|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000177_pilon:108687..114575+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_038208 ID=XLOC_038208|Name=XLOC_038208|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5889bp|location=Sequence derived from alignment at sc0000177_pilon:108687..114575+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCAACAAAAGAATATAGAGGGAGCAAGGATATATGCTGAGAATGCAAT
TCGTAAGAAGAACGAATCTCTCAACTATTTAAGAATGGCATCAAGAGTAG
ATGCCGTTGCATCACGTGTTCAAACAGGTGTCATGATGAAAAGTGtaagt
ttgttattgtttttcattCACAGCACAGCccaaaaaaaccggtcattatt
gtatttgttaaacgtttccttcagcttcgattaaTTCTTCGTGCTTTATC
Cagaaaaagtagagaaaaaaacgagaaaacaagcgtaaagagatcaaaaa
gatcaaaagatCATGTTTTAAATTCtgacttcaaaaatgaaaaatgagac
aaatgatgtcaacgcatagtgtttattttcctttgaaaaaactgacgtca
caatgaattttcctaacgacgggcaactctgtgcagtgtaggcccgttgt
catgcgaaaagaaccaattagattgcgcaaaaagccgtgtagctcGCTTC
AAAAAAGTAACTGGTTAACAAACGATCTTTTCCTTGAAGCTTTTACATGA
AAAACTTACATACGGTAAGTATGAGAAAATTTGGACTAGACGTTAAAAAG
TAAATCATTCttctcgtttttttttcatttcagttgaCAAAGACTATGGG
GAGCGTTGTTAAAGGGCTAGATAAAGCATTGTCTTCCATGGACCTCGGAA
AGGTAGGTTTTTGATTTCAACCTTAAGGGGTCTCTTTGGCTCCTCGAGAT
TATCCGCATATAAATAAATAGCAGTTCGAATGGTTATGAATTAAAAACAC
TTTCTATTTTAAGATTTACCATTTAAGATATTTTCATGGGCACACTGAAT
TTTATTTACAATAATTTGTAAGTTTTCGttcatttttttacaatttacag
GGTAATTTACAATTTACATGGTTTGTTGTTTTAATATGAAACAAATAAAC
ACAAAAACTCCTAGTTATGCTTTtataaacttatttcaaagttttaggaa
cttaaaaaagttaaaagttaaaAAAACATTACTTTTAGCTTTATCACAAG
CTATTTAGCAATAGCTCGTTTCGATTGAATGTTTCGGATTTTTTTCGCTC
TGTTCCTCTTTCTCCTATTCTGTTCTTACTCCAACACATCAATACTTCTT
TAAGTTTCCTTCTCGCTCTACTGTTCGTCGTCATGTATACTAACGCATTC
CCACTACTGTTCAAATTGGATAGCAACCGTAAAGCATACATGAGTAGATT
GTGGATCTTTCACATCCATGTAAGAGGATGGTGGGAAATGCGTTATATGA
TGTCCTTAGGAGTATTCAGCAAGTGCTTGTTTCGTTTGATTGTGTAGGAT
TCTGCTTATGTTCTGCCACTTTACTTTCTCCTATTTTATTCTTACGCCAA
CACATCAATACTTCTTTAAGTTGCCGTCTCGCTCTGCTGTTTGTCGTCAT
GTATACTAAGGCGTTCCCAGTACTGTTCAAATTGGATAGCAACAGTAAAG
CATACATGAGTAGAATGGAGCTACTTTTACCGAATTTCCGTTCAAAAGGC
TTCATAACTGGCAGAAATAAGATGATGGGTGCATAACATATGGTGACAAG
AATCAGGAAAGCAGAGGCTAGTTTGGTCATGCTCGCAGTGGAAGCCGAGA
TACGTTTTGATTGCTTGCGATGGCTTCTCAACTTTATAATTGAGATGATG
TACAGGACTAAGGCTAACCCAACAAATAACAGGTTAGCTGGTGATGAGTA
TCTCGCACCACCGTTTTGTCCGAATAAAGCTGGTCCGAATGTGGTGATCA
CTGCAGCATAAAATGCGAAAAAGATGTAGACGGCAAACAGTAGGTTATGT
CGTGTCGCCGTGATGATTGTCGTATAATGGGGTAGCAGCTTGACGTGTAG
GAATCTGTCTAAAGCCATGAACATGACAAGATAACATGATTGATAAATGA
AGATGTGTGGGAAGAGTAAAAGCATTCTCCTTTGGGAACATACCAGATGT
TCTGTATATAGAATGAAGATGATTTGGGTAATCGAGGCGATGACAGCTTG
TAGGATATCACATACTGAGATGATGAAAACTAAACGGAGCGAGCGTTTTT
TGTAATGGCCTGTCAAGACGTTGATATAACTTGATAAAGTGTTCAGCACT
GTATTGACTACAATCATGATTACATAACATGCCACCAGTATGTATCGTGC
TTGGTTGGACACGTATACGATGTTATCGTAATTGGAATAACAGTTTAAGA
AGATGGTAGCTGTTGATGTGAGGTTGTTGGTCGTCGTAATCGATGGTGGT
GCTTTTAAAACAGACTGGTTCATGGTTGAGCCGGTTGAAaatctgaaaca
aaaaaataaattttgatgaatatTTCTCCCCGTAACTGTGTTGTGGTTTG
GGTGCGGAAATTTAGTTCCTCGAGTTCAAATTCTGTAAAAATcccttgaa
aacgaaagttttCCGACAGAAAGTGGATGTTGTCCGTAGAAAAACGCCAG
tttctttctgtaaaaatatttcattgagGTGCTCCATTGCGAGATGTTGT
TGATGCTTTAAGCTTCTTTACAAAATATATAACATTCTTGATTGAAAAGT
TTGTCCCGCAAAATACATATTTAATTGAGTCTAAGATTAcacctttcaaa
tcaaaaattggATACATACCTTTTTGTGGCGttccaaaatttgatttttc
accCTAATCTTCTATAAAAAACTATCTTACTCTGGTTGTAGACCCTTTTC
CGCAAAGTATATTTTGGTACACGCCTATTGAATATTTGATGTGAGTTTTC
CACCTGAAAGATATCTCCTTTATATACACTCCACGCCATCTACGCCACAA
AACATCTGCTCTTCTTCTTTGTAGCACTTTAGGTTAAAGTGTATTACatg
gtgtttttttataagaacatccaaaatttcttgaagctttcggatgtaat
caacttttttagttttaagccttattcttaacggtttcttattttcatcg
gtttttttttagtatttttgtccatttttctgagaaaattCTTTTAGAGA
CTCCAAAGCCtgataatgttcttaacttgttctcaatattttggccctcg
aagccttttgttcttatatagtttgttcttataaagaaatgtgTATACAC
AATGTTTCCGACCCATCCCCCGTATCGACCAGTGTGTTGAGTCATATTAT
TATTACTTACGAGCGTTTGTTTTTAAAGTATAAAATATTCTAATaaacct
tcttttataaaaatatttttactttatgaTTTCAAACAACTGGTCAAGAT
GATTTACCGCAAAAACATGACAAAATTCTGTAAATTATATAATATACCTA
GAATACTACGCAAAAGATTGAAGCTAAATATTTTGAGCGTCTCAAAAACG
TACATTTCACTTTatcttaaaaatgtttaaatttaaaatttaggattata
aatctaactttcaaacTTACTAAACAATCAgagaataattttcaatttcc
gCGACTCGCTCTATCCATTTTATGTAATCAATTTTGTGCAATTTCACAGT
ATATACTACAAAAAAGTGTTCAAATATTAAGGACGCGTGTACGTATACGT
GTACGCCTCAAGTGGCTCCGCCCGCTTAAACAAAAAATAGGAAAGGTTAA
AGGGTTGAAAAATCGAGTTATTTTATTCTTACGAACAGCAAAATGCTTAC
tttattatgaattatttttttataattcattAGATTTCGGCCATTATGGA
GAAATTTGAGAAGCAATCGGAACACCTAGACGTTCATACATCTGTAAGTA
TTTTAATCATTTCTTTCCGATTTTTGATTGGCTCACGGAAGAATCACGGA
CAATATATGCATATGTGGCTTTTCCAGAAACAAAATTTTCCTGTCATGTT
GAAGGAATCTTCCTGTTTGAATTATTGAGATGGTACTTTCCCTGTATTGT
TGGCTCAACTTTTTATTGACCCTATGgaatttctagttttttttcagGGT
CTTGTCACACCCTTGCAAAAGGGTGGTAAACATTACCCCCCttcgccttc
agaggtttactgtgcccgtaagaaaattatgaccagctgttATCGGGTTA
GCACAAGAGTGATGACATCTTTTTGTTCACTTAGGTGATGGACGACACTA
TGGGAGCAGCTACCACTTTAAGTACGCCGCAAAACCAAGTTGATTCATTG
ATACAACAAGTGGCTGACGAGAACGGGCTAGAGGTCATGGACCAAATGTC
CGAATTACAGCCTGGTACCTCAACTCTCGCgtctacatcatcaaaagaag
cAGATCATGGAAGTAAAGATTCAGAGCTAGATAAAAGGTAAGTTTTGCTA
TAATAATATCAGTTTATCTAAAAAGACCTTGCGAAACCTAGCCACCGTGT
TATCAATGAAATTTACTCAAGTTTTGAAGTATTAAAAGAtctacagcacc
tgaccccgagaatgtaggtttctcattttttagcatggtagccctaacga
tagttcaacttcataaaaagttgtttcagagcaaaatgttacatattact
gattatttctagacataaagttttaacttgaattgattttttcaggcgaa
aatctgaatcgaagttaattggatactactcgaattgagacattttttaa
ataaatcctctctaaatggaaatctattggaattaagttatgatgatatg
gtattttcttattcctaatgaactaaggaaatgtggaaaatagtccattt
caatatttattgttctaaattagatattttaacgaaaatgttGTTAAccc
ttttggggttagttgacctacaatttgggagccttcataacccgacataa
aaagtctgtcaaattatataaaacttttttgttgtactttcataacatga
aagtattacctgagagatgattaatgttggcattttaagcttttacgacg
tgtcccagacccgctgggaccccagcccaatcagaaaatttgcctaagtt
tggaacaatagaatttctatccccattgggaatttagtagaaatttttga
cccgatgtgggaaaagttccaccggggctgtgaggcaggggtgttgttac
attttaacacagaatcttcaacctacaaaataaaaacaactttcttgtct
cttcttttcgtcctttcttttacttttcgttatttgtagcacgataaaat
taatatctttgttaattttttgtcagagtTTGTGAATTtctttacttatt
tattttaaGAAGAATGCAAAGTTAATTTCTAAAAttccgatgaatactga
aatttcgctcttagcaaccgaatcttttcacctacattatgggggttaaa
aagcgaaaaaatccaattttcagaatgacaaaagctctttagaatatttt
tttggcataaaatatttctaaaatttcctgttataattaattcaatcgaa
aaaatatcaacattttactattactagatttaaagccataaaaacaaacc
tacattctggggattataacgaaaatgggagtcaacttcaaggaccaaaa
gaATGAGcttatctatcaaaagtaatgaaactaacccctgggaaaggatt
ttgggagttcaaaatttcgtttaaactattcaatatttttttaaatgcaa
atctacatctccCAGGTCTGATTCaattttcacctacattctcggggtca
ggtgctgtatgtTTTAGGTAATTCGAAGAATGAGGAAAAGTTTTATCTCA
ACCTAAATTCAAATTGATGAATGAACTAAATATAACATACAACCGCTTAT
CTCCTTAAATTTTAAATCGTTTAGCTAAACtttgatttttatctttgatt
tttattttcatctacAGGCTTGCCGCACTGAGGAACTGa Coding sequence (CDS) from alignment at sc0000177_pilon:108687..114575+ >XLOC_038208 ID=XLOC_038208|Name=XLOC_038208|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=996bp|location=Sequence derived from alignment at sc0000177_pilon:108687..114575+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCAACAAAAGAATATAGAGGGAGCAAGGATATATGCTGAGAATGCAAT
TCGTAAGAAGAACGAATCTCTCAACTATTTAAGAATGGCATCAAGAGTAG
ATGCCGTTGCATCACGTGTTCAAACAGGTGTCATGATGAAAAGTATGCAA
CAAAAGAATATAGAGGGAGCAAGGATATATGCTGAGAATGCAATTCGTAA
GAAGAACGAATCTCTCAACTATTTAAGAATGGCATCAAGAGTAGATGCCG
TTGCATCACGTGTTCAAACAGGTGTCATGATGAAAAGTttgaCAAAGACT
ATGGGGAGCGTTGTTAAAGGGCTAGATAAAGCATTGTCTTCCATGGACCT
CGGAAAGttgaCAAAGACTATGGGGAGCGTTGTTAAAGGGCTAGATAAAG
CATTGTCTTCCATGGACCTCGGAAAGATTTCGGCCATTATGGAGAAATTT
GAGAAGCAATCGGAACACCTAGACGTTCATACATCTATTTCGGCCATTAT
GGAGAAATTTGAGAAGCAATCGGAACACCTAGACGTTCATACATCTGTGA
TGGACGACACTATGGGAGCAGCTACCACTTTAAGTACGCCGCAAAACCAA
GTTGATTCATTGATACAACAAGTGGCTGACGAGAACGGGCTAGAGGTCAT
GGACCAAATGTCCGAATTACAGCCTGGTACCTCAACTCTCGCgtctacat
catcaaaagaagcAGATCATGGAAGTAAAGATTCAGAGCTAGATAAAAGG
TGATGGACGACACTATGGGAGCAGCTACCACTTTAAGTACGCCGCAAAAC
CAAGTTGATTCATTGATACAACAAGTGGCTGACGAGAACGGGCTAGAGGT
CATGGACCAAATGTCCGAATTACAGCCTGGTACCTCAACTCTCGCgtcta
catcatcaaaagaagcAGATCATGGAAGTAAAGATTCAGAGCTAGATAAA
AGGCTTGCCGCACTGAGGAACTGaGCTTGCCGCACTGAGGAACTGa
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000177_pilon | genome | sc0000177_pilon:108687..114575 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 478-498:5869 |
| Aaloc | 274-474:4135 |
| Aaloc | 214-273:3734 |
| Aaloc | 145-213:634 |
| Aaloc | 1-144:1 |
|
