TCONS_00015081 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015081
Unique NameTCONS_00015081
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length745

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015081 ID=TCONS_00015081|Name=TCONS_00015081|organism=Clytia hemisphaerica|type=transcript|length=745bp
CTAACCCTAAACGAAATCAAGAATGGAAACGAATCATTTACCGGTATCGA
CGAAAGGGAGGAAAAGATAAGTTCAAAATCACATCTACCTGATCTACAAC
AGTTATCTgtgaatttcattttaaagcagAGGACATTAAAGTCACCCTTG
GAACACATAAAAAGGTTTTAAGGAAAGGAGCAANGATTGGTTTACGTTTA
GCTGAATGGCCTAAAGAACTCATCCAAGGTTTTCCCATGAAAGAAAGTGT
GGAACAACTCCAGACGATTCCTTTATTTTTGATCGCTAAAAGCTGTCCTG
GAAGCTCTCTTGCTAAGCTGGAATGGAggatttcattttcactggtCGAG
CTAGAAATCCTAATCAATTTACCATATCAAAGGAAAGCTTTCCTTCATTT
AAAGCATCATCTAGAAAAGGTTGAGGAGATTCCatcatattttttgaaaa
caacatTGTTAACAATATCTGCATATTTTCAGCAGGAGTATCCCCAGGAA
GAATGGAATACAGAAATGTTTTATAAAGAATTAACTGATAACCTAGAAAG
GGCCATTCTTAAGAAAAACATACCTAACTTTTTTCTACctgaacaaaatt
tgtttttactaGAGGAAGAAGATTTGAGTTATGGAACGAAAACGAAATCT
TGGGACGATATCTATGCTCAGATAATAAATTCAAAGTCGATTGACTTTAG
ATTTCCTGTTGCTGGAAACAACATCGACTTGAATGATAATGACGC
Run BLAST on NCBI

protein sequence of TCONS_00015081-protein

>TCONS_00015081-protein ID=TCONS_00015081-protein|Name=TCONS_00015081-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MKESVEQLQTIPLFLIAKSCPGSSLAKLEWRISFSLVELEILINLPYQRK
AFLHLKHHLEKVEEIPSYFLKTTLLTISAYFQQEYPQEEWNTEMFYKELT
DNLERAILKKNIPNFFLPEQNLFLLEEEDLSYGTKTKSWDDIYAQIINSK
SIDFRFPVAGNNIDLNDND
Run BLAST on NCBI

transcript from alignment at sc0000203:91591..92335

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015081 ID=TCONS_00015081|Name=TCONS_00015081|organism=Clytia hemisphaerica|type=transcript|length=745bp|location=Sequence derived from alignment at sc0000203:91591..92335 (Clytia hemisphaerica)
GCGTCATTATCATTCAAGTCGATGTTGTTTCCAGCAACAGGAAATCTAAA
GTCAATCGACTTTGAATTTATTATCTGAGCATAGATATCGTCCCAAGATT
TCGTTTTCGTTCCATAACTCAAATCTTCTTCCTCtagtaaaaacaaattt
tgttcagGTAGAAAAAAGTTAGGTATGTTTTTCTTAAGAATGGCCCTTTC
TAGGTTATCAGTTAATTCTTTATAAAACATTTCTGTATTCCATTCTTCCT
GGGGATACTCCTGCTGAAAATATGCAGATATTGTTAACAatgttgttttc
aaaaaatatgatGGAATCTCCTCAACCTTTTCTAGATGATGCTTTAAATG
AAGGAAAGCTTTCCTTTGATATGGTAAATTGATTAGGATTTCTAGCTCGa
ccagtgaaaatgaaatccTCCATTCCAGCTTAGCAAGAGAGCTTCCAGGA
CAGCTTTTAGCGATCAAAAATAAAGGAATCGTCTGGAGTTGTTCCACACT
TTCTTTCATGGGAAAACCTTGGATGAGTTCTTTAGGCCATTCAGCTAAAC
GTAAACCAATCNTTGCTCCTTTCCTTAAAACCTTTTTATGTGTTCCAAGG
GTGACTTTAATGTCCTctgctttaaaatgaaattcacAGATAACTGTTGT
AGATCAGGTAGATGTGATTTTGAACTTATCTTTTCCTCCCTTTCGTCGAT
ACCGGTAAATGATTCGTTTCCATTCTTGATTTCGTTTAGGGTTAG

Coding sequence (CDS) from alignment at sc0000203:91591..92335

>TCONS_00015081 ID=TCONS_00015081|Name=TCONS_00015081|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at sc0000203:91591..92335 (Clytia hemisphaerica)
GTCATTATCATTCAAGTCGATGTTGTTTCCAGCAACAGGAAATCTAAAGT
CAATCGACTTTGAATTTATTATCTGAGCATAGATATCGTCCCAAGATTTC
GTTTTCGTTCCATAACTCAAATCTTCTTCCTCtagtaaaaacaaattttg
ttcagGTAGAAAAAAGTTAGGTATGTTTTTCTTAAGAATGGCCCTTTCTA
GGTTATCAGTTAATTCTTTATAAAACATTTCTGTATTCCATTCTTCCTGG
GGATACTCCTGCTGAAAATATGCAGATATTGTTAACAatgttgttttcaa
aaaatatgatGGAATCTCCTCAACCTTTTCTAGATGATGCTTTAAATGAA
GGAAAGCTTTCCTTTGATATGGTAAATTGATTAGGATTTCTAGCTCGacc
agtgaaaatgaaatccTCCATTCCAGCTTAGCAAGAGAGCTTCCAGGACA
GCTTTTAGCGATCAAAAATAAAGGAATCGTCTGGAGTTGTTCCACACTTT
CTTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008443XLOC_008443Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015081-proteinTCONS_00015081-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015081-exon-sc0000203-1491911889:91591..92335TCONS_00015081-exon-sc0000203-1491911889:91591..92335Clytia hemisphaericaexon
TCONS_00015081-exon-sc0000203-1510915933:91591..92335TCONS_00015081-exon-sc0000203-1510915933:91591..92335Clytia hemisphaericaexon
TCONS_00015081-exon-sc0000203-1575043694:91591..92335TCONS_00015081-exon-sc0000203-1575043694:91591..92335Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000203supercontigsc0000203:91591..92335 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.0796672	0	0.0790383	0	0.0613362	0.495737	0.921283	0	0	0	0.0655929	0.187279	0.947055	0.27659	0.388777	0	0	0.14213	0.37999	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024810Mab-21_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015081 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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