XLOC_024441 (gene) - C. hemisphaerica

Overview
NameXLOC_024441
Unique NameXLOC_024441
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0002370:9254..15650+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_024441 ID=XLOC_024441|Name=XLOC_024441|organism=Clytia hemisphaerica|type=gene|length=6397bp|location=Sequence derived from alignment at sc0002370:9254..15650+ (Clytia hemisphaerica)
CGAAAGTTTTTGCACCAGTAAACCAAATGTTTTCTTCTCGACTAACAATG
CTTTGTATTTTACAATTTACAGGCAATAGAATAAGTCGACATGGACTTGG
TGATTATGCAACAACTGCTGCTTTTGACTTGCTGAAAGCTTCTGGTGAAA
TTATCACCACTACTGGACGAATGCTGCAAGACAAAGAAGTAGCTCACGGT
ATAGTGCGGggaatatgatacaaaatataCACCAGTATTCAGTATTTATC
TTTTGAAATCAGTAAAAAACAACTGCGCGAACTTACCGTCagggaaattt
tgaaagtaaCTTTTATCGTTCGTTGTACATTTTCCATCCGTAACTTTTGA
GTGAGAGGGCAAGGTAGATCTTTCGCCTTAACTTTCGTTTGCTTCAGTTT
GCTTTCAATTatcaatttgtttgataaaagtcCAGAGCTTGAAAGTTATT
TAATATTGGATCAATAAAATTCGATGGACAAAAATCCGAAGGATTTCGTA
ACAGGATCAAAATGACGTATACAGGTCTGGTTTTGGCAGCCGTAACTGTA
ACAAATATTTCTATTCTTTATTCTATTCTTTACAAGGTATCCTTATGGTA
GTTGCGTGGATAATTTGTTCAACTATCGGCATTTTCATGGCTCGTTACAT
GAAGCAAGCtactaaagaaaagaaaatcaccGGTAAACCGGCTTGGTTCC
CTGTGAGTGATTTTTAAGCGTTTGAAACGGGGGAGGGGTTAAGCTTAAAG
CTGTAATGTCCACATTGTTTACAGTTGTGTCCAGTAGTACTTACAATACA
CAGTAGACGTCTGTCTGCTCACGCTCGAACAAAGAAGTTTTTTATATGAA
TTATGAAGCatactttcttttataagaactagttAGTTTTATTCATtggg
cactttgagcctcagaTTGtttttatcctgttcttatttatagggtgaaa
TTGAAGTATTTTAGGATTTATACCcgcaatttttactactttgaccctaa
attgcttgaatttGAGTAATTCTAGgctcaggattgttcttaaaCTGCTC
TTAtcttttggcgattttgagtctcattgttcttataaaattgtttaaaa
aaacaaaaagtgtaGAGGTCTGAATGTCTGACTTATTGGAGCAAAgattt
cattgtatttttatcgataaatattttgtttcagCTTCATCAAGGTTTGA
TGATGTCATGTGTTGTTATTTTCTTCATCGCTTTCATTGTCATCTTGGTG
GAAAAACAAGGATGGGCTGTGAGTGTATTCCCTTTCCTTTTTCATACATT
CTTTCAAAAATTGGGATGAAGTTATTTGGCGAAAGTGTAAATGATCCATG
GTACCTCCTCCGGAAATCGGCaagattaattttgattttttgacatCGAT
TGTCACCTTGCCGAAATAGCGAGTTGTATGTATGCGTGTTTTTCTGTgac
ggagacggttagcttctgatttgtcttgatcctgactgactgaggacgct
TGTAAATCAGCATTTTTCGTTTTGGCACAGGTCAAAACGGCGTGTTATTC
AGTCACTCCACCGTCctaaaaagtgcaaatataccTAAACTCGCTTTAAA
CTCGTCCCGATATTAGTAATATGATAAATTAAACTCTACCAAAGGGAAAA
AGAGCAAAGGATTTGGAAGTTCTAGAATTAAAGaacataaaaaagtttga
atcGCACCTTACGATGGGAAACCTCACCCATGAACAAGTtaacaatttat
ttttctttgtttatagGAGAGTGCAGGAACTCATGGTATTCTGGGATTAA
TTGCTATCATTCTTGGCTTAATTCAGGTAACAACAGAGCTCTTTAATATC
AtgtacatttttttcaagtctTAACAGagtgtgtcacagacccactggga
cgcCAGCCCTActagaaaatttgacaaaaatttcgtccccggtgggaaaa
agcCCTCGAATTTCAggcccactgggaaattgacctTGATATcctcaatg
tttaaaaattgtactctaaAACCACCCCCTCTGGATTTTTGGACCTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgttaaat
gcataaccaggtaggtccataaaagtatcacttgtttaactttggaacaa
tagaatttccatccCCATCGGGAATTCAATAGGAATGtatatccccactg
aggaaaaaagttccagtggggctgtgagacaggggtgttataaaatttag
aattaataacattttaaaagaCTGGCTTATTTCTTCTTACCTAGGAcaag
accaaaacaacgtctagtctgtccatatcttctgacgactggacgaaATG
AAGATTAAACAATATGATATCAATTTTAatattatttcgtagaggtcgat
ggacctgtgaaatataattttctgattgtaataaataaattatttttatt
ttgcagCCGTTGATGGCCATGGTGCGACCAGCGCCGGATGCTGATAGGTA
ACAGAATAACTCCCTTTTTTCAATACAATGCAAATAGCTCTACCTGTGAT
TTGCGTCTCTGGTGTCGAGCACTAAGATAATCTGAAAGTAGTATGGGTTG
ATTGTAATGGTTTATTGACACAAAATTATTTACACCACATATCTTGTATA
ATTGGCGTTTCtcgatgaaaataattattttatttttgtatttttccatG
TCAggcgtttcattttcaattggTTTCATAGAAGTTTTGGAATGATTGCG
TGGTTATTAGCCGGTATACTTTTCGTTTTCTTCTGCTACTATACCTGGAG
AGAGTAGAGAATTCAAGTGTTGTTGTGTCTACCAAGCCTCGCTTTTTAct
gtgaaaaaaagaaaacacttctttaggcgtacaaactttcgctaACAGCA
ACTTTCGCGAGGttgaaaaatcgcgaaatttatgatattcactttcgcga
atttgacgaaaaaatctttttagcgagcataaacttttacGAATCAAGAT
ATAAAAGATTTCACACAAAAAgttttcacacaaaaatatGACTTgaaggg
acaaatacttcttgaacaGGATTGAAACGTTTGTCTTTTTGACTAATGAG
GCTttaacaggctaaaaagtgccataaatcttacattttattttaggcta
gaagttttattttctatttttgttaaaaagtttttgtgaacataaacttt
cgcgaatggcgcCTTCAACAATTTACTTCAagccatttactttcgcgaaa
aaaggTAAAGTTCGCAAAGATTGCGAAAGTTTCAAATGGTGTATGATTTG
AGAGCTTGGTAAAGTTTGAAAACTCACCAGGTTAAATCGTAGATAGATTT
CACTGACTTCACACTGGAGtagatttttgtttttacttacagtatataat
attttcaatttgtCTATTATAGGTTTAAGCATCATTTATGCTTTCTATGA
ACATTTACAAGAAAGTTACACAGAGATGTTGGTATTCATGATAGTGGTCG
TTGTTTTGTTCATTTTATTGGACATCGTTATTTGTGCTTCTTCGAAAAAT
TCTGCATCAGCTGATGGTAAGATTTCcctcttttctttttcgtttatTTG
TTTTCTCTGGTTTCCATCAAAAGCTAACTCAAAGCAAATTTATTGCTCCA
GTGTAGTTTTATTATGACTCCAGCAGTTTGCGTAAATGCGTGAGTGGGCA
AATGGGcgcgaatttttttaaatgaaaatccGATTTAGTGCAGTTTTCCC
CCAGTTTTAGAAGTTACTTTGgtttccccaattttttaagattttcttaa
aaatcgggtTTGCCTGGCTTTTGATAAAGTGCACAAAGCGTGAATCCTAT
TATTGCGATGGAAAAGTAAGGCTGATTATACATGTGTTACAATTGAATCC
TTATATTAACGCGTCTTTTATAGTGGCGTACAGCGGCACAAATAATATGG
TAGATGTcaaaccccggggggggcactcgatctgaaaacgaccatacgtt
cggcccaaaatttggcttctaaaatcggacccttacagtgcagtgaatta
cCANTTCTCTCACgggcgctgaatatttaattagtgtttacattatttga
ttgacagttttattataagtaagaaccgactagtttactagtctactaTA
CCTGGAGAGAGTTCAGAATTCAAGTGTTGTTGTGTCTACCAAGCCTCGCT
TGTTActgtgaaaaaaagaaaacacttctttaggcgtacaaactttcgct
aACAGCAACTTTCGCGAGGttgaaaaatcgcgaaatttatgACATtcact
ttcgcgaatttgacgaaaaaatctttttagcgagcataaacttttacGAA
TCAAGATATAAAAGATTNAAATTTATGACATtcactttcgcgaatttgac
gaaaaaatctttttagcgagcataaacttttacGAATCAAGAtataaaag
attaaaattttcacacaaaaatatGACTTgaagggacaaatacttcttga
acaGGATTGAAACGTTTGTCTTTTTGACTAATGAGGCTttaacaggctaa
aaagtgccataaatcttacattttattttaggctagaagttttattttct
atttttgttaaaaagtttttgtgaacataaactttcgcgaatggcgcCTT
CAACAATTTACTTCAagccatttactttcgcgaaaaaaggTAAAGTTCGC
AAAGATTGCGAAAGTTTCAAATGGTGTATGATTTGAGAGCTTGGTAAAGT
TTGAAAACTCACCAGGTTAAATCGTAGATAGATTTCACTGACTTCACACT
GgagcagatttttgtttttacttacagtatataatattttcaatttgtCT
ATTATAGGTTTAAGCATCATTTATGCTTTCTATGAACATTTGCAAGAAAG
TTACACAGAGATGTTGGTATTCATGATAGTGGTCGTTGTTTTGTTCATTT
TATTGGACATCGTTCTTTGTGCTTCNAGATGTTGGTATTCATGATAGTGG
TCGTTGTTTTGTTCATTTTATTGGACATCGTTATTTGTGCTTCTTCGAAA
AATTCTGCATCAGCTGATGGTAAGATTTCcctcttttctttttcgtttat
TTGTTTTCTCTGGTTTCCATCAAAAGCTAACTCAAAGCAAATTTATTGCT
CCAGTGTAGTTTTATTATGACTCCAGCATTTTGCGTAAATGCGTGAGTGG
GCAAATGGGcgcgaatttttttaaatgaaaatccGATTTAGTGCagtttt
ccccgatttttagAAGTTTCTTTGgtttccccaattttttaagattttct
taaaaatcgggtTTGCCTGGCTTTTGATAAAGTGCGCAAAGCGTGAATCC
TATCGTTGCGATGGAAAAGTAAGGCTGATTATACATGTGTAATTGAATCC
TTATATTAACGCGTTTTTTATAGTGGCGTACAGCGGCACAAATAATATGG
TAGATGTCAAACACACTTCGTCAAATAGCGTAAGTAAAGTTCTGAggggg
gttgtaggggttcgaaatatcgttttcccgtcaaaattttggctgaatcc
CAGattcccgaaaattgaaaaaaatgataacaccgtcacaccggtttgta
gaaGTCAAAATACCGGAATATTGACAAGAAATAATGCTAATCACCGT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00040266TCONS_00040266Clytia hemisphaericatranscript
TCONS_00040267TCONS_00040267Clytia hemisphaericatranscript
TCONS_00040268TCONS_00040268Clytia hemisphaericatranscript
TCONS_00040269TCONS_00040269Clytia hemisphaericatranscript
TCONS_00040270TCONS_00040270Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00040270-proteinTCONS_00040270-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002370supercontigsc0002370:9254..15650 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04	1.18	1.56	1.22	31.62	25.9	24.51	29.55	20.25	23.08	14.12	14.74	26.16	24.81	11.26	12.43	27.27	24.11	28.32	27.95	15.14	16.82	8.04	8.79	19.4	20.45	19.23	14.06	13.89	13.53