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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014877 ID=TCONS_00014877|Name=TCONS_00014877|organism=Clytia hemisphaerica|type=transcript|length=5778bpRun BLAST on NCBI transcript from alignment at sc0000200:128603..158966- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00014877 ID=TCONS_00014877|Name=TCONS_00014877|organism=Clytia hemisphaerica|type=transcript|length=30364bp|location=Sequence derived from alignment at sc0000200:128603..158966- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00014877 vs. Swiss-Prot (Human)
Match: KALRN (Kalirin OS=Homo sapiens GN=KALRN PE=1 SV=2) HSP 1 Score: 357.451 bits (916), Expect = 3.381e-99 Identity = 204/520 (39.23%), Postives = 303/520 (58.27%), Query Frame = 1
Query: 3499 DPKSTFEVAPEFKILPRDVTVEVATHVKLTCTVLANPTPNVIWTKNDHIELQSGDKYQIDFKNSMC-----TLEILSTEVSDTGTYTVTASNNLGTASYSAKITVRGENKPGAPSKPFFTSVTPTSLDIRWYPPSDIDNCPVSGYTVQYQVLGSSTWQMAVAACHDTRTTVENLIAGKSYRFLVTAHNNQGNSVESEPSDPICVGDIASPRRNVHEIKWREKVENHYQICGELGRGRFSIVKRCVEKSTNKEYAAKIVRRRMVKKETVESEVAILQELNHSAIVSLHEIYDAPNGLVLVEQLLTGGRLFDHIVIMDNLTEQIAVRHVKELLLAISYLHKNNIAHLDVKPENILL-TGGESPSVVVSDFGDAVRINKRVPYQHELSGNPEFAAPEIVSGDTISLATDMWSXXXXXXXXXXXXSPFYSDNRERACANVTEIRYTFPDDFFAEISDEAKDFIEELLVRDQTSRPDADECLNFAWMKMTEP--RKIPIELSRLAAFNARRRYQYESNNQSNVTS 5034
+P EVAPEF + DVT + V L C V P P + W D L + D + S C TL+I + D+G YT A+N+ GT S SA + V+G P AP++P + TS+ +RW PPS NC +SGYTV+Y+ GS WQ +VA+ DT +E+L G Y+F V+A N G S+ SEPS+ + + + + I W+E ++ Y E+GRGRFSIVK+C+ K+T K+ A K V ++M KKE E A+LQ L H ++LH+ Y++P +L+ +L+ GRL D+++ D L E+ ++++++ A+ YLH +AHLD+KPEN+L+ P V + D DAV+I+ + H L GNPEFAAPE++ G +SL TD+WS+GV+ +V+L GVSPF +++E C NV + ++FP ++F +S+ A+DFI +L D RP A CL W++ KIP++ SRLA F RR++Q + NV S
Sbjct: 2461 NPNFIQEVAPEFLVPLVDVTCLLGDTVILQCKVCGRPKPTITWKGPDQNILDT-DNSSATYTVSSCDSGEITLKICNLMPQDSGIYTCIATNDHGTTSTSATVKVQG--VPAAPNRPIAQERSCTSVILRWLPPSSTGNCTISGYTVEYREEGSQIWQQSVASTLDTYLVIEDLSPGCPYQFRVSASNPWGISLPSEPSEFVRLPEYDAAADGA-TISWKENFDSAYTELNEIGRGRFSIVKKCIHKATRKDVAVKFVSKKMKKKEQAAHEAALLQHLQHPQYITLHDTYESPTSYILILELMDDGRLLDYLMNHDELMEEKVAFYIRDIMEALQYLHNCRVAHLDIKPENLLIDLRIPVPRVKLIDLEDAVQISGHF-HIHHLLGNPEFAAPEVIQGIPVSLGTDIWSIGVLTYVMLSGVSPFLDESKEETCINVCRVDFSFPHEYFCGVSNAARDFINVILQEDFRRRPTAATCLQHPWLQPHNGSYSKIPLDTSRLACFIERRKHQNDVRPIPNVKS 2975 HSP 2 Score: 235.343 bits (599), Expect = 1.009e-61 Identity = 116/313 (37.06%), Postives = 200/313 (63.90%), Query Frame = 1
Query: 1804 RAVLKRMTVLRELIKTENDYINDLELIELKYRPAFLQRDD---IPEELKNRDRIIFGNLTDILDFHKGTLIKDLQQCESTPENLPNVFLKSEKKFEHYIQYCANKPRSATLIHDHLPNIFADISNQLQLKSSLDEYLMKPISRIMNYHTVLKDYIKYTQRAGLNTDLLFQALHVMQSIPKKSDDVMNIGMLEGFKDNLNEQGKLLIQDTLYVA--NAKLQEASSERRVFLFEQMVIFCEPFERKTNLKAYMYQYSIETHTLGLTQSSFDDDPCKLAIWSKKEDGSSDIYVMAAQNATAKKTWIDSIRRILEDQ 2727
+A+ RM VL EL++TE DY+ DL ++ F++R + +PE+++ +D+I+FGN+ I D+HK + +L++C + L +F+K E+K Y+ YC NKPRS ++ ++ F ++ ++ + +L ++L+KPI RI Y +LKD+++Y+++AGL + +A+ +M +PK+ +D+MN+G L+GF+ L QGKLL QDT YV +A +Q + ERRVFLFEQ+VIF E + + YM++ SI+ + L L + + D+DPCK A+ +++ +S+ V+ A NA ++ W+ I ++LE Q
Sbjct: 1924 KALRGRMFVLNELVQTEKDYVKDLGIV----VEGFMKRIEEKGVPEDMRGKDKIVFGNIHQIYDWHKDFFLAELEKCIQEQDRLAQLFIKHERKLHIYVWYCQNKPRSEYIVAEY-DAYFEEVKQEINQRLTLSDFLIKPIQRITKYQLLLKDFLRYSEKAGLECSDIEKAVELMCLVPKRCNDMMNLGRLQGFEGTLTAQGKLLQQDTFYVIELDAGMQSRTKERRVFLFEQIVIFSELLRKGSLTPGYMFKRSIKMNYLVL-EENVDNDPCKFALMNRE---TSERVVLQAANADIQQAWVQDINQVLETQ 2227 HSP 3 Score: 220.32 bits (560), Expect = 3.733e-57 Identity = 146/468 (31.20%), Postives = 238/468 (50.85%), Query Frame = 1
Query: 1792 DSEERAVLKRMTVLRELIKTENDYINDL-ELIELKYRPAFLQRDDIPEELKNRDRIIFGNLTDILDFHKGTLIKDLQQCESTPENLPNVFLKSEKKFEHYIQYCANKPRSATLIHDHLPNIFADISNQLQLKSSLDEYLMKPISRIMNYHTVLKDYIKYTQRAGLNTDLLFQALHVMQSIPKKSDDVMNIGMLEGFKDNLNEQGKLLIQDTLYVANAK-LQEASSERRVFLFEQMVIFCEPFERKTNLKAYMYQYSIETHTLGLTQSSFDDDPCKLAIWSKKEDGSSDIYVMAAQNATAKKTWIDSIRRILEDQHGKGINVNSRLGPPKAVTKALKSYRKVSRQSIGSNSSFNSDDIQLNGGGGGRPQLTDKMGKIIPSLQHVNLVPLDQLKGKKGSNEDLSKPTIEHKRYMVTENYQALSSEELSVHKGEIVYLIHRDKKSATFYRVRSFTKER----EGLVPSKIL 3177
+ + ++ K+ ++ EL++TE Y+ DL E +E ++IP + N++ IIFGN+ +I DFH +K+L++ E PE++ + F+ KF+ Y+ YC NKP S LI +H F +I + L +S+ YL+KP+ RI Y +LK+ + + L L VM S+PKK++D M++ MLEGF +NL+ QG+L++QD V + K L ER +FLFE ++F + + + Y+Y+ + T LG+T+ + DPCK A+WS + S + V+ A N K+ WI +IR ++++ + I++ L P + K R S++ +DI G G +P I S N V D+L G + +V +++ A S EL++ G+ V L+ R + + VR T ER EGLVPS L
Sbjct: 1273 EEKRKSARKKEFIMAELLQTEKAYVRDLHECLETYLWEMTSGVEEIPPGILNKEHIIFGNIQEIYDFHNNIFLKELEKYEQLPEDVGHCFVTWADKFQMYVTYCKNKPDSNQLILEHAGTFFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCCEEGKGE---LKDGLEVMLSVPKKANDAMHVSMLEGFDENLDVQGELILQDAFQVWDPKSLIRKGRERHLFLFEISLVFSKEIKDSSGHTKYVYKNKLLTSELGVTE-HVEGDPCKFALWSGRTPSSDNKTVLKASNIETKQEWIKNIREVIQE---RIIHLKGALKEPLQLPKTPAKQRNNSKRD-------GVEDIDSQGDGSSQPDTIS-----IASRTSQNTVDSDKLSGGC-------------ELTVVLQDFSAGHSSELTIQVGQTVELLERPSERPGWCLVR--TTERSPPLEGLVPSSAL 1706 HSP 4 Score: 186.422 bits (472), Expect = 6.535e-47 Identity = 110/297 (37.04%), Postives = 174/297 (58.59%), Query Frame = 1
Query: 433 KAGLDVMLSVPRRANDAMYLCLIKGFDEQGSLETLGKILLQDSFTIFDPKHILKKAKDRHVFLFEQALLFCKENKDTNGKCTFEFKTKLKTSEMGITEYMAEDKCKFAVWTGAPPYTEEKRIIKAESEEVKHMWVKEIRNLTQQFQF---GLLQARASFYPTSPRKRGNRKSTSQADISFSSDTYNNDRALSDCDTATICSRLSLDNSSMIVTDRY-------IVTDDFTPKPGHEHEIALIKGQTVDILGRPPGSASWRVRIMDSDVTGDAEGLVPFNVLKKIEESPLRNKRSSVE 1293
K GL+VMLSVP++ANDAM++ +++GFDE +L+ G+++LQD+F ++DPK +++K ++RH+FLFE +L+F KE KD++G + +K KL TSE+G+TE++ D CKFA+W+G P ++ K ++KA + E K W+K IR + Q+ G L+ T ++R N K DI D S DT +I SR S + + +D+ +V DF+ GH E+ + GQTV++L RP W + + ++ + EGLVP + L + + RSSVE
Sbjct: 1440 KDGLEVMLSVPKKANDAMHVSMLEGFDE--NLDVQGELILQDAFQVWDPKSLIRKGRERHLFLFEISLVFSKEIKDSSGHTKYVYKNKLLTSELGVTEHVEGDPCKFALWSGRTPSSDNKTVLKASNIETKQEWIKNIREVIQERIIHLKGALKEPLQLPKTPAKQRNNSKRDGVEDIDSQGD------GSSQPDTISIASRTS---QNTVDSDKLSGGCELTVVLQDFS--AGHSSELTIQVGQTVELLERPSERPGWCL-VRTTERSPPLEGLVPSSAL------CISHSRSSVE 1716 The following BLAST results are available for this feature:
BLAST of TCONS_00014877 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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