGCGAGacaaaattataacatttttaggAGACATCGG
GATCAAAGCATCAGGACTTAACGGCACAAAGGTTCTCGGAGGTGAGAGCA
CcaataaaatgaatgaaacaaTGAACTTCAAAGCTGGAAGAAGCAACTAT
GATTACCAAAATTTGACGTCTCTCCATAACTGTAGCGGATGCTTGGAAAA
TAAGGTTAGTTCTTGTTTTTACACCCGAGGGCGCGGGGCGGATAGAGGTA
CCTTCTAAGATTATCAAAATTTGACGTCTTTCCATAACCGTAGTGGTTGC
TTTGAGAATAAGGTTAGTTGTTGTTTTTACACCCGAGGGTgggggggAAG
ACGCTTAATTGGGGTACCTCCGTTAGCACCACAGTTTAGCTTTCCCTCAA
ATTCAACCTGTGGAGACGTACTATGAGAGTTTTATCACGTACGTCTTTTA
GTAACATTTCATTAAACCATATTTTAAGAGGAACGTCTGTAACGTCCTTT
ATCGAGTAGAAAATAGCATGTAACAGACGCACAAATCCTATAAAATAGGC
TAATAATAGTTCATTTATTGTCAATATTCTAGGAATTGATCCACATCAAC
ACATCAAGCCCACTCAAACCCAACAAAACGAAATCACAATTCAACACTGA
AACGCAAGCACCACAGACGCAAAGTCCGAAACAAGGCCAGAAGTACCCTC
ACAACAATCTCTCTTCACACAATATaacaaaagctagcacaaaatttgct
caaaactatgaaaatcgaaccaaaacaaatcaaaaagttCCACTCGAAAG
CGAATTATCCGAAATCTCAAAACTCCGAAACAAACTTCTATCTTCATCAA
CTAACAGAACAAATTTCTTAACAAAGAATATAAGCAGACCAACATTGAGC
AATCAAACAACAAACGCACCCATATTGAATCCAAAAACATCACATTTGAA
TCTAAACACATCAACGCGTGGACGG Coding sequence (CDS) from alignment at sc0000143_pilon:604328..610602+ >XLOC_038211 ID=XLOC_038211|Name=XLOC_038211|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3912bp|location=Sequence derived from alignment at sc0000143_pilon:604328..610602+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATGCATGGCGAATAtcaaatgaattattttttaatcattattttatg
ttttctgTCAGATGATGCATGGCGAATAtcaaatgaattattttttaatc
attattttatgttttctgTCAGGATCGCTGTGCCAGACTACAAAATCACC
AAGAACTTCACTGCCTACACCGCCATCTCCACCATCTACACCACCTCCGC
TGCCAAGCACCACAAGACTTGAAGATGTCTTACCCTTAGAAATACCAATT
GCCATAATTAACATTACGTTTCCAACAATTCAAAATCATAACCCTCTCAG
TACTAAGCAACCAAGCCAAAATGGTACCTCATTCGGTCAGGATAAAGCTT
TACCGTCACTATCTGGGGAAGCTGTTAATTCCCAAGCAAGAAATAATGGA
TCAGTGCAGAATCAGAATCAAGCATCAGAGCAAAATAATCCAATTTTGAA
CAGAAATGAGGCTAATAATGCAAATGGACAACCTCAAAAACCAGGAGCAA
GCTTGAAAAATGGCTTTGGTGaacaaaattcaaatataaATGGTCAGATT
CAACCAGTTAGAGTTAACAACAACTTTGCAACTAACAACTCCAAACCTGC
TTCAAACAATCTAGCACAAAGCTCTAATCAGAATTATTTTCAAGGTgtac
aaaattcaaaaaccaAATCACAATCTCAGAATGTCAAAACTTTTTCAGAA
CAGAACACACCATTgtcaaactttatgaaaacaCCGACAGATCCAAATAT
TGTACTACCAAAAGGCAATTcattaataaaacaaaaacttcCTCAACTAA
AACAAAACAGAACATCTTCTAGATTGACCAATCAGGAGACCTCACAAAAA
GGACTTCTGCCAAACAAAAGTAAACCACTGGGTTCACAACAAAACCAAGA
AGCTGCATTAATAGAAAATCAAACACAACTACAAGATACAACAGGTGTTT
TAAATCACCCTGTGAAGAAGACTCCCATATCACCAATAGCAGGATCCATC
AACGACCAAAGTACAGCAAACCAAGTAACACCTACTACCCAAATCCAAac
aaaatcaaaccaatctTCACCAATTCAATCGCTTTTACCACAAACTTCAA
TCTCGCCACAAAACCTAGACCAATCTAAAACACCAACTTTTGCACAAAAT
CAACCAACTGCCACTAGAAATGAAACTAGTAAATTCTCCAAACAACAACC
TCTAACATCTTCAAATGAACAACTCCCGGCATTCCCAGAACAAAATCAGA
AATACTCCACAAGGAATAAAACTTCGACTGTCTCAGTGACCAgcagaaac
aaaaataataaccaGCCTCCAGCAATTGCTTTCTCAAGCTCTTCAAATCA
ACCAGATCTCCAAACTAAAGGATCGCTGTGCCAGACTACAAAATCACCAA
GAACTTCACTGCCTACACCGCCATCTCCACCATCTACACCACCTCCGCTG
CCAAGCACCACAAGACTTGAAGATGTCTTACCCTTAGAAATACCAATTGC
CATAATTAACATTACGTTTCCAACAATTCAAAATCATAACCCTCTCAGTA
CTAAGCAACCAAGCCAAAATGGTACCTCATTCGGTCAGGATAAAGCTTTA
CCGTCACTATCTGGGGAAGCTGTTAATTCCCAAGCAAGAAATAATGGATC
AGTGCAGAATCAGAATCAAGCATCAGAGCAAAATAATCCAATTTTGAACA
GAAATGAGGCTAATAATGCAAATGGACAACCTCAAAAACCAGGAGCAAGC
TTGAAAAATGGCTTTGGTGaacaaaattcaaatataaATGGTCAGATTCA
ACCAGTTAGAGTTAACAACAACTTTGCAACTAACAACTCCAAACCTGCTT
CAAACAATCTAGCACAAAGCTCTAATCAGAATTATTTTCAAGGTgtacaa
aattcaaaaaccaAATCACAATCTCAGAATGTCAAAACTTTTTCAGAACA
GAACACACCATTgtcaaactttatgaaaacaCCGACAGATCCAAATATTG
TACTACCAAAAGGCAATTcattaataaaacaaaaacttcCTCAACTAAAA
CAAAACAGAACATCTTCTAGATTGACCAATCAGGAGACCTCACAAAAAGG
ACTTCTGCCAAACAAAAGTAAACCACTGGGTTCACAACAAAACCAAGAAG
CTGCATTAATAGAAAATCAAACACAACTACAAGATACAACAGGTGTTTTA
AATCACCCTGTGAAGAAGACTCCCATATCACCAATAGCAGGATCCATCAA
CGACCAAAGTACAGCAAACCAAGTAACACCTACTACCCAAATCCAAacaa
aatcaaaccaatctTCACCAATTCAATCGCTTTTACCACAAACTTCAATC
TCGCCACAAAACCTAGACCAATCTAAAACACCAACTTTTGCACAAAATCA
ACCAACTGCCACTAGAAATGAAACTAGTAAATTCTCCAAACAACAACCTC
TAACATCTTCAAATGAACAACTCCCGGCATTCCCAGAACAAAATCAGAAA
TACTCCACAAGGAATAAAACTTCGACTGTCTCAGTGACCAgcagaaacaa
aaataataaccaGCCTCCAGCAATTGCTTTCTCAAGCTCTTCAAATCAAC
CAGATCTCCAAACTAAAGgTGAGATAGAGTGTTACAATGCAAGTGACGGA
ACCATCAAATGTAGAAATAAGATGCCACAACCTCACGTTTCTACGTCTCA
GTTCAAAGgTGAGATAGAGTGTTACAATGCAAGTGACGGAACCATCAAAT
GTAGAAATAAGATGCCACAACCTCACGTTTCTACGTCTCAGTTCAAAGgA
GACATCGGGATCAAAGCATCAGGACTTAACGGCACAAAGGTTCTCGGAGG
TGAGAGCACcaataaaatgaatgaaacaaTGAACTTCAAAGCTGGAAGAA
GCAACTATGATTACCAAAATTTGACGTCTCTCCATAACTGTAGCGGATGC
TTGGAAAATAAGgAGACATCGGGATCAAAGCATCAGGACTTAACGGCACA
AAGGTTCTCGGAGGTGAGAGCACcaataaaatgaatgaaacaaTGAACTT
CAAAGCTGGAAGAAGCAACTATGATTACCAAAATTTGACGTCTCTCCATA
ACTGTAGCGGATGCTTGGAAAATAAGGAATTGATCCACATCAACACATCA
AGCCCACTCAAACCCAACAAAACGAAATCACAATTCAACACTGAAACGCA
AGCACCACAGACGCAAAGTCCGAAACAAGGCCAGAAGTACCCTCACAACA
ATCTCTCTTCACACAATATaacaaaagctagcacaaaatttgctcaaaac
tatgaaaatcgaaccaaaacaaatcaaaaagttCCACTCGAAAGCGAATT
ATCCGAAATCTCAAAACTCCGAAACAAACTTCTATCTTCATCAACTAACA
GAACAAATTTCTTAACAAAGAATATAAGCAGACCAACATTGAGCAATCAA
ACAACAAACGCACCCATATTGAATCCAAAAACATCACATTTGAATCTAAA
CACATCAACGCGTGGACGGGAATTGATCCACATCAACACATCAAGCCCAC
TCAAACCCAACAAAACGAAATCACAATTCAACACTGAAACGCAAGCACCA
CAGACGCAAAGTCCGAAACAAGGCCAGAAGTACCCTCACAACAATCTCTC
TTCACACAATATaacaaaagctagcacaaaatttgctcaaaactatgaaa
atcgaaccaaaacaaatcaaaaagttCCACTCGAAAGCGAATTATCCGAA
ATCTCAAAACTCCGAAACAAACTTCTATCTTCATCAACTAACAGAACAAA
TTTCTTAACAAAGAATATAAGCAGACCAACATTGAGCAATCAAACAACAA
ACGCACCCATATTGAATCCAAAAACATCACATTTGAATCTAAACACATCA
ACGCGTGGACGG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000143_pilon | genome | sc0000143_pilon:604328..610602 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1564-1956:5883 |
| Aaloc | 1402-1563:5343 |
| Aaloc | 1312-1398:4322 |
| Aaloc | 64-1308:1108 |
| Aaloc | 1-60:1 |
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