XLOC_023630 (gene) - C. hemisphaerica

Overview
NameXLOC_023630
Unique NameXLOC_023630
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0002046:10160..14023+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_023630 ID=XLOC_023630|Name=XLOC_023630|organism=Clytia hemisphaerica|type=gene|length=3864bp|location=Sequence derived from alignment at sc0002046:10160..14023+ (Clytia hemisphaerica)
NGAAGATAGGTGGCCAGGggtatcaaaaaaaaactcaatgTCTATCATTG
GGCCGATCATTGGCCGTcccaagaaaaatttctttctggaaGCTCCCAGT
CCTATGAGAATTATTAAAAGATCGACATGTTAgcaaataagaacaaaata
caaTGAGCAGCTGAGCCTTGCCAGTGCTTATAGAAAATATTTGACGTGTT
TAACTTATTAAATGTTTGTCCTGAGTAATTTATTACTTCTAGTGGCTTAG
TTNGCCAGTGCTTATAGAAAATATTTAACGTGTTTAACTTATTAAATGTT
TGTCCTGAGTAATTTATTACTTCTAGTGGCTTAATTAAATTTTGCAAGTT
AATAGATGCGAGGACAGCTTGTAACTCCAGTTTTATTCGTTTAGTGAAGG
ACAAACATTGCACACACTGTGGTTCCACGCATCATTATGACGGTTTTGAC
GACTCAATTTTGAATATGGGAAAGTTTCTTATCCACTACTCTCTACTACG
AGATTACATGAACCATTTTCTGCATGGAAAAAGGTTAGAATAATATTTCA
AaccttttttccttttaaaataatAGAAATTGACAAAATAGTTTTGTCAA
AAAGTTACTCTTTTCACAAAACAGCGATTGTAAATTTCTCATAAAGATTT
TCAACGTAATATGTTATAcctttgataaatttttaattgTATTACTGTAT
TATTTTTCAGTTGTACACTTGATGGTTACTTCAAGATCTTTTGTTTGACG
CAAAAAAGCTCTGGTCATCACAAAGTCGATCTGACTTACAAGGATTTTAA
AGATTCTTGGTATGGCTTTTTAAGTTTGCTGGAGATTGATTTTGCGGCTG
GATCAGTATGTGGTAAATGTGGAACAGAACCTGAGCATATTGTATGCGAT
GCCACAGGATTGAGCCACCAGAAGAAATTTTCAACACTGGCCTTACAAGA
AAGACCCTCAAATATATACATACCAAAGTATTCGTATGTACTGCGTTTTT
TGTTTTATACCCTTACGATTTTCAGTCTTCTTGATAAAATCAACTTCTGT
TTGGACCACCAAAAATTCAACGAGACCTTCAGTTTAACTTTTAACTTTTC
GTCTTGTGCTCTGTATTTCAAAAGTTCATCGATTAAATCATCATTAGTTT
CAAGTTGGACATCGTCAGAACTTATGCCCTTTTTTAATTTGTATAGCGTA
ACATGTTTCAAACTATTATACGAGACAACTGAAATTTTTCCGCTTTAAAC
TACACGCTAATTTAATAATTTTTTACTTTTTCATACGGTATTTAGAAAGA
ATTGGAACTTATTTTTATCACCTTAGTGAACATGCTGACCGGCTGGCCAT
TAAAGAGAAAGTGTTAAGAGACTCTTTTAAAGACTGGGCAACAAAATCAA
AGTCTGTGACTTTCATGAAAGGGATGAAAAAATTGTACCCTACTATACAC
CACGTAATCGAGTGGTCAATCGACACGTTTGGAGATGATATTCCAAAAGC
AATGAGATTGTTTTTCCGTTGCCTTTATTCGTCCAGTCCAGTTTGCTCAT
ATTTTGAAGAACGTGATTTGGAATTGAGTTTGAAGTTGCTCCAACCCAAT
TGTAAAAGTGATTCGAGACTTATGAGGGAATTTCAAATTCGATTGCCACT
TTTGTTCAACGTGTTGAACGCTGCTAATCTGGAATCCTGTCTCCCTGAAA
CGAAATGGAAAGGATTACTGCTTTACCTCGCTGACAAGGCTGAAGTTCCT
TTCAATAATGCCAAGGATTTGAGCACCTCCGATGAATTCGATGAGAATGA
ACTCAGCAGGTATCATCGACAGTACTATTAGTATAATACCATTTTAACTT
TAATTGTACATTTTAAGTTTCTTAATATGTTTTCTACTGTACTAAGCCCT
GATTGTTATTATGTAATCACGTGTGGAGGATAGCTTTTGTAGATTTCCGT
CtatttttcatgtattgctttaGCTTTCCAAATCTACCAATCCGAAGATC
GAGGGGCAACTTCGAACAGGACAAACGCAACCTTAAATACGATAGTTGCA
GGAAAAATTATAAAGGGCACCCAAACTTGACATCTGGAATATTCACGATA
TATTGTCCACATGGTatgtttatattatatatatgtatttattatatacc
tgtaggcaaaaacagccattgaataattcctgatataccatggctattat
accacggtagaatttttttttcaaattttgctttcaaagtttNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNccctcggtgatgtatattcaa
ctcggcttcgcctcgttgaatattacatcacctcgggttaataaatctca
ataaccaactttcacccattgaatatctgcttagtGTACAACTTCTCCAA
ACTATTTTAACTTCGTAGAATTGGTATGGTATGATATggatttttgggga
aaatctaTGTGCGATTAAATAtcacaatattttcttttggtTTAGGCATA
TGCTACGGTTTCCAAGTTATGGCTAAGGAAGAATCTCCCAATGTGCCATT
CACCATATTCAGGACAAGGTTTCAAAAATGTAAGCTTTTGTATGCTAAAA
GTAAAATGCCCGTATCTATCAAATAAAGGATAATTAATGTTTCACTTTAA
CTTTGCATTatggatacacgtttttttaatcaaGAAAGTATGTGACACTA
TTAGGGTTCAAagcgaaaatttattttgttctAGAATAAACATTAAGGTT
TCTCAGGAAATTAGACCAAAACACTcgcaaaatgctgaaaaaagagcttg
tttaaaaaatgttttagagtattttgtattttattttccaaacctTTTGC
AGTGCACATAAATTGTTTACAGAATGTATGTTCACTTTCCTAAACATTTA
TTTTCAGCACCTCGATACATAGTATACGACAATAATTGTAGCCTTCACGC
ATATTGTCTCAATAGAGACCCAGTATTCTTTCGCGAGACCAAGTTCCTTG
TCGATCGTTTCCATTGGAAGAATCATACTGGTAAGAACAGCATTTACTAC
GTGGTTCATTCTTATTTTTGGTGTAGTGAAGTTCTATTCAGTTCGTCATC
GATAGTTTTAATTGAAACATAAGATTGTGGGTGTTTATGGCCATCAGTCA
ATTAGTGAATTTTAATAATCTTTTCGTGTTATTCAACTCAATAAGCCTAG
TTGCCCGGAAAGAggagaactttttttcaaaaatctacttcatcattttg
aataaaataaaatcaaattatgcATAAGATATTACATAaatggatttttc
aaatttcaatttcagcTTGCGGTACAGGCTATTGCATGAACATCTATCAT
GAACTGGAATGGCTAAATAGCCAGATCAACGAGCAGCAAAATGCTTCTAC
TAAACGTCTAAAAACACAGCTTTCTTACATGCGACCTGACCATTTTATGT
CGCATTGTAAGTTTTTCCTATGGTATCGAAATTCATTGAAACAAGACTTG
CTGTAGGCTTGGTTGCCCCATGAATTTATTATATACACCGGATAAACAAC
AAGCTtagttttcattgatttctcataCTCTAGCTATGTCCGTagtaatg
acattattattCACTCTCCTTCCTTCATTGCATTTCTTTGTATGAGAAAA
TGagaattaaaattttccttAGAGAGACAAACGCATCAAAGTAATTGCTA
ATTATGTgttgtta
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00039219TCONS_00039219Clytia hemisphaericatranscript
TCONS_00039220TCONS_00039220Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00039219-proteinTCONS_00039219-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002046supercontigsc0002046:10160..14023 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.75	2.2	0.7	0.66	3.45	2.93	2.39	2.75	1.25	1.38	1.83	1.31	0.88	1.32	2	2.44	2.67	2.86	1.06	1.44	1.93	2.82	1.33	1.57	0.78	0.67	2.14	1.93	1.7	1.34