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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015129 ID=TCONS_00015129|Name=TCONS_00015129|organism=Clytia hemisphaerica|type=transcript|length=7821bpRun BLAST on NCBI transcript from alignment at sc0000204:55173..115574- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015129 ID=TCONS_00015129|Name=TCONS_00015129|organism=Clytia hemisphaerica|type=transcript|length=60402bp|location=Sequence derived from alignment at sc0000204:55173..115574- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00015129 vs. Swiss-Prot (Human)
Match: CFA47 (Cilia- and flagella-associated protein 47 OS=Homo sapiens GN=CFAP47 PE=2 SV=4) HSP 1 Score: 793.882 bits (2049), Expect = 0.000e+0 Identity = 582/1971 (29.53%), Postives = 950/1971 (48.20%), Query Frame = 1
Query: 1786 LQLSGLLMSPKLQCFPKEIQFQPVPLATKASQDVTLFYSHFLETSQITVNIPNIELEDGSLLNEILSIDFKHNNRSVKKCLSAQKNEVNKLSCCLTFKSTRPVCFNNFIEFICGETS--CKLGVSASADNCILTTYNFLANSSNDFHIVCEKFKDKVNSLDEKSTETVFVPNVSPIRAPTGVSLTNSTAFSLRSSSY--------------EDTGLDSSSPEFSEEGSIDQNLDSETFLLPYQFSEEIPISDTEEGK----ILREVLKCVQRWYSSQGWSHGPCPISVPGSLRSCLTAEHCXXXXXXXXXXXXXXXTXXXXXXXXXXKNIVELISHMCGKQVPGIPSNTSLPVDKKE-RIKSILWIYSTLITFIKCQGGMVANMTAHHLLDAADYHFYCDIMMTKES---SSDEISEDC-VTACHGGFEMKSRKAWTNLLLQIIKVFVLAKLTPSNYKNLTLPENYPPL-----PTFNPNPFCSNVYSISERILLAWLNHHYEQQRLKCWRQNDSGIKPPSRWIVNFENDFVDGLVLASLICAYAPYVVSTELKDLYTQPNSAEQCLHNALKVVNALRKLGIDYDIIATDITEPNPVNIVLLCVHLYQRLPHYLPSKTVQFTGSLFSTVTKQIKLQNPSNKAIVYQAILVGKHAQDFNVLQ-GNTIQVPAKGQVEISVDFKSRFLRECECTLVLVGKRVGSGVGSTMTFMLKGIVNSINPLKTLKFASPCYELKKITFPIKNPFSLGGSFRMVLVETDPNLHNMEPIAXXXXXXXXXXXXXRTDHGQXXXXXXXXXXXXXXXLFQKLAIENRTPLLSVFWSADKYIDLGPYATTDVEIQFLPFDLGTRQCSLLFLNEEIGEFLYSIHAESLLPLPTE-VPFFHDNEEKQNGSRVTSAMASHHSQGLLREDNSIIYMHCQADTETLDELDLPVHNYARGKALLLATXXXXXXXXXXXXXXTGITSAETILSALSCLQINDKADYKHPSELLGIFGTIQ-------EHSVEVSSP-FFSCPDLITIPVD--------TTSSCMEETVKLPITIKACDAGHYNCSIVLQAANDIRVYRIECTIKNPHSEVEMEFTSPAHQSVVQNVPVVNHSDLDWHLTSVIEGEGFTGPPSITAYARATTPYPLCFQPVYEGKVEGRLLLKNKSNGAERSFYLQGLATKPLPLDEIQIDCIVNEPTMKVLEVANKMPYKMVFQTFSDLDSITGPPFITVLPQQTASVPFNILTQRRGVQDGVVCFVYDANFVREMGLDRVYDIDSDDDEEGGKNTTKESHLSQDSNNAPPLISTECSSLQHINQSTQFRRPYKIWYSLRINSIPTEPIKCLEVQAYVFSSASIELLLKNPQNEELHLDVIIDGFHLYGEASVAVKPFSSTVYQLQYNPIVTGKSKASVIFQSDSCTEFWYDMVLIAENPLPKQLPIMQCPLGKSCYQGIPLVNPSVDDVTYDITCSNPNNFQLEGVDNMKVTIPSMGEVEVILSFVPSSLENNDHKAEILFFNDQQGSCFTFHAMGVVDKPNIADKYNLECELGGNASIIIPFHNPFFFDVLVDVDLQE-KNSQDEVFG---------------XXXXXXXXXXXPAKQTLDIPISYAPDQMRKQEASCKVYTRPFNADQSESSLYDN---------GL-------ICWTYEIEGIPTCIPIKTSNAPVVQCRTRQRIEEQIEVTFAGTETADNSSY--KALLKSLSPIHLVGQQNTRSDFAD--QFEDLEETLDYFIESGDADVDEDISRSVTVCLKRQSRHKITNAISLLFEVILSSSKTFNHLVHLIITSSSGAVWKYPIRFTSTEPISDDVITIKSTGLNKESKVVFRLSSQKSDSTHFNAYFASGYDDMFSVTPSTGELRAPKDNGTLFTIAYKPTFYGKTHRAKLLIQTREYQWIYDIKGETPEYTPPR-AMAAIESHLSNARFQRTNRKNYVRENLQIGSTAICQT 7443
L L+G + SP+L P I F PVPL D+ + ++ S + V IP + L DG ++ LS+ F R + S N KL+C L+FKS++PV F + F C + L V+A+A+NCILT Y ++A + +I+ + KD+ K T +P + P+ S+ + S + + E+ LD S + GS+++ E FL EEG +V+ Q W+S GW GP S+P ++R + S + R + + K I +++ H+ GK PGI S+ SLPVD E R+ + +S+L+ F+ QGG ++++ LL+ DY + +IM + + SS + C + FE S++AWT++ LQI KV VL+++ P N+ PP+ P NP SN+YS SERILL+W+N +YE R W+ + P RWIVNF+ D DGLV A+ + AY P+++ + ++YT+P S E+ LHN L +VN L ++ D +I ATDI +PNP+ +++LCV++Y+RLP YLP K V F +L TV +I L+N S++ +VY A +VG+ A DF++ Q GN + + + ++ +++ F SRF+R E +L+L+ K + G TMTF LKG V + +K SPCY+ +++T +KNPF G F ++LVE+ S K + H +++ S+ L ++ + F+ + + LG T+ +E++FLPF++ R C ++ N++IG+ +Y + + PLP+ +P N S ++ +G + ++Y+ C+ +L LP+ N A+ KAL A +Q+MS E RR TG + +I A++ L + E L +F + ++ EVS P +F P+ I+IP + + + +V LP+ +G Y C I+L++ D+R Y +E + E + EF +PA +++ QN+P+ N ++ W IEGE F GP + YPL F+P++E + G+L+L+N+ +G E F ++G+ KP L+ I ++C V T K + + + + F+ +DL + G P ITV P + ++ +RG+ G + F D Y+ D+D D+ DS I+ + S L + F + WY+L I+S P PI+ +E+ S IE+ L NP++ LHL+V + L G+ + + P T Y + Y+P TG S S+IFQ + EFWY + L E P P +P +QC LGK Q IPLVN + + + +T SNP NF L+ ++ I E+ + F PS+L DH+A I F+ Q + + F+ GV P D + +G ++I+IPF NP DVL+D+ L ++ ++ V + + + LP K +DI + + P M+ + + N +D G+ I W Y I G+P P K+ V+QC++R+R EE++E+ N+ + +L L+ + ++ ++N+ + D + + E +Y I+ + + V + + +S + I+ +F ++ + K + L I + +WK+PI +TEP +D VI I+ GL KES RL SQ + F A+F G D F V P GEL NGTL T+ +KP Y + ++A L+IQT E W Y+I G TP PP+ A A I++ N+VREN ++ T + T
Sbjct: 1209 LHLTGEVKSPELLFDPPFIFFTPVPLDITTVMDINILPQNYFRNSTLCVQIPTVRLLDGEEIHP-LSVKFP-KGRVIPGSHSGINN---KLTCHLSFKSSKPVSFFTNLLF-CDDRKNWFSLPVTATAENCILTIYPYMAIHLDKQNIILKNDKDEY----LKKTRDGVLPPYQDAKPPSPASIKKTYTTSKFNDAEPAKGNLFIGVEVLPENLHLDESETSEEDHGSLEKE-KYEQFL------------SLEEGTKAHYFFEKVVNAAQTWFSLFGWPEGPHSFSIPETIRRDV------YKMQFYSSTSPPQKFSRQNDFSKYNKTIYDVLLHLSGKMPPGINSSQSLPVDNHEKRVIQLHLQHSSLLDFLNAQGGCISHVLPEFLLEPEDYKRWIEIMSSTNTMPVSSCTPKKKCSIVIEMSKFEAWSKRAWTDVFLQIYKVLVLSRVVPYCSNNM------PPICVQNTPKVNPCFASSNIYSDSERILLSWMNINYENTRHVIWKNCHKDVIPSERWIVNFDKDLSDGLVFATQLGAYCPFLIESHFINMYTRPKSPEEYLHNCLIIVNTLYEIDFDVEIQATDICDPNPILMLMLCVYMYERLPTYLPKKVVSFECTLHDTVLNKILLKNSSSRNLVYNARIVGRDAADFSLSQKGNVVTISPRNEINVTLKFTSRFIRPAEASLLLISKPKNAVRGITMTFALKGKVLDFKAIDIIKCESPCYQFQEVTVNVKNPFHTAGDFSVILVESS---------TFVSSPTKLTESRQYPKHDDDMSSSGSDTDQGCSDSPNVLHTSIKSTFIREFFCSMHTVHLGVKGTSSLELRFLPFNMHVRYCVIILSNKKIGQLIYVAEGKGMTPLPSSCLPM--------NTSSSPVYYSTTREEG-PNKKYPVLYLKCKPYQILYVDLKLPMTNEAKEKALAFAAQQQMSSIEYERRLITGTLESSSIRVAIALLGLTK-------IETLMLFRISKLRKPKTVSYTTEVSLPKYFYIPEKISIPWIPEPQVIKLSKAKASDGSVPLPLQFLPLQSGRYPCKILLKSRYDVRAYYVEGIVNEEQPEAKFEFETPAFEALTQNIPIKNQTNDKWTFQVTIEGEWFYGPVDLHVGPDEIVEYPLTFKPIFECVITGKLILQNEVDGREHIFDIKGVGKKPSALEHITVECQVGNVTQKHITLPHFTNTALTFKVTADLPIVWGNPQITVYPYKEILYLIHVRPWKRGILKGTITFSTTRRCTTRRKHDD-YEEDTDQDQALS---------CLDS------ITEQSSILDDADTYGNFNN-LRFWYNLEIHSTPGPPIEIMEMTCIALDSTCIEIPLSNPKDRGLHLEVQLTSAALNGDNEIILSPLQCTKYIVWYSPATTGYSDESIIFQPEMAEEFWYLLKLTIELPKPTTMPEIQCDLGKHVTQIIPLVNCTHETLKLQVTNSNPENFVLDINRKSQLIISPHSTTELPVLFYPSALGRADHQACINFYC-TQFTEWKFYLSGVGLFPQPLDTERITTRIGLQSTIVIPFKNPTMEDVLIDIILTSVEHPRNLVMDHCWDSFIYESSAFRFSSPSEIQGIALPPKGNIDISLLFIPQIMKLHKTMVIIEMTKANGKYWPIDNFDELDIKFKSIVGIDSEEIQAIHWIYPIVGLPQAPPPKSPPV-VIQCQSRKRAEEKVEIIL-------NAGFFGFSLTPDLTEVLVIPKRNSHNFCEDPNEIPKIHE-FEYEIQFESEAMKSKLESCVALYMIEKSYDIMAKRITFIFNLVFTPKKPLRSHITLKIECVTEGIWKFPIMLIATEPDTDAVIDIEGVGLFKESVFELRLKSQTRNPEPFTAHFLPGSDLEFFVKPQAGELLPFNTNGTLITVGFKPKMYCRKYKATLVIQTEEMYWKYEINGLTPTTVPPKNAKAKIDATHKTHDNMPVRPHNFVRENTKLIRTGVSST 3092 HSP 2 Score: 264.618 bits (675), Expect = 2.087e-70 Identity = 152/399 (38.10%), Postives = 217/399 (54.39%), Query Frame = 1
Query: 40 LIDFGDICRKSITSKTLKIANNLPQNILVNFDVDCKELRQTSPLSQVIPPNSVAKLEFIFESPREGKFERSINYTINTQHQNHILIHANVVGIALELTETELFLHPIHGAPVETGFRKTVDLINTRNMVAEFVWTPVLSPEGTSFTIRPAKGVVEPYSRLTLEVTFYPSYSASCVGRFVATVEGGKDLTLDCRAQMGYASCSFIERRLMFGALPLQLITSRSAYLKNTSNNHAFFKVMNASPIDGMVINPKQGVVPVGGITEIQVLYRPESVQKFDTTIQVDIYGWKTISLRMGGQAEYPIVDINLRSFSFGGIYTGAVAKVPFKIDNVGRSNVLVVFNLSLFRDFKVFFPDHYEYSENNG---IFHVNLSGHQTVHAELQFLPTEVAAYDFFLPVSIN 1227
+++FG+IC S + L + N LP ++L+ D D +EL++T+ S VI P S + +F+SP GKF +S +T+N HIL+ A V + LEL+ EL L P G ++T FR TV L N +N A+F W PV + G +F+I PAKG VE YS L EVT+ +S+ G F+ V G L L C A +G ++ R++F P L T R A L+N NHA+FKV + S + + I P QG+VP GGIT + + +P +KFDT +V I I LR+GG AE V+IN F+F G Y G +PF I N G + V FNL F DF + D E ++ I+ + L + ++ + F P EV +F + V IN
Sbjct: 755 VLNFGNICVNSPNTHLLHVINMLPMHVLLQLDTDLEELQKTNQFSYVILPTSSTYISMVFDSPTIGKFWKSFTFTVNNVPSGHILVVAVVQPVTLELSSNELVLRP-RGFFMKTCFRGTVRLYNRQNCCAQFQWQPVNTGRGIAFSICPAKGTVEAYSSLECEVTWQQGFSSPEEGEFILHVFQGNALKLKCVAHLGRTKVLLLQPRILFSNCPQGLTTWRKAILQNVGQNHAYFKVCSQSLLPIINIIPSQGIVPFGGITVLNISCKPTVAEKFDTRAKVSIRHANVIDLRIGGSAEIADVEINPDVFNFSGAYIGGTQIIPFVIKNKGITRARVEFNLKDFPDFSMDLKDKSEEFKDPAVPYIYSLELEENTSLECSITFSPKEVTVVEFIIQVQIN 1152 The following BLAST results are available for this feature:
BLAST of TCONS_00015129 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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