TCONS_00039220 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039220
Unique NameTCONS_00039220
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039220 ID=TCONS_00039220|Name=TCONS_00039220|organism=Clytia hemisphaerica|type=transcript|length=1527bp
TGAAGGACAAACATTGCACACACTGTGGTTCCACGCATCATTATGACGGT
TTTGACGACTCAATTTTGAATATGGGAAAGTTTCTTATCCACTACTCTCT
ACTACGAGATTACATGAACCATTTTCTGCATGGAAAAAGTTTGCTGGAGA
TTGATTTTGCGGCTGGATCAGTATGTGGTAAATGTGGAACAGAACCTGAG
CATATTGTATGCGATGCCACAGGATTGAGCCACCAGAAGAAATTTTCAAC
ACTGGCCTTACAAGAAAGACCCTCAAATATATACATACCAAAGTATTCTG
AACATGCTGACCGGCTGGCCATTAAAGAGAAAGTGTTAAGAGACTCTTTT
AAAGACTGGGCAACAAAATCAAAGTCTGTGACTTTCATGAAAGGGATGAA
AAAATTGTACCCTACTATACACCACGTAATCGAGTGGTCAATCGACACGT
TTGGAGATGATATTCCAAAAGCAATGAGATTGTTTTTCCGTTGCCTTTAT
TCGTCCAGTCCAGTTTGCTCATATTTTGAAGAACGTGATTTGGAATTGAG
TTTGAAGTTGCTCCAACCCAATTGTAAAAGTGATTCGAGACTTATGAGGG
AATTTCAAATTCGATTGCCACTTTTGTTCAACGTGTTGAACGCTGCTAAT
CTGGAATCCTGTCTCCCTGAAACGAAATGGAAAGGATTACTGCTTTACCT
CGCTGACAAGGCTGAAGTTCCTTTCAATAATGCCAAGGATTTGAGCACCT
CCGATGAATTCGATGAGAATGAACTCAGCAGCTTTCCAAATCTACCAATC
CGAAGATCGAGGGGCAACTTCGAACAGGACAAACGCAACCTTAAATACGA
TAGTTGCAGGAAAAATTATAAAGGGCACCCAAACTTGACATCTGGAATAT
TCACGATATATTGTCCACATGGCATATGCTACGGTTTCCAAGTTATGGCT
AAGGAAGAATCTCCCAATGTGCCATTCACCATATTCAGGACAAGGTTTCA
AAAATCACCTCGATACATAGTATACGACAATAATTGTAGCCTTCACGCAT
ATTGTCTCAATAGAGACCCAGTATTCTTTCGCGAGACCAAGTTCCTTGTC
GATCGTTTCCATTGGAAGAATCATACTGcTTGCGGTACAGGCTATTGCAT
GAACATCTATCATGAACTGGAATGGCTAAATAGCCAGATCAACGAGCAGC
AAAATGCTTCTACTAAACGTCTAAAAACACAGCTTTCTTACATGCGACCT
GACCATTTTATGTCGCATTGTAAGTTTTTCCTATGGTATCGAAATTCATT
GAAACAAGACTTGCTGTAGGCTTGGTTGCCCCATGAATTTATTATATACA
CCGGATAAACAACAAGCTtagttttcattgatttctcataCTCTAGCTAT
GTCCGTagtaatgacattattattCACTCTCCTTCCTTCATTGCATTTCT
TTGTATGAGAAAATGagaattaaaattttccttAGAGAGACAAACGCATC
AAAGTAATTGCTAATTATGTgttgtta
Run BLAST on NCBI

transcript from alignment at sc0002046:10554..14023+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039220 ID=TCONS_00039220|Name=TCONS_00039220|organism=Clytia hemisphaerica|type=transcript|length=3470bp|location=Sequence derived from alignment at sc0002046:10554..14023+ (Clytia hemisphaerica)
TGAAGGACAAACATTGCACACACTGTGGTTCCACGCATCATTATGACGGT
TTTGACGACTCAATTTTGAATATGGGAAAGTTTCTTATCCACTACTCTCT
ACTACGAGATTACATGAACCATTTTCTGCATGGAAAAAGGTTAGAATAAT
ATTTCAAaccttttttccttttaaaataatAGAAATTGACAAAATAGTTT
TGTCAAAAAGTTACTCTTTTCACAAAACAGCGATTGTAAATTTCTCATAA
AGATTTTCAACGTAATATGTTATAcctttgataaatttttaattgTATTA
CTGTATTATTTTTCAGTTGTACACTTGATGGTTACTTCAAGATCTTTTGT
TTGACGCAAAAAAGCTCTGGTCATCACAAAGTCGATCTGACTTACAAGGA
TTTTAAAGATTCTTGGTATGGCTTTTTAAGTTTGCTGGAGATTGATTTTG
CGGCTGGATCAGTATGTGGTAAATGTGGAACAGAACCTGAGCATATTGTA
TGCGATGCCACAGGATTGAGCCACCAGAAGAAATTTTCAACACTGGCCTT
ACAAGAAAGACCCTCAAATATATACATACCAAAGTATTCGTATGTACTGC
GTTTTTTGTTTTATACCCTTACGATTTTCAGTCTTCTTGATAAAATCAAC
TTCTGTTTGGACCACCAAAAATTCAACGAGACCTTCAGTTTAACTTTTAA
CTTTTCGTCTTGTGCTCTGTATTTCAAAAGTTCATCGATTAAATCATCAT
TAGTTTCAAGTTGGACATCGTCAGAACTTATGCCCTTTTTTAATTTGTAT
AGCGTAACATGTTTCAAACTATTATACGAGACAACTGAAATTTTTCCGCT
TTAAACTACACGCTAATTTAATAATTTTTTACTTTTTCATACGGTATTTA
GAAAGAATTGGAACTTATTTTTATCACCTTAGTGAACATGCTGACCGGCT
GGCCATTAAAGAGAAAGTGTTAAGAGACTCTTTTAAAGACTGGGCAACAA
AATCAAAGTCTGTGACTTTCATGAAAGGGATGAAAAAATTGTACCCTACT
ATACACCACGTAATCGAGTGGTCAATCGACACGTTTGGAGATGATATTCC
AAAAGCAATGAGATTGTTTTTCCGTTGCCTTTATTCGTCCAGTCCAGTTT
GCTCATATTTTGAAGAACGTGATTTGGAATTGAGTTTGAAGTTGCTCCAA
CCCAATTGTAAAAGTGATTCGAGACTTATGAGGGAATTTCAAATTCGATT
GCCACTTTTGTTCAACGTGTTGAACGCTGCTAATCTGGAATCCTGTCTCC
CTGAAACGAAATGGAAAGGATTACTGCTTTACCTCGCTGACAAGGCTGAA
GTTCCTTTCAATAATGCCAAGGATTTGAGCACCTCCGATGAATTCGATGA
GAATGAACTCAGCAGGTATCATCGACAGTACTATTAGTATAATACCATTT
TAACTTTAATTGTACATTTTAAGTTTCTTAATATGTTTTCTACTGTACTA
AGCCCTGATTGTTATTATGTAATCACGTGTGGAGGATAGCTTTTGTAGAT
TTCCGTCtatttttcatgtattgctttaGCTTTCCAAATCTACCAATCCG
AAGATCGAGGGGCAACTTCGAACAGGACAAACGCAACCTTAAATACGATA
GTTGCAGGAAAAATTATAAAGGGCACCCAAACTTGACATCTGGAATATTC
ACGATATATTGTCCACATGGTatgtttatattatatatatgtatttatta
tatacctgtaggcaaaaacagccattgaataattcctgatataccatggc
tattataccacggtagaatttttttttcaaattttgctttcaaagtttNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccctcggtgatgtat
attcaactcggcttcgcctcgttgaatattacatcacctcgggttaataa
atctcaataaccaactttcacccattgaatatctgcttagtGTACAACTT
CTCCAAACTATTTTAACTTCGTAGAATTGGTATGGTATGATATggatttt
tggggaaaatctaTGTGCGATTAAATAtcacaatattttcttttggtTTA
GGCATATGCTACGGTTTCCAAGTTATGGCTAAGGAAGAATCTCCCAATGT
GCCATTCACCATATTCAGGACAAGGTTTCAAAAATGTAAGCTTTTGTATG
CTAAAAGTAAAATGCCCGTATCTATCAAATAAAGGATAATTAATGTTTCA
CTTTAACTTTGCATTatggatacacgtttttttaatcaaGAAAGTATGTG
ACACTATTAGGGTTCAAagcgaaaatttattttgttctAGAATAAACATT
AAGGTTTCTCAGGAAATTAGACCAAAACACTcgcaaaatgctgaaaaaag
agcttgtttaaaaaatgttttagagtattttgtattttattttccaaacc
tTTTGCAGTGCACATAAATTGTTTACAGAATGTATGTTCACTTTCCTAAA
CATTTATTTTCAGCACCTCGATACATAGTATACGACAATAATTGTAGCCT
TCACGCATATTGTCTCAATAGAGACCCAGTATTCTTTCGCGAGACCAAGT
TCCTTGTCGATCGTTTCCATTGGAAGAATCATACTGGTAAGAACAGCATT
TACTACGTGGTTCATTCTTATTTTTGGTGTAGTGAAGTTCTATTCAGTTC
GTCATCGATAGTTTTAATTGAAACATAAGATTGTGGGTGTTTATGGCCAT
CAGTCAATTAGTGAATTTTAATAATCTTTTCGTGTTATTCAACTCAATAA
GCCTAGTTGCCCGGAAAGAggagaactttttttcaaaaatctacttcatc
attttgaataaaataaaatcaaattatgcATAAGATATTACATAaatgga
tttttcaaatttcaatttcagcTTGCGGTACAGGCTATTGCATGAACATC
TATCATGAACTGGAATGGCTAAATAGCCAGATCAACGAGCAGCAAAATGC
TTCTACTAAACGTCTAAAAACACAGCTTTCTTACATGCGACCTGACCATT
TTATGTCGCATTGTAAGTTTTTCCTATGGTATCGAAATTCATTGAAACAA
GACTTGCTGTAGGCTTGGTTGCCCCATGAATTTATTATATACACCGGATA
AACAACAAGCTtagttttcattgatttctcataCTCTAGCTATGTCCGTa
gtaatgacattattattCACTCTCCTTCCTTCATTGCATTTCTTTGTATG
AGAAAATGagaattaaaattttccttAGAGAGACAAACGCATCAAAGTAA
TTGCTAATTATGTgttgtta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023630XLOC_023630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039220-exon-sc0002046-1491911889:10554..10692TCONS_00039220-exon-sc0002046-1491911889:10554..10692Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1510915933:10554..10692TCONS_00039220-exon-sc0002046-1510915933:10554..10692Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1575043694:10554..10692TCONS_00039220-exon-sc0002046-1575043694:10554..10692Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1491911889:10984..11142TCONS_00039220-exon-sc0002046-1491911889:10984..11142Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1510915933:10984..11142TCONS_00039220-exon-sc0002046-1510915933:10984..11142Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1575043694:10984..11142TCONS_00039220-exon-sc0002046-1575043694:10984..11142Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1491911889:11486..11968TCONS_00039220-exon-sc0002046-1491911889:11486..11968Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1510915933:11486..11968TCONS_00039220-exon-sc0002046-1510915933:11486..11968Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1575043694:11486..11968TCONS_00039220-exon-sc0002046-1575043694:11486..11968Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1491911889:12133..12272TCONS_00039220-exon-sc0002046-1491911889:12133..12272Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1510915933:12133..12272TCONS_00039220-exon-sc0002046-1510915933:12133..12272Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1575043694:12133..12272TCONS_00039220-exon-sc0002046-1575043694:12133..12272Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1491911889:12805..12888TCONS_00039220-exon-sc0002046-1491911889:12805..12888Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1510915933:12805..12888TCONS_00039220-exon-sc0002046-1510915933:12805..12888Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1575043694:12805..12888TCONS_00039220-exon-sc0002046-1575043694:12805..12888Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1491911889:13217..13339TCONS_00039220-exon-sc0002046-1491911889:13217..13339Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1510915933:13217..13339TCONS_00039220-exon-sc0002046-1510915933:13217..13339Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1575043694:13217..13339TCONS_00039220-exon-sc0002046-1575043694:13217..13339Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1491911889:13625..14023TCONS_00039220-exon-sc0002046-1491911889:13625..14023Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1510915933:13625..14023TCONS_00039220-exon-sc0002046-1510915933:13625..14023Clytia hemisphaericaexon
TCONS_00039220-exon-sc0002046-1575043694:13625..14023TCONS_00039220-exon-sc0002046-1575043694:13625..14023Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002046supercontigsc0002046:10554..14023 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.47031	0.979073	0.305618	0.578629	1.94163	1.80952	1.75938	1.57708	0.894467	0.866464	1.04888	0.517982	0.319844	1.03059	1.68506	1.56668	1.72365	2.05217	0.390574	0.971137	1.31819	2.02771	0.68653	1.20733	0.480386	0.2691	1.47043	1.52136	1.08285	0.865493
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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