TCONS_00014999 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014999
Unique NameTCONS_00014999
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length822

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014999 ID=TCONS_00014999|Name=TCONS_00014999|organism=Clytia hemisphaerica|type=transcript|length=822bp
AGATGATTAGATAATTTGACGGAAATATCCGATGGAAGAATTTGATTCAT
TCTATTCAAACACAGCCATTTGATATCAAGGAATTCGGGTTGCAAATTTT
GAACTGTTTATATGGAAAATGTTTATGAAAATATGGATTCCAGTTTTCTC
GGAAATTTACGAAGGGGTTCGTGTTTTCACCGAAATTTGAGTGAGTCCGT
GTTTTCGTCAAAGTTGGGATTCgagtttttgcaaaaatttgaggGGGGCC
GTGTTTTCGCCAAAGTTTGGGGTCCgtattttctcgaaaatttgaGGGGG
TCAttgttttctcgaaaatttgaGAGGGATccgtttttttcgaaaatttg
aggGGGGTCCGTGTCGAAAATTTACGAGTGGTCCAGGTTTTCGTAAAGGT
CCGAGGTCAGGGTTTTCTTCAGGTCTAGGGTCCGGTCTGGGTCCTGGTTA
TACAGTACGCCTTTTGGACCCACccgtaggtcctataaattgaACGTTGT
GTGTCCGTCCTTCCACTCGTTCGTTATTGTGCTTTTCACGATCAGAAATG
TTCTAAGAGGTTTTTCGGGATATTTTCGAGATGTTCCCATtagcccaaaa
cttagcatcatTTAATATCGAAAGCAATCACTTTTCAACCCGGGACTCCT
TGAAAATTGCCGGAACAGTCTCAAAAGCCGATATAAAACGGGTTTTTCAA
TGTTTCCAGTTacactcgacagattttcatgaccTTGCTTTTGCACAAAT
AAGCTGATACTAATTCCAGAAATGTGAAAatacgaagaaaaaaattccgg
GTCTCCAGATCTGTAAATGTGC
Run BLAST on NCBI

transcript from alignment at sc0000201:309883..310704

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014999 ID=TCONS_00014999|Name=TCONS_00014999|organism=Clytia hemisphaerica|type=transcript|length=822bp|location=Sequence derived from alignment at sc0000201:309883..310704 (Clytia hemisphaerica)
GCACATTTACAGATCTGGAGACccggaatttttttcttcgtatTTTCACA
TTTCTGGAATTAGTATCAGCTTATTTGTGCAAAAGCAAggtcatgaaaat
ctgtcgagtgtAACTGGAAACATTGAAAAACCCGTTTTATATCGGCTTTT
GAGACTGTTCCGGCAATTTTCAAGGAGTCCCGGGTTGAAAAGTGATTGCT
TTCGATATTAAatgatgctaagttttgggctaATGGGAACATCTCGAAAA
TATCCCGAAAAACCTCTTAGAACATTTCTGATCGTGAAAAGCACAATAAC
GAACGAGTGGAAGGACGGACACACAACGTtcaatttataggacctacggG
TGGGTCCAAAAGGCGTACTGTATAACCAGGACCCAGACCGGACCCTAGAC
CTGAAGAAAACCCTGACCTCGGACCTTTACGAAAACCTGGACCACTCGTA
AATTTTCGACACGGACCCCcctcaaattttcgaaaaaaacggATCCCTCt
caaattttcgagaaaacaaTGACCCCCtcaaattttcgagaaaatacGGA
CCCCAAACTTTGGCGAAAACACGGCCCCcctcaaatttttgcaaaaactc
GAATCCCAACTTTGACGAAAACACGGACTCACTCAAATTTCGGTGAAAAC
ACGAACCCCTTCGTAAATTTCCGAGAAAACTGGAATCCATATTTTCATAA
ACATTTTCCATATAAACAGTTCAAAATTTGCAACCCGAATTCCTTGATAT
CAAATGGCTGTGTTTGAATAGAATGAATCAAATTCTTCCATCGGATATTT
CCGTCAAATTATCTAATCATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008392XLOC_008392Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014999-exon-sc0000201-1491911889:309883..310704TCONS_00014999-exon-sc0000201-1491911889:309883..310704Clytia hemisphaericaexon
TCONS_00014999-exon-sc0000201-1510915933:309883..310704TCONS_00014999-exon-sc0000201-1510915933:309883..310704Clytia hemisphaericaexon
TCONS_00014999-exon-sc0000201-1575043694:309883..310704TCONS_00014999-exon-sc0000201-1575043694:309883..310704Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000201supercontigsc0000201:309883..310704 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.169313	0.131059	0.192332	0.0780485	0.12335	0.0744082	0	0.0487707	0.0604103	0	0	0.0384912	0	0.0328637	0.0705355	0.785581	1.6428	0.430661	0.193138	0.704142	0.327529	0.251025	0.270607	0.559246	0.59873	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00014999 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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