TCONS_00040270 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040270
Unique NameTCONS_00040270
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length926

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040270 ID=TCONS_00040270|Name=TCONS_00040270|organism=Clytia hemisphaerica|type=transcript|length=926bp
CGAAAGTTTTTGCACCAGTAAACCAAATGTTTTCTTCTCGACTAACAATG
CTTTGTATTTTACAATTTACAGGCAATAGAATAAGTCGACATGGACTTGG
TGATTATGCAACAACTGCTGCTTTTGACTTGCTGAAAGCTTCTGGTGAAA
TTATCACCACTACTGGACGAATGCTGCAAGACAAAGAAGTAGCTCACGGT
ATCCTTATGGTAGTTGCGTGGATAATTTGTTCAACTATCGGCATTTTCAT
GGCTCGTTACATGAAGCAAGCtactaaagaaaagaaaatcaccGGTAAAC
CGGCTTGGTTCCCTCTTCATCAAGGTTTGATGATGTCATGTGTTGTTATT
TTCTTCATCGCTTTCATTGTCATCTTGGTGGAAAAACAAGGATGGGCTGA
GAGTGCAGGAACTCATGGTATTCTGGGATTAATTGCTATCATTCTTGGCT
TAATTCAGCCGTTGATGGCCATGGTGCGACCAGCGCCGGATGCTGATAGg
cgtttcattttcaattggTTTCATAGAAGTTTTGGAATGATTGCGTGGTT
ATTAGCCGGTTTAAGCATCATTTATGCTTTCTATGAACATTTGCAAGAAA
GTTACACAGAGATGTTGGTATTCATGATAGTGGTCGTTGTTTTGTTCATT
TTATTGGACATCGTTATTTGTGCTTCTTCGAAAAATTCTGCATCAGCTGA
TGTGGCGTACAGCGGCACAAATAATATGGTAGATGTCAAACACACTTCGT
CAAATAGCGTAAGTAAAGTTCTGAggggggttgtaggggttcgaaatatc
gttttcccgtcaaaattttggctgaatccCAGattcccgaaaattgaaaa
aaatgataacaccgtcacaccggtttgtagaaGTCAAAATACCGGAATAT
TGACAAGAAATAATGCTAATCACCGT
Run BLAST on NCBI

protein sequence of TCONS_00040270-protein

>TCONS_00040270-protein ID=TCONS_00040270-protein|Name=TCONS_00040270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
KVFAPVNQMFSSRLTMLCILQFTGNRISRHGLGDYATTAAFDLLKASGEI
ITTTGRMLQDKEVAHGILMVVAWIICSTIGIFMARYMKQATKEKKITGKP
AWFPLHQGLMMSCVVIFFIAFIVILVEKQGWAESAGTHGILGLIAIILGL
IQPLMAMVRPAPDADRRFIFNWFHRSFGMIAWLLAGLSIIYAFYEHLQES
YTEMLVFMIVVVVLFILLDIVICASSKNSASADVAYSGTNNMVDVKHTSS
NSVSKVLRGVVGVRNIVFPSKFWLNPRFPKIEKNDNTVTPVCRSQNTGIL
TRNNANHR
Run BLAST on NCBI

transcript from alignment at sc0002370:9254..15650+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040270 ID=TCONS_00040270|Name=TCONS_00040270|organism=Clytia hemisphaerica|type=transcript|length=6397bp|location=Sequence derived from alignment at sc0002370:9254..15650+ (Clytia hemisphaerica)
CGAAAGTTTTTGCACCAGTAAACCAAATGTTTTCTTCTCGACTAACAATG
CTTTGTATTTTACAATTTACAGGCAATAGAATAAGTCGACATGGACTTGG
TGATTATGCAACAACTGCTGCTTTTGACTTGCTGAAAGCTTCTGGTGAAA
TTATCACCACTACTGGACGAATGCTGCAAGACAAAGAAGTAGCTCACGGT
ATAGTGCGGggaatatgatacaaaatataCACCAGTATTCAGTATTTATC
TTTTGAAATCAGTAAAAAACAACTGCGCGAACTTACCGTCagggaaattt
tgaaagtaaCTTTTATCGTTCGTTGTACATTTTCCATCCGTAACTTTTGA
GTGAGAGGGCAAGGTAGATCTTTCGCCTTAACTTTCGTTTGCTTCAGTTT
GCTTTCAATTatcaatttgtttgataaaagtcCAGAGCTTGAAAGTTATT
TAATATTGGATCAATAAAATTCGATGGACAAAAATCCGAAGGATTTCGTA
ACAGGATCAAAATGACGTATACAGGTCTGGTTTTGGCAGCCGTAACTGTA
ACAAATATTTCTATTCTTTATTCTATTCTTTACAAGGTATCCTTATGGTA
GTTGCGTGGATAATTTGTTCAACTATCGGCATTTTCATGGCTCGTTACAT
GAAGCAAGCtactaaagaaaagaaaatcaccGGTAAACCGGCTTGGTTCC
CTGTGAGTGATTTTTAAGCGTTTGAAACGGGGGAGGGGTTAAGCTTAAAG
CTGTAATGTCCACATTGTTTACAGTTGTGTCCAGTAGTACTTACAATACA
CAGTAGACGTCTGTCTGCTCACGCTCGAACAAAGAAGTTTTTTATATGAA
TTATGAAGCatactttcttttataagaactagttAGTTTTATTCATtggg
cactttgagcctcagaTTGtttttatcctgttcttatttatagggtgaaa
TTGAAGTATTTTAGGATTTATACCcgcaatttttactactttgaccctaa
attgcttgaatttGAGTAATTCTAGgctcaggattgttcttaaaCTGCTC
TTAtcttttggcgattttgagtctcattgttcttataaaattgtttaaaa
aaacaaaaagtgtaGAGGTCTGAATGTCTGACTTATTGGAGCAAAgattt
cattgtatttttatcgataaatattttgtttcagCTTCATCAAGGTTTGA
TGATGTCATGTGTTGTTATTTTCTTCATCGCTTTCATTGTCATCTTGGTG
GAAAAACAAGGATGGGCTGTGAGTGTATTCCCTTTCCTTTTTCATACATT
CTTTCAAAAATTGGGATGAAGTTATTTGGCGAAAGTGTAAATGATCCATG
GTACCTCCTCCGGAAATCGGCaagattaattttgattttttgacatCGAT
TGTCACCTTGCCGAAATAGCGAGTTGTATGTATGCGTGTTTTTCTGTgac
ggagacggttagcttctgatttgtcttgatcctgactgactgaggacgct
TGTAAATCAGCATTTTTCGTTTTGGCACAGGTCAAAACGGCGTGTTATTC
AGTCACTCCACCGTCctaaaaagtgcaaatataccTAAACTCGCTTTAAA
CTCGTCCCGATATTAGTAATATGATAAATTAAACTCTACCAAAGGGAAAA
AGAGCAAAGGATTTGGAAGTTCTAGAATTAAAGaacataaaaaagtttga
atcGCACCTTACGATGGGAAACCTCACCCATGAACAAGTtaacaatttat
ttttctttgtttatagGAGAGTGCAGGAACTCATGGTATTCTGGGATTAA
TTGCTATCATTCTTGGCTTAATTCAGGTAACAACAGAGCTCTTTAATATC
AtgtacatttttttcaagtctTAACAGagtgtgtcacagacccactggga
cgcCAGCCCTActagaaaatttgacaaaaatttcgtccccggtgggaaaa
agcCCTCGAATTTCAggcccactgggaaattgacctTGATATcctcaatg
tttaaaaattgtactctaaAACCACCCCCTCTGGATTTTTGGACCTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgttaaat
gcataaccaggtaggtccataaaagtatcacttgtttaactttggaacaa
tagaatttccatccCCATCGGGAATTCAATAGGAATGtatatccccactg
aggaaaaaagttccagtggggctgtgagacaggggtgttataaaatttag
aattaataacattttaaaagaCTGGCTTATTTCTTCTTACCTAGGAcaag
accaaaacaacgtctagtctgtccatatcttctgacgactggacgaaATG
AAGATTAAACAATATGATATCAATTTTAatattatttcgtagaggtcgat
ggacctgtgaaatataattttctgattgtaataaataaattatttttatt
ttgcagCCGTTGATGGCCATGGTGCGACCAGCGCCGGATGCTGATAGGTA
ACAGAATAACTCCCTTTTTTCAATACAATGCAAATAGCTCTACCTGTGAT
TTGCGTCTCTGGTGTCGAGCACTAAGATAATCTGAAAGTAGTATGGGTTG
ATTGTAATGGTTTATTGACACAAAATTATTTACACCACATATCTTGTATA
ATTGGCGTTTCtcgatgaaaataattattttatttttgtatttttccatG
TCAggcgtttcattttcaattggTTTCATAGAAGTTTTGGAATGATTGCG
TGGTTATTAGCCGGTATACTTTTCGTTTTCTTCTGCTACTATACCTGGAG
AGAGTAGAGAATTCAAGTGTTGTTGTGTCTACCAAGCCTCGCTTTTTAct
gtgaaaaaaagaaaacacttctttaggcgtacaaactttcgctaACAGCA
ACTTTCGCGAGGttgaaaaatcgcgaaatttatgatattcactttcgcga
atttgacgaaaaaatctttttagcgagcataaacttttacGAATCAAGAT
ATAAAAGATTTCACACAAAAAgttttcacacaaaaatatGACTTgaaggg
acaaatacttcttgaacaGGATTGAAACGTTTGTCTTTTTGACTAATGAG
GCTttaacaggctaaaaagtgccataaatcttacattttattttaggcta
gaagttttattttctatttttgttaaaaagtttttgtgaacataaacttt
cgcgaatggcgcCTTCAACAATTTACTTCAagccatttactttcgcgaaa
aaaggTAAAGTTCGCAAAGATTGCGAAAGTTTCAAATGGTGTATGATTTG
AGAGCTTGGTAAAGTTTGAAAACTCACCAGGTTAAATCGTAGATAGATTT
CACTGACTTCACACTGGAGtagatttttgtttttacttacagtatataat
attttcaatttgtCTATTATAGGTTTAAGCATCATTTATGCTTTCTATGA
ACATTTACAAGAAAGTTACACAGAGATGTTGGTATTCATGATAGTGGTCG
TTGTTTTGTTCATTTTATTGGACATCGTTATTTGTGCTTCTTCGAAAAAT
TCTGCATCAGCTGATGGTAAGATTTCcctcttttctttttcgtttatTTG
TTTTCTCTGGTTTCCATCAAAAGCTAACTCAAAGCAAATTTATTGCTCCA
GTGTAGTTTTATTATGACTCCAGCAGTTTGCGTAAATGCGTGAGTGGGCA
AATGGGcgcgaatttttttaaatgaaaatccGATTTAGTGCAGTTTTCCC
CCAGTTTTAGAAGTTACTTTGgtttccccaattttttaagattttcttaa
aaatcgggtTTGCCTGGCTTTTGATAAAGTGCACAAAGCGTGAATCCTAT
TATTGCGATGGAAAAGTAAGGCTGATTATACATGTGTTACAATTGAATCC
TTATATTAACGCGTCTTTTATAGTGGCGTACAGCGGCACAAATAATATGG
TAGATGTcaaaccccggggggggcactcgatctgaaaacgaccatacgtt
cggcccaaaatttggcttctaaaatcggacccttacagtgcagtgaatta
cCANTTCTCTCACgggcgctgaatatttaattagtgtttacattatttga
ttgacagttttattataagtaagaaccgactagtttactagtctactaTA
CCTGGAGAGAGTTCAGAATTCAAGTGTTGTTGTGTCTACCAAGCCTCGCT
TGTTActgtgaaaaaaagaaaacacttctttaggcgtacaaactttcgct
aACAGCAACTTTCGCGAGGttgaaaaatcgcgaaatttatgACATtcact
ttcgcgaatttgacgaaaaaatctttttagcgagcataaacttttacGAA
TCAAGATATAAAAGATTNAAATTTATGACATtcactttcgcgaatttgac
gaaaaaatctttttagcgagcataaacttttacGAATCAAGAtataaaag
attaaaattttcacacaaaaatatGACTTgaagggacaaatacttcttga
acaGGATTGAAACGTTTGTCTTTTTGACTAATGAGGCTttaacaggctaa
aaagtgccataaatcttacattttattttaggctagaagttttattttct
atttttgttaaaaagtttttgtgaacataaactttcgcgaatggcgcCTT
CAACAATTTACTTCAagccatttactttcgcgaaaaaaggTAAAGTTCGC
AAAGATTGCGAAAGTTTCAAATGGTGTATGATTTGAGAGCTTGGTAAAGT
TTGAAAACTCACCAGGTTAAATCGTAGATAGATTTCACTGACTTCACACT
GgagcagatttttgtttttacttacagtatataatattttcaatttgtCT
ATTATAGGTTTAAGCATCATTTATGCTTTCTATGAACATTTGCAAGAAAG
TTACACAGAGATGTTGGTATTCATGATAGTGGTCGTTGTTTTGTTCATTT
TATTGGACATCGTTCTTTGTGCTTCNAGATGTTGGTATTCATGATAGTGG
TCGTTGTTTTGTTCATTTTATTGGACATCGTTATTTGTGCTTCTTCGAAA
AATTCTGCATCAGCTGATGGTAAGATTTCcctcttttctttttcgtttat
TTGTTTTCTCTGGTTTCCATCAAAAGCTAACTCAAAGCAAATTTATTGCT
CCAGTGTAGTTTTATTATGACTCCAGCATTTTGCGTAAATGCGTGAGTGG
GCAAATGGGcgcgaatttttttaaatgaaaatccGATTTAGTGCagtttt
ccccgatttttagAAGTTTCTTTGgtttccccaattttttaagattttct
taaaaatcgggtTTGCCTGGCTTTTGATAAAGTGCGCAAAGCGTGAATCC
TATCGTTGCGATGGAAAAGTAAGGCTGATTATACATGTGTAATTGAATCC
TTATATTAACGCGTTTTTTATAGTGGCGTACAGCGGCACAAATAATATGG
TAGATGTCAAACACACTTCGTCAAATAGCGTAAGTAAAGTTCTGAggggg
gttgtaggggttcgaaatatcgttttcccgtcaaaattttggctgaatcc
CAGattcccgaaaattgaaaaaaatgataacaccgtcacaccggtttgta
gaaGTCAAAATACCGGAATATTGACAAGAAATAATGCTAATCACCGT

Coding sequence (CDS) from alignment at sc0002370:9254..15650+

>TCONS_00040270 ID=TCONS_00040270|Name=TCONS_00040270|organism=Clytia hemisphaerica|type=CDS|length=9240bp|location=Sequence derived from alignment at sc0002370:9254..15650+ (Clytia hemisphaerica)
AAAGTTTTTGCACCAGTAAACCAAATGTTTTCTTCTCGACTAACAATGCT
TTGTATTTTACAATTTACAGGCAATAGAATAAGTCGACATGGACTTGGTG
ATTATGCAACAACTGCTGCTTTTGACTTGCTGAAAGCTTCTGGTGAAATT
ATCACCACTACTGGACGAATGCTGCAAGACAAAGAAGTAGCTCACGGTAT
CCTTATGGTAGTTGCGTGGATAATTTGTTCAACTATCGGCATTTTCATGG
CTCGTTACATGAAGCAAGCtactaaagaaaagaaaatcaccGGTAAACCG
GCTTGGTTCCCTCTTCATCAAGGTTTGATGATGTCATGTGTTGTTATTTT
CTTCATCGCTTTCATTGTCATCTTGGTGGAAAAACAAGGATGGGCTGAGA
GTGCAGGAACTCATGGTATTCTGGGATTAATTGCTATCATTCTTGGCTTA
ATTCAGCCGTTGATGGCCATGGTGCGACCAGCGCCGGATGCTGATAGgcg
tttcattttcaattggTTTCATAGAAGTTTTGGAATGATTGCGTGGTTAT
TAGCCGGTTTAAGCATCATTTATGCTTTCTATGAACATTTGCAAGAAAGT
TACACAGAGATGTTGGTATTCATGATAGTGGTCGTTGTTTTGTTCATTTT
ATTGGACATCGTTATTTGTGCTTCTTCGAAAAATTCTGCATCAGCTGATG
TGGCGTACAGCGGCACAAATAATATGGTAGATGTCAAACACACTTCGTCA
AATAGCGTAAGTAAAGTTCTGAggggggttgtaggggttcgaaatatcgt
tttcccgtcaaaattttggctgaatccCAGattcccgaaaattgaaaaaa
atgataacaccgtcacaccggtttgtagaaGTCAAAATACCGGAATATTG
ACAAGAAATAATGCTAATCACCGTAAAGTTTTTGCACCAGTAAACCAAAT
GTTTTCTTCTCGACTAACAATGCTTTGTATTTTACAATTTACAGGCAATA
GAATAAGTCGACATGGACTTGGTGATTATGCAACAACTGCTGCTTTTGAC
TTGCTGAAAGCTTCTGGTGAAATTATCACCACTACTGGACGAATGCTGCA
AGACAAAGAAGTAGCTCACGGTATCCTTATGGTAGTTGCGTGGATAATTT
GTTCAACTATCGGCATTTTCATGGCTCGTTACATGAAGCAAGCtactaaa
gaaaagaaaatcaccGGTAAACCGGCTTGGTTCCCTCTTCATCAAGGTTT
GATGATGTCATGTGTTGTTATTTTCTTCATCGCTTTCATTGTCATCTTGG
TGGAAAAACAAGGATGGGCTGAGAGTGCAGGAACTCATGGTATTCTGGGA
TTAATTGCTATCATTCTTGGCTTAATTCAGCCGTTGATGGCCATGGTGCG
ACCAGCGCCGGATGCTGATAGgcgtttcattttcaattggTTTCATAGAA
GTTTTGGAATGATTGCGTGGTTATTAGCCGGTTTAAGCATCATTTATGCT
TTCTATGAACATTTGCAAGAAAGTTACACAGAGATGTTGGTATTCATGAT
AGTGGTCGTTGTTTTGTTCATTTTATTGGACATCGTTATTTGTGCTTCTT
CGAAAAATTCTGCATCAGCTGATGTGGCGTACAGCGGCACAAATAATATG
GTAGATGTCAAACACACTTCGTCAAATAGCGTAAGTAAAGTTCTGAgggg
ggttgtaggggttcgaaatatcgttttcccgtcaaaattttggctgaatc
cCAGattcccgaaaattgaaaaaaatgataacaccgtcacaccggtttgt
agaaGTCAAAATACCGGAATATTGACAAGAAATAATGCTAATCACCGTAA
AGTTTTTGCACCAGTAAACCAAATGTTTTCTTCTCGACTAACAATGCTTT
GTATTTTACAATTTACAGGCAATAGAATAAGTCGACATGGACTTGGTGAT
TATGCAACAACTGCTGCTTTTGACTTGCTGAAAGCTTCTGGTGAAATTAT
CACCACTACTGGACGAATGCTGCAAGACAAAGAAGTAGCTCACGGTATCC
TTATGGTAGTTGCGTGGATAATTTGTTCAACTATCGGCATTTTCATGGCT
CGTTACATGAAGCAAGCtactaaagaaaagaaaatcaccGGTAAACCGGC
TTGGTTCCCTCTTCATCAAGGTTTGATGATGTCATGTGTTGTTATTTTCT
TCATCGCTTTCATTGTCATCTTGGTGGAAAAACAAGGATGGGCTGAGAGT
GCAGGAACTCATGGTATTCTGGGATTAATTGCTATCATTCTTGGCTTAAT
TCAGCCGTTGATGGCCATGGTGCGACCAGCGCCGGATGCTGATAGgcgtt
tcattttcaattggTTTCATAGAAGTTTTGGAATGATTGCGTGGTTATTA
GCCGGTTTAAGCATCATTTATGCTTTCTATGAACATTTGCAAGAAAGTTA
CACAGAGATGTTGGTATTCATGATAGTGGTCGTTGTTTTGTTCATTTTAT
TGGACATCGTTATTTGTGCTTCTTCGAAAAATTCTGCATCAGCTGATGTG
GCGTACAGCGGCACAAATAATATGGTAGATGTCAAACACACTTCGTCAAA
TAGCGTAAGTAAAGTTCTGAggggggttgtaggggttcgaaatatcgttt
tcccgtcaaaattttggctgaatccCAGattcccgaaaattgaaaaaaat
gataacaccgtcacaccggtttgtagaaGTCAAAATACCGGAATATTGAC
AAGAAATAATGCTAATCACCGTAAAGTTTTTGCACCAGTAAACCAAATGT
TTTCTTCTCGACTAACAATGCTTTGTATTTTACAATTTACAGGCAATAGA
ATAAGTCGACATGGACTTGGTGATTATGCAACAACTGCTGCTTTTGACTT
GCTGAAAGCTTCTGGTGAAATTATCACCACTACTGGACGAATGCTGCAAG
ACAAAGAAGTAGCTCACGGTATCCTTATGGTAGTTGCGTGGATAATTTGT
TCAACTATCGGCATTTTCATGGCTCGTTACATGAAGCAAGCtactaaaga
aaagaaaatcaccGGTAAACCGGCTTGGTTCCCTCTTCATCAAGGTTTGA
TGATGTCATGTGTTGTTATTTTCTTCATCGCTTTCATTGTCATCTTGGTG
GAAAAACAAGGATGGGCTGAGAGTGCAGGAACTCATGGTATTCTGGGATT
AATTGCTATCATTCTTGGCTTAATTCAGCCGTTGATGGCCATGGTGCGAC
CAGCGCCGGATGCTGATAGgcgtttcattttcaattggTTTCATAGAAGT
TTTGGAATGATTGCGTGGTTATTAGCCGGTTTAAGCATCATTTATGCTTT
CTATGAACATTTGCAAGAAAGTTACACAGAGATGTTGGTATTCATGATAG
TGGTCGTTGTTTTGTTCATTTTATTGGACATCGTTATTTGTGCTTCTTCG
AAAAATTCTGCATCAGCTGATGTGGCGTACAGCGGCACAAATAATATGGT
AGATGTCAAACACACTTCGTCAAATAGCGTAAGTAAAGTTCTGAgggggg
ttgtaggggttcgaaatatcgttttcccgtcaaaattttggctgaatccC
AGattcccgaaaattgaaaaaaatgataacaccgtcacaccggtttgtag
aaGTCAAAATACCGGAATATTGACAAGAAATAATGCTAATCACCGTAAAG
TTTTTGCACCAGTAAACCAAATGTTTTCTTCTCGACTAACAATGCTTTGT
ATTTTACAATTTACAGGCAATAGAATAAGTCGACATGGACTTGGTGATTA
TGCAACAACTGCTGCTTTTGACTTGCTGAAAGCTTCTGGTGAAATTATCA
CCACTACTGGACGAATGCTGCAAGACAAAGAAGTAGCTCACGGTATCCTT
ATGGTAGTTGCGTGGATAATTTGTTCAACTATCGGCATTTTCATGGCTCG
TTACATGAAGCAAGCtactaaagaaaagaaaatcaccGGTAAACCGGCTT
GGTTCCCTCTTCATCAAGGTTTGATGATGTCATGTGTTGTTATTTTCTTC
ATCGCTTTCATTGTCATCTTGGTGGAAAAACAAGGATGGGCTGAGAGTGC
AGGAACTCATGGTATTCTGGGATTAATTGCTATCATTCTTGGCTTAATTC
AGCCGTTGATGGCCATGGTGCGACCAGCGCCGGATGCTGATAGgcgtttc
attttcaattggTTTCATAGAAGTTTTGGAATGATTGCGTGGTTATTAGC
CGGTTTAAGCATCATTTATGCTTTCTATGAACATTTGCAAGAAAGTTACA
CAGAGATGTTGGTATTCATGATAGTGGTCGTTGTTTTGTTCATTTTATTG
GACATCGTTATTTGTGCTTCTTCGAAAAATTCTGCATCAGCTGATGTGGC
GTACAGCGGCACAAATAATATGGTAGATGTCAAACACACTTCGTCAAATA
GCGTAAGTAAAGTTCTGAggggggttgtaggggttcgaaatatcgttttc
ccgtcaaaattttggctgaatccCAGattcccgaaaattgaaaaaaatga
taacaccgtcacaccggtttgtagaaGTCAAAATACCGGAATATTGACAA
GAAATAATGCTAATCACCGTAAAGTTTTTGCACCAGTAAACCAAATGTTT
TCTTCTCGACTAACAATGCTTTGTATTTTACAATTTACAGGCAATAGAAT
AAGTCGACATGGACTTGGTGATTATGCAACAACTGCTGCTTTTGACTTGC
TGAAAGCTTCTGGTGAAATTATCACCACTACTGGACGAATGCTGCAAGAC
AAAGAAGTAGCTCACGGTATCCTTATGGTAGTTGCGTGGATAATTTGTTC
AACTATCGGCATTTTCATGGCTCGTTACATGAAGCAAGCtactaaagaaa
agaaaatcaccGGTAAACCGGCTTGGTTCCCTCTTCATCAAGGTTTGATG
ATGTCATGTGTTGTTATTTTCTTCATCGCTTTCATTGTCATCTTGGTGGA
AAAACAAGGATGGGCTGAGAGTGCAGGAACTCATGGTATTCTGGGATTAA
TTGCTATCATTCTTGGCTTAATTCAGCCGTTGATGGCCATGGTGCGACCA
GCGCCGGATGCTGATAGgcgtttcattttcaattggTTTCATAGAAGTTT
TGGAATGATTGCGTGGTTATTAGCCGGTTTAAGCATCATTTATGCTTTCT
ATGAACATTTGCAAGAAAGTTACACAGAGATGTTGGTATTCATGATAGTG
GTCGTTGTTTTGTTCATTTTATTGGACATCGTTATTTGTGCTTCTTCGAA
AAATTCTGCATCAGCTGATGTGGCGTACAGCGGCACAAATAATATGGTAG
ATGTCAAACACACTTCGTCAAATAGCGTAAGTAAAGTTCTGAggggggtt
gtaggggttcgaaatatcgttttcccgtcaaaattttggctgaatccCAG
attcccgaaaattgaaaaaaatgataacaccgtcacaccggtttgtagaa
GTCAAAATACCGGAATATTGACAAGAAATAATGCTAATCACCGTAAAGTT
TTTGCACCAGTAAACCAAATGTTTTCTTCTCGACTAACAATGCTTTGTAT
TTTACAATTTACAGGCAATAGAATAAGTCGACATGGACTTGGTGATTATG
CAACAACTGCTGCTTTTGACTTGCTGAAAGCTTCTGGTGAAATTATCACC
ACTACTGGACGAATGCTGCAAGACAAAGAAGTAGCTCACGGTATCCTTAT
GGTAGTTGCGTGGATAATTTGTTCAACTATCGGCATTTTCATGGCTCGTT
ACATGAAGCAAGCtactaaagaaaagaaaatcaccGGTAAACCGGCTTGG
TTCCCTCTTCATCAAGGTTTGATGATGTCATGTGTTGTTATTTTCTTCAT
CGCTTTCATTGTCATCTTGGTGGAAAAACAAGGATGGGCTGAGAGTGCAG
GAACTCATGGTATTCTGGGATTAATTGCTATCATTCTTGGCTTAATTCAG
CCGTTGATGGCCATGGTGCGACCAGCGCCGGATGCTGATAGgcgtttcat
tttcaattggTTTCATAGAAGTTTTGGAATGATTGCGTGGTTATTAGCCG
GTTTAAGCATCATTTATGCTTTCTATGAACATTTGCAAGAAAGTTACACA
GAGATGTTGGTATTCATGATAGTGGTCGTTGTTTTGTTCATTTTATTGGA
CATCGTTATTTGTGCTTCTTCGAAAAATTCTGCATCAGCTGATGTGGCGT
ACAGCGGCACAAATAATATGGTAGATGTCAAACACACTTCGTCAAATAGC
GTAAGTAAAGTTCTGAggggggttgtaggggttcgaaatatcgttttccc
gtcaaaattttggctgaatccCAGattcccgaaaattgaaaaaaatgata
acaccgtcacaccggtttgtagaaGTCAAAATACCGGAATATTGACAAGA
AATAATGCTAATCACCGTAAAGTTTTTGCACCAGTAAACCAAATGTTTTC
TTCTCGACTAACAATGCTTTGTATTTTACAATTTACAGGCAATAGAATAA
GTCGACATGGACTTGGTGATTATGCAACAACTGCTGCTTTTGACTTGCTG
AAAGCTTCTGGTGAAATTATCACCACTACTGGACGAATGCTGCAAGACAA
AGAAGTAGCTCACGGTATCCTTATGGTAGTTGCGTGGATAATTTGTTCAA
CTATCGGCATTTTCATGGCTCGTTACATGAAGCAAGCtactaaagaaaag
aaaatcaccGGTAAACCGGCTTGGTTCCCTCTTCATCAAGGTTTGATGAT
GTCATGTGTTGTTATTTTCTTCATCGCTTTCATTGTCATCTTGGTGGAAA
AACAAGGATGGGCTGAGAGTGCAGGAACTCATGGTATTCTGGGATTAATT
GCTATCATTCTTGGCTTAATTCAGCCGTTGATGGCCATGGTGCGACCAGC
GCCGGATGCTGATAGgcgtttcattttcaattggTTTCATAGAAGTTTTG
GAATGATTGCGTGGTTATTAGCCGGTTTAAGCATCATTTATGCTTTCTAT
GAACATTTGCAAGAAAGTTACACAGAGATGTTGGTATTCATGATAGTGGT
CGTTGTTTTGTTCATTTTATTGGACATCGTTATTTGTGCTTCTTCGAAAA
ATTCTGCATCAGCTGATGTGGCGTACAGCGGCACAAATAATATGGTAGAT
GTCAAACACACTTCGTCAAATAGCGTAAGTAAAGTTCTGAggggggttgt
aggggttcgaaatatcgttttcccgtcaaaattttggctgaatccCAGat
tcccgaaaattgaaaaaaatgataacaccgtcacaccggtttgtagaaGT
CAAAATACCGGAATATTGACAAGAAATAATGCTAATCACCGTAAAGTTTT
TGCACCAGTAAACCAAATGTTTTCTTCTCGACTAACAATGCTTTGTATTT
TACAATTTACAGGCAATAGAATAAGTCGACATGGACTTGGTGATTATGCA
ACAACTGCTGCTTTTGACTTGCTGAAAGCTTCTGGTGAAATTATCACCAC
TACTGGACGAATGCTGCAAGACAAAGAAGTAGCTCACGGTATCCTTATGG
TAGTTGCGTGGATAATTTGTTCAACTATCGGCATTTTCATGGCTCGTTAC
ATGAAGCAAGCtactaaagaaaagaaaatcaccGGTAAACCGGCTTGGTT
CCCTCTTCATCAAGGTTTGATGATGTCATGTGTTGTTATTTTCTTCATCG
CTTTCATTGTCATCTTGGTGGAAAAACAAGGATGGGCTGAGAGTGCAGGA
ACTCATGGTATTCTGGGATTAATTGCTATCATTCTTGGCTTAATTCAGCC
GTTGATGGCCATGGTGCGACCAGCGCCGGATGCTGATAGgcgtttcattt
tcaattggTTTCATAGAAGTTTTGGAATGATTGCGTGGTTATTAGCCGGT
TTAAGCATCATTTATGCTTTCTATGAACATTTGCAAGAAAGTTACACAGA
GATGTTGGTATTCATGATAGTGGTCGTTGTTTTGTTCATTTTATTGGACA
TCGTTATTTGTGCTTCTTCGAAAAATTCTGCATCAGCTGATGTGGCGTAC
AGCGGCACAAATAATATGGTAGATGTCAAACACACTTCGTCAAATAGCGT
AAGTAAAGTTCTGAggggggttgtaggggttcgaaatatcgttttcccgt
caaaattttggctgaatccCAGattcccgaaaattgaaaaaaatgataac
accgtcacaccggtttgtagaaGTCAAAATACCGGAATATTGACAAGAAA
TAATGCTAATCACCGTAAAGTTTTTGCACCAGTAAACCAAATGTTTTCTT
CTCGACTAACAATGCTTTGTATTTTACAATTTACAGGCAATAGAATAAGT
CGACATGGACTTGGTGATTATGCAACAACTGCTGCTTTTGACTTGCTGAA
AGCTTCTGGTGAAATTATCACCACTACTGGACGAATGCTGCAAGACAAAG
AAGTAGCTCACGGTATCCTTATGGTAGTTGCGTGGATAATTTGTTCAACT
ATCGGCATTTTCATGGCTCGTTACATGAAGCAAGCtactaaagaaaagaa
aatcaccGGTAAACCGGCTTGGTTCCCTCTTCATCAAGGTTTGATGATGT
CATGTGTTGTTATTTTCTTCATCGCTTTCATTGTCATCTTGGTGGAAAAA
CAAGGATGGGCTGAGAGTGCAGGAACTCATGGTATTCTGGGATTAATTGC
TATCATTCTTGGCTTAATTCAGCCGTTGATGGCCATGGTGCGACCAGCGC
CGGATGCTGATAGgcgtttcattttcaattggTTTCATAGAAGTTTTGGA
ATGATTGCGTGGTTATTAGCCGGTTTAAGCATCATTTATGCTTTCTATGA
ACATTTGCAAGAAAGTTACACAGAGATGTTGGTATTCATGATAGTGGTCG
TTGTTTTGTTCATTTTATTGGACATCGTTATTTGTGCTTCTTCGAAAAAT
TCTGCATCAGCTGATGTGGCGTACAGCGGCACAAATAATATGGTAGATGT
CAAACACACTTCGTCAAATAGCGTAAGTAAAGTTCTGAggggggttgtag
gggttcgaaatatcgttttcccgtcaaaattttggctgaatccCAGattc
ccgaaaattgaaaaaaatgataacaccgtcacaccggtttgtagaaGTCA
AAATACCGGAATATTGACAAGAAATAATGCTAATCACCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024441XLOC_024441Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040270-proteinTCONS_00040270-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040270-exon-sc0002370-1491911889:9254..9451TCONS_00040270-exon-sc0002370-1491911889:9254..9451Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1510915933:9254..9451TCONS_00040270-exon-sc0002370-1510915933:9254..9451Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1575043694:9254..9451TCONS_00040270-exon-sc0002370-1575043694:9254..9451Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1491911889:9840..9955TCONS_00040270-exon-sc0002370-1491911889:9840..9955Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1510915933:9840..9955TCONS_00040270-exon-sc0002370-1510915933:9840..9955Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1575043694:9840..9955TCONS_00040270-exon-sc0002370-1575043694:9840..9955Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1491911889:10438..10521TCONS_00040270-exon-sc0002370-1491911889:10438..10521Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1510915933:10438..10521TCONS_00040270-exon-sc0002370-1510915933:10438..10521Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1575043694:10438..10521TCONS_00040270-exon-sc0002370-1575043694:10438..10521Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1491911889:11020..11079TCONS_00040270-exon-sc0002370-1491911889:11020..11079Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1510915933:11020..11079TCONS_00040270-exon-sc0002370-1510915933:11020..11079Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1575043694:11020..11079TCONS_00040270-exon-sc0002370-1575043694:11020..11079Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1491911889:12460..12500TCONS_00040270-exon-sc0002370-1491911889:12460..12500Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1510915933:12460..12500TCONS_00040270-exon-sc0002370-1510915933:12460..12500Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1575043694:12460..12500TCONS_00040270-exon-sc0002370-1575043694:12460..12500Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1491911889:12708..12766TCONS_00040270-exon-sc0002370-1491911889:12708..12766Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1510915933:12708..12766TCONS_00040270-exon-sc0002370-1510915933:12708..12766Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1575043694:12708..12766TCONS_00040270-exon-sc0002370-1575043694:12708..12766Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1491911889:13426..13455TCONS_00040270-exon-sc0002370-1491911889:13426..13455Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1510915933:13426..13455TCONS_00040270-exon-sc0002370-1510915933:13426..13455Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1575043694:13426..13455TCONS_00040270-exon-sc0002370-1575043694:13426..13455Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1491911889:14891..14961TCONS_00040270-exon-sc0002370-1491911889:14891..14961Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1510915933:14891..14961TCONS_00040270-exon-sc0002370-1510915933:14891..14961Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1575043694:14891..14961TCONS_00040270-exon-sc0002370-1575043694:14891..14961Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1491911889:15030..15072TCONS_00040270-exon-sc0002370-1491911889:15030..15072Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1510915933:15030..15072TCONS_00040270-exon-sc0002370-1510915933:15030..15072Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1575043694:15030..15072TCONS_00040270-exon-sc0002370-1575043694:15030..15072Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1491911889:15427..15650TCONS_00040270-exon-sc0002370-1491911889:15427..15650Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1510915933:15427..15650TCONS_00040270-exon-sc0002370-1510915933:15427..15650Clytia hemisphaericaexon
TCONS_00040270-exon-sc0002370-1575043694:15427..15650TCONS_00040270-exon-sc0002370-1575043694:15427..15650Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002370supercontigsc0002370:9254..15650 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.190544	0	0.0916742	0.158714	7.272	4.9986	7.5671	7.51051	5.04833	6.77471	2.2275	3.30095	7.68244	6.51164	2.22086	2.01372	6.17572	6.09974	6.3334	6.0867	4.12699	4.58315	1.49507	2.64406	3.64084	5.00101	3.1957	3.43115	1.68811	2.55319
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006593Cyt_b561/ferric_Rdtase_TM
Blast
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BLAST of TCONS_00040270 vs. Swiss-Prot (Human)
Match: FRRS1 (Ferric-chelate reductase 1 OS=Homo sapiens GN=FRRS1 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.575e-16
Identity = 55/160 (34.38%), Postives = 86/160 (53.75%), Query Frame = 3 
Query:   78 RISRHGLGDYATTAAFDLLKASGEIITTTGRMLQDKEVAHGILMVVAWIICSTIGIFMARYMKQATKEKKITGKPAWFPLHQGLMMSCXXXXXXXXXXXXXEKQGWAESAGTHXXXXXXXXXXXXXQPLMAMVRPAPDADRRFIFNWFHRSFGMIAWLLA 557
            RI +H      T   +D+  +   I  +   +L      HG LM VAW+   +IG+ +AR+ K    +  + G+ AWF +H+ LM +  V+  IAF++  + + GW+  AG H  LG I + L ++QPL+A+ RP     RR +FNW H S G  A ++A
Sbjct:  337 RIYKHSQQPLITYEKYDVTDSPKNIGGSHSVLLLK---VHGALMFVAWMTTVSIGVLVARFFKPVWSKAFLLGEAAWFQVHRMLMFTTTVLTCIAFVMPFIYRGGWSRHAGYHPYLGCIVMTLAVLQPLLAVFRPPLHDPRRQMFNWTHWSMGTAARIIA 493
The following BLAST results are available for this feature:
BLAST of TCONS_00040270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FRRS11.575e-1634.38Ferric-chelate reductase 1 OS=Homo sapiens GN=FRRS... [more]
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