XLOC_009856 (mRNA) -

Overview
NameXLOC_009856
Unique NameXLOC_009856
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000023_pilon:803100..812489-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_009856 ID=XLOC_009856|Name=XLOC_009856|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=9390bp|location=Sequence derived from alignment at sc0000023_pilon:803100..812489- (Clytia hemisphaerica_ch_hm2_pilon)
CACGTTTTCATCTTTCCAAAAGTAGTTGGTAAGTATAAATTGTATTAAAG GGGTTACACACGAAACGAAAGTCTCGTGCTCGCAAGCGAAAGGTTTTTCA AACACTATCAACCAAAGCGAAAAGCACCAATCGCAAAAATTTGGAAAAGC CACTGTATTTTTGCTTTTGGATTGCTAGATTAGCTAGTTGGCTTAGGTTA GGGGGCTTGTGGATTGTTATAGGTAAGTACGGTACCGTAGGATGGTCAGA TGGTTAAAAACTCTCTCATTGTGGAAGAAAATTTCCGATTGCCAGTTTAC AACGGAAAAAGACCAAAACTTATGAACTAACCCCAAAAAACGCTACAAAA GTAGATTTAGCTTGTTAAGGCTTAAGCATAGCTGTCAACTTCGCATCACA AAAATGCGGGAGAGCAAAAATCAAAGTCGGAAAAATTTTCCCCGATAATC CGATTTTTCAAAACCAGAAAATCGGGAAATCGGGGAAATTTTCTCGTAAA ATCCGATTTTATTGGAATTTTTTTTCGGGAAATTGGGGAATTTTTCGTTC CGATCTTTCAAAATCCAGAAATTTTGCTGCTTGGTTTTTCCAAAATCGGG AAATTTTTGGAAATGCGGGAGATGCGGGAGAAAATCCCAAAAATGCGGGA GATTTGGCAGAATTTTCTTCACGCGGGAGAAATCGTTGACATGCAGGAGT CTCCCGCTCAATGCGGGAGAGTTGACAGCTATGGCTTAAGCGGGTTAGTA AGTTGTGTGTTGTCTACTGTACTACTTACACATAACAATAATACGAACGC TCCATTATCAAAAGTTCTGAAATCCCAAAAAAGCAACCTGAAATCAGATT GCGGTTGTTTTTCTGCCCAAACAGTGTAGCTCTAAAGCTCTAAAAACGCA TCTAATAACATGAAAACCAGAATATGATTCTTCAATGGGAATCAAAACTA TAAAGTGGACTTACAAACATCAATTTGTCAGATCTAACAAAATTTATAAC GGCACTGTCATCATTGACAATAAAACAAAAAATACTCTGTCAAGAGCCTT GTAAACATTCCAACAACTTCCATCGAAATGATCTATCACAGCTCAGTCTA CCATTTTTAGCGCAGTCCGAGGATTGAACCGAGAACTCTCGCAGAGCGCC CGAGCTCCCGCGCGGCACGCACCTTGGGGATGAAAAACTTCAATCTGTCA ATCCTTTTGTCTCAAGCGAAGAGTACGCAAAGCGATTCTAGCTTTACGAT AGTGCCGCAGATCATCAATGGATAGTATTCAATTATCATTATCCCTTTAT TTTCATTCCTAGAACTTTTGCAAAAAAAAGGAAAAATAGAAAAGTTGTAT TTCCTACTGCTCAATTCACATACTGAATTTGAAAGATCTTCTATGTGGCG TTTTTTTGCAAACTTCAAAAAACTGATTTTTGTCCCGCCTTTGCGGGATT TTGGCTCAAGTGCTTGAGTGCAGCATAGGGTACAAAGTCCAAATATGCGT TTCCCGTAATTTTTGTATGAAGAGTTAGGTCTACACTGCCAAAGGGAAGC TCTAAAAAGGGATGAGTGAAAATATATAACAATCTGATGACAGATGCAGC CAACGAGCCCATTTCTATGGTGGCCCATGAAGGCCAAATTATTTTTTTAA ATTGAAATGATTATTTATTTCCTAAACTAACGAAAAAAGTCAAAACATAT CCATTTTGATTTTCATTTTCAAAGTACTGTCCATTCTGGTCCATTTCGTA GCCCATAGACCCGTTTCAATGTTTTGATTTTTCGCGTTTGTATGCGCATG CGCCAAAATAGTTACGGTTTTTCAGAGGCAGAAAACACGAAGCGCTCGCT GGAAAAAGGCAGTTTTGATTTTATTATTCAAAATCTCTTCATCAGAATTT CATGAAATTTTAGAATAAGAATCCTATATATAGTTATTAGATAACATACT AAAATTTCTATTCAAAATTCCTTCTAGATCCTGAGAAAATTGACATAGTG TGCCTCCAGCTAATGTTGTTGTCTTTTTTGCCTCTGAAAGTAGGGCCGTT TTGCGGGTCGTAACGAGCCGATGTAAACATGTGACGTCACATGAAACGGG CCTATAGATAGGGTGCGCACTCGTCGGGATTTTTTGCATGGAACGAGGAA GAATTTACAAAATTGCATTAGTACTTATCTTTAAATTATCCAAATCTGTT CATTCTTTTTGCTCCGGCCTAGGAGCCTTTAATTCTCTCTTCCGACGGTC AAGACATTTTTTGTTTGTTTATCTAATCCGATAATCTATTCTGATTTAAT AAAAACGGATTATCTGGATTTCGATAATATTGCGAAAGTATTTAGAAAAA GATGGCTGCCGAAAGTGGGCTTAGCTGCAAATCTCAGTGAAAGATAATGA TCATTTTCATCATTATTCATGATGTTTTGGACATGATTTATGAGAATTCT GATGCATACTGGTCTATAACAATGTGGAAAGACTTTGGAGAAATTTTGGC CTTGAATTAAATCTTGAAAAATATGGCTAACTTCTCTAGTTTTATGGACG CACAAAACAACCACAAAACCATAACACATAAAACTCTGTGAAACTTTCAA ACACACATCCATTGGAATTCGAAAGAGAATACTAAAATTACAACATTACA GTGCAAATTTGAAAACGATCTGAGCAGTTTTTGTGGTGTTATGTCATATG TGTATGGCTGAAAATGATCCTGTTTTGTAGGTATTCATCATTTTTTGACT GGGCGACCATTCCTTTTGATTTTTCAAACCCGACACAGATATTTTACAAA CATATCACTATAAGAATTCAATAAAGGATACTAAAACACAATTCCTGTGT GAATTTGAACAAGATTGGAAAAAATTTCACAGTATTATGGCTGAAAATGA TCGTTTTTTAACTTTGTATGTTGTAATTTCATTGCGGCTGACGACCGTTC CTTTTGATTTTTCAAACCCGACACAGATTTTTTATACAAACATATCACTA TGAGAATTCAATAAAGGATACTAAAACACAATTCCTGTGTAAATTTGAAA AAAATTGGAGAAATTTTCACAGTGTTATGGCTGAAAATGATCGTTTTTGG ACTTTGTCGTAATTTCATCGCGGCTAGGCGACCGTTCCTTTAATTTTTCA AACCCGACACAGATTTTTTACAAACATATCACTATGAGAATTCAGTAAAG GATACTAAAACACAATTCCTGTGTAAATTTGAACAAGATCGGAGAAATTT TCACAGTGTTATAACTGAAAATGATATTTTTTGGACTTTGTCGTAATTTC ATTGGCTGGGGCGACCGTTCCTTTTGAAGATTTTTCAAACCCGAAACAGG TTTTTTCCAAATATACCACTATTTATTACATACACACTATTGTACCATTT TATTTGGTTTATCCTACTCTCCCCCAAGTATTATCCCAACAGAAAAAATA ATGCTTAGCTAAAAGCCTGTGGCCTCTAATTTAGGCTATTTTTCTCCACG AAATTTTATCTGGACAATCAAATCAAGAACTTGGAAATATTGACTTATAA ATGTTTATCTCATTTAGCTCCAATGTTGAACTTTTTAGTCGAGAATGAGT GGGCGGGGGATGGGTTGGTTCTTTAGGCGAGAAAGTGCATGTGTAATCAC TTAGAAGAGCTAAACTTCCAGCTGGTTTATTTATTCGTTAAGATTATTTC TCATACTCGCTCTGCAATAGAATTATTACTTGGCTTTCTGATCTGTTCTG ATTAGCAGTTTGTGGGCAACGTTCTAACACAACTAATTCAACAAGCTCAT CTTTCACATCTTTTAATCTCTTAAGCCGGAGCTTCCAGCGCAGCTGGTTT ATTTTAAATCAATCACGAATTATCAGGGAAACAAGTAAAAAAAACTGCAT CCATTATTTTCTTTCCAAAGATATTGATGTTTTTCGACATCAAGGTGAAA ACACGACTTAGGCGAGGGGAATTTGATGTTCTGTTTACCGTCACGTTGTA AAAAATATTTGATGCAGCAAAATTTTCATTATTCCTACCTAGTGCTTCCC ATCTCCAACGAAGTTTAATTCCACAGTGAAATCGAGCTGCTTTCACTTTC GGAATCAAAATGACCATGCGCGTGAATTCAAACGCGTTCGAGACGCGTCT AAAACGCAAATTTTTAAAACGCCCTTGTAGCCGCCCACTGCTTAAAAAAA TGCCTGCCCCATTCGCGGACGTGATTTGAACCATGTTTTTTACTCTAGGT GCACATTTTGTTAGCGAAGATGTTATTTTTGATTCACTTTGAGTGTTTTG GATAGCTTGGCACAGGAAAAGAAGAAAATAATGAGTCTTTAAGAAACAAT GAACTTTTTTGAGCTGCAGCTCAAGAGCATGCTGGCGGTCGACGGTAAAC AGAACATCAAATCCCCCTCGCCTTAGTGCTGACCACAGCACCGGAAAATT CTCGACCCACATTGAAACAAATGGCTGTTGCTAATGAGCTGGTTCATCTT TTCAATCGGGTTTTTTTTAGTAATCCCAGGGTAAGATTAGGCTACAATCT ATCACAATACGCTTTATTTGAAAATCTACAGGCCGTCTGGAATTTTGAAA AATGGAAGAAATTGCGATTTTTTAACAAGATTGCAGATTTTTTCATTTAA ACACCATACACCATCTGAAAGCTGAGGATTTCAGCTTTATATATAGTGGT GAAATTTGTTTTTAGCTATCATTTCCAGCTCATTAGCAATAAGCTAAAGT TTACCAGACCAGATTTTCAGACCACACCGGCAAAACTCTCCACACCCTGC CACACGGAAGACTAGATTTCATCCGCCATTTTTGGCGCGGTTTTGATGCT TCAGAAAATTATTTCTTGCTGGCGTGGTAAGGAGGCGATTCTTTGAAAAG GTGATTTTTTTGTGTTTTGAAAATAGAATAACTTAACCAATTTTAATAAA TGACCCCTCATTTTTTTCAGAAAGGTAAGGACTTTCAAATAAAAATTAGT TTGGTTTCTAAAAATTGAGGGGAAAATTTCGGTTAAGTCAAAAAAATCTA CCTTGATTTCAATTTTTCAACCGCTTTTTAAATGTTGTGTCCTTCATGGT CCATCGCGTGGTCAATTGAGGACACTAAAATTTTGGCTGCCGTAAGATTA TATTGTTTTGATTTTTATTTCCAAAATGGTACCTCTACATGCATGCTCGT ATTCTCATGAAAATGAAAGAAGTCTTTGTCAGTATGTTGAGTATGTGTTG TTTTTGAACTTATGGAATCTTTTAAATGATTCGTTTTTATAATTACTATG TAGTTGTGTACTTCATTTGTGCACCCACAAACTATTTGATGAGCATTATT AATTTCAACACTGTAAAAAGAATGAATGAGGGGTGTGCTTGGTTACAACA TATTTATTTTTTGCTTCAAACAGTTACATCAATATGTCAAAAACATTTTG TTCAACTACTTTTATAGGATGAACCATATTCATGTGGCTTTCAGCCTTGC ACTCCATCGCAGAGGCTAATCAATTTTAATGACTTTTTTTACTAATGACC AAGCTTTCATAAGAAACTAAATCAGTCATCTACAGGATGTATTTGCAACA ACAAGGATGAGAGTTACCTGAATCAAGTTCAAATTCCCCAGACAATTAAT TAAAACTTGAAAACTTAAATGAGACAAAATGACCGGTTGTGAACGTCCAG CAGCCAAAATATCAACCAACCAAATTTTGTTATTCGATTCCCGAGACAGC GCTACAATTTTTAAGGCCTTGTTTATATGCTAAAGTAATTAAAAAAATTT TGCATATGTAAATGGGTCAGTGTTTGAGGTCTGGCAAAATTTTCAAGAAA TAGTCTATCCGGCGGTGCGCGGATCTATGTGGGTTCTGTCTCCCCCGTAG ATCTTTTTCTTGGGAAGTTGATCTTCAAATTAGTTTTCAATGTTGCCTTG GCTCAAGTCTTTTCATCTATGGCTAAAATTTTAGGCAATTTCTCATAGTT TTTGAAAATATTAATTTCATTAAAAAGTGCCAGGTTATTTTTTCATGAAT CCCTTTAGAAGTTTTGTGGCACATTTTTTTGCTTGCAACTTAAGTAAACG ATATAGCGCTTTCGCAGCAACAATCTTTGATACGCATTTCGGCGGGACGC TAGTGTGACTAACTGTTGCATTGGAAACAGATTGATGATTCTCGGTTCTG ACTTCTGTAACTAGCTACCATGAAGTCGGGTAACTTGCATCAGTGGAGGG AAACTTGCATAACCATCAAATGAATGACCAATCAAAGCTTCACAATTTCA AAACAAATGAATTACGCAGCTCTGCTCACAGCTCTACTCTACCATTTTAG AATCTCATATATGCTGTGCGAGTAATTTTGATAATAAAAAATCATGGGAG ATCATAAATTTAAAGATGGCTGGATTTCAGACGTTTCTCGCTGGCTTCTG GACGTGTAACCTCAAAGTTAAACATAATTATGCATGACATCACTTTTGAT TAGGAGATATACATTTTACCACCTGCAAATTTTGTAAATCCGGTTTGTTT TGATTTAACTTTTTATTTTAATGACTAGCCAAGTCATTCATTTGAGGGCT ATGGAAGTTTCCCTCCACTGATATGCAAGTTACCTGACTTCACGGTATTA ATCCTAGAGATCCGATCTTTTGATATTTTATTTATCATTGAAGTATGACT TTTTGAAATTTAGTAGTTCCTAAAATTTCTTTTAAAGGTGTCCCGTAAAT TTTGGGGTAATTACAGGACACCCTCGGGGAAAATATGGGACAGGTATGAC ATGTTATTGAAAAATCCAGATATCATTCCAAAAGGTCGTGATATTTGAGA TTTTGAATCCACTTGATGACTTAAAATCCAAGTGCTATCATTTAAAGATT TAGAGTGTAGTTATAATTCCATCAAACTAGAAAATCAAGTTTGTAGTTTT CTTATGGTTTTTTTGACTTTGTTGAAAACTGGATTTTTCCTGATTTTTTG CATGGAAGTAGGGTACCATCAACGGAAAAAGATGGGTGAAGCAGATTTTC TCAAAAAAACTTTTTCGCCATAAAAATTGAATCTTTATCCATAAGAATCA CTATCTATAAGCATACATTAATGTTTTTAATTTTAGCCAAATTACTCAAT TTATTCCAAATCCCTCCCTTTAAAAACCACCCCAATGTGCACGGGGGACT AAACAATAATGAAAACAAATGACAAATTCTATTAAATTGTCACTATTTGT GTTCCGAATGATTGTTTTAACGGTCACGCTCAAGTAGATATCAATTATAT ATGTGTTAAATGCATAACCAGGTAGGTCCAGGTATCACTTGTTTGTGGAA CAAATGGTCGAGAGTGGAAAGCCCTAGGGCTACCAAAAATGTCTTGAATC TTTTGGGGGACTTAAAACTCAGAAGGGACCTAATTTTTGCCTGGGACCTA AACCCAGGCTGACGCTATGTCAATGCTGCACGCAAGTATTTAAGCTAAAG TCCCACTAAAGCTGGACAAAAATCACGTTTTTTAGTGTTTGCAAAAATAA TGCCACATATTGTATTTTATGATTGACAGATTAAAGTTTTTTCACGCCCA AGGGAGTTTGCTGTTCTGAAGGAGTGGCTATTTCAACTTGAGGCCAAATT CTCTAACCATGCGAGTTGTTTTTAAAGTTTTTACAATATTAGAACTTAGA TGCAGAAGATCTTACGGAACATTTTAAATGTGGTTCAGCAGTTCAAAAGT TATAGTGTAAAAAAGTAGTGTAAAAAATCACTTTTGAAAAAGTACAAAAA CACATGAAAAAAGGGAATCATCGAAACCCCATTGAAATTAATGTTTAAGA TAGATCATATTCTACAGTACTTTTTATTTAAGATATAAGTACAAAATAAG GAAATGCTAAATCTAGGCATACTCTTCATCACCATAAATGTCTTTATGTT TGGGCAATCTTCAAAAGATGAAATTTATCTTGGTGTTGACCAATTTCAAG AATATTATGATTTGCCAGAATTGCCATACAGTCTTGACTCTTTGGAACCA TGGATAGATGCTGAGACAATGAATGTGCACTTTAAAGGACACCATGCAAG CTATATGGCTAAGATGAATGCAGCTTTGACTGAGTGGCGAAAATCTGTAA GTAATTTGTGTGACCTTTTAGTTTATATATTTATTAAGTATTATGAGAAG TGAGAATTGGGATCAGAAATCCTTATTAAATTGAGTTTCTCCTGAAAATG GTTTTTCCAGCTGACGAGCTCCCAAGCTATTTTTCCATATTTGATTTACT TTCGAATTAAAAAAAGGAATTCTTGTGAAGTAAAGTAACAAATGAATTGT TGATGTTGGTGAAAACTAGATATACTGTTTTCATGGTTTAAATTATGAAA TTCATGCAAATAGCTTCAGCTTTCTCCCCACTTTTCTAGGAACCAGAGAA TGAATTAGCAAAGAAATCATTGGTAGACATTTTGAAAGATGTGGATAGTA TACCAGAAAAATGGAGGACTGCTATTCGAAACAATGGTGGCGGGTATTTA ATTTTTTTTTCAGGCTCTCTTCGCATTGATAAAAAATAGGAGCAATTTGG GATAAATAGCCAAAGGTTAATTAAAAGTTTTTCTGAAAGCTGTCTATGCA AGCTATTTTTAACTGAATGCAGTATGGAAGAAGAATCTGAATCGAATTGG TTTCCTTTTCTCCCAAAGTTGTTTAAATCTAATCTAAAGAATATTTTTTG GTCTTATTTTCTAGGTATTTAAATCACATCTTTTATTTTGCTACAATGAG TCCAAATCCAAAAGGAATGGAGCATACTATGCCATTAGGTATTTTAACAA ATTTCCGCAAATCTTTTCACAATTTCACCCACTTCCAATCATGGATGAGT AAAGAAGCAATGAATTTATTTGGATCTGGGTACGTTTGGCTTTGTCGTGA ACCAAATGGTGGATTTTTTACCATTTATGCAACAAAAGATCAAGCTAGTC CAATCACATATGGATTACAGCCTATCTTGGTCATTGACGTATGGGAACAT GCTTATTATTTGAAACACAAAAATAAAAGGTAATTCTAATTTCTGGTATT GTTGATTGTTTTAAAAATTGCTGTCTTGAAATGGAAAAAAGAAAGTTCAT TTTGATTTTTTATAAAGAAATCATTATAGTGGTCTTGCTTTTTTAACATT GTGTAGTCTGGTGAGGTTATTATGGATAAAAGTTGGGGGTGTGGATATTA TTGCATGATAATGAACACGTTATTGGTTTTTTAGGAAAAACTACATCGAC AATTGGTGGAAGATTGTAGATTTTTCAAAGGTAGAAGCACTTTTGAATTG GTGGTTGAATTTTGAGAAGAAATCACATGATGAACTTTAG

Coding sequence (CDS) from alignment at sc0000023_pilon:803100..812489-

>XLOC_009856 ID=XLOC_009856|Name=XLOC_009856|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1362bp|location=Sequence derived from alignment at sc0000023_pilon:803100..812489- (Clytia hemisphaerica_ch_hm2_pilon)
CACGTTTTCATCTTTCCAAAAGTAGTTGCACGTTTTCATCTTTCCAAAAG
TAGTTGAATTGCCATACAGTCTTGACTCTTTGGAACCATGGATAGATGCT
GAGACAATGAATGTGCACTTTAAAGGACACCATGCAAGCTATATGGCTAA
GATGAATGCAGCTTTGACTGAGTGGCGAAAATCTAATTGCCATACAGTCT
TGACTCTTTGGAACCATGGATAGATGCTGAGACAATGAATGTGCACTTTA
AAGGACACCATGCAAGCTATATGGCTAAGATGAATGCAGCTTTGACTGAG
TGGCGAAAATCTGAACCAGAGAATGAATTAGCAAAGAAATCATTGGTAGA
CATTTTGAAAGATGTGGATAGTATACCAGAAAAATGGAGGACTGCTATTC
GAAACAATGGTGGCGGGAACCAGAGAATGAATTAGCAAAGAAATCATTGG
TAGACATTTTGAAAGATGTGGATAGTATACCAGAAAAATGGAGGACTGCT
ATTCGAAACAATGGTGGCGGGTATTTAAATCACATCTTTTATTTTGCTAC
AATGAGTCCAAATCCAAAAGGAATGGAGCATACTATGCCATTAGGTATTT
TAACAAATTTCCGCAAATCTTTTCACAATTTCACCCACTTCCAATCATGG
ATGAGTAAAGAAGCAATGAATTTATTTGGATCTGGGTACGTTTGGCTTTG
TCGTGAACCAAATGGTGGATTTTTTACCATTTATGCAACAAAAGATCAAG
CTAGTCCAATCACATATGGATTACAGCCTATCTTGGTCATTGACGTATGG
GAACATGCTTATTATTTGAAACACAAAAATAAAAGGTATTTAAATCACAT
CTTTTATTTTGCTACAATGAGTCCAAATCCAAAAGGAATGGAGCATACTA
TGCCATTAGGTATTTTAACAAATTTCCGCAAATCTTTTCACAATTTCACC
CACTTCCAATCATGGATGAGTAAAGAAGCAATGAATTTATTTGGATCTGG
GTACGTTTGGCTTTGTCGTGAACCAAATGGTGGATTTTTTACCATTTATG
CAACAAAAGATCAAGCTAGTCCAATCACATATGGATTACAGCCTATCTTG
GTCATTGACGTATGGGAACATGCTTATTATTTGAAACACAAAAATAAAAG
GAAAAACTACATCGACAATTGGTGGAAGATTGTAGATTTTTCAAAGGTAG
AAGCACTTTTGAATTGGTGGTTGAATTTTGAGAAGAAATCACATGATGAA
CTTTAGGAAAAACTACATCGACAATTGGTGGAAGATTGTAGATTTTTCAA
AGGTAGAAGCACTTTTGAATTGGTGGTTGAATTTTGAGAAGAAATCACAT
GATGAACTTTAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_009856XLOC_009856-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023_pilongenomesc0000023_pilon:803100..812489 -
Properties
Property NameValue
Aaloc577-681:106
Aaloc262-573:626
Aaloc157-258:952
Aaloc31-156:1371
Aaloc1-27:9391